Wall clock time and date at job start Tue Mar 31 2020 13:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30432 * 125.99507 * 2 1 4 4 N 1.39928 * 108.91681 * 180.17810 * 3 2 1 5 5 C 1.46506 * 125.74171 * 179.87569 * 4 3 2 6 6 C 1.52997 * 109.47289 * 94.68701 * 5 4 3 7 7 C 1.52992 * 109.46999 * 214.69169 * 5 4 3 8 8 C 1.34221 * 108.51707 * 359.60568 * 4 3 2 9 9 C 1.38134 * 107.40511 * 0.23313 * 8 4 3 10 10 C 1.47288 * 126.42493 * 179.97438 * 9 8 4 11 11 O 1.21517 * 119.99812 * 180.02562 * 10 9 8 12 12 O 1.34757 * 120.00136 * 0.02562 * 10 9 8 13 13 C 1.45197 * 117.00014 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46875 * 329.99974 * 13 12 10 15 15 C 1.50697 * 109.46924 * 210.00053 * 13 12 10 16 16 H 1.07997 * 120.00370 * 0.02562 * 15 13 12 17 17 C 1.37880 * 119.99680 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00196 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99745 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47172 * 90.00553 * 19 17 15 21 21 H 1.48502 * 109.47149 * 210.00558 * 19 17 15 22 22 H 1.48504 * 109.47290 * 330.00211 * 19 17 15 23 23 C 1.50698 * 109.46970 * 90.00462 * 13 12 10 24 24 C 1.34512 * 125.78511 * 219.71501 * 23 13 12 25 25 C 1.41384 * 106.83935 * 179.88670 * 24 23 13 26 26 C 1.34512 * 106.84220 * 0.37510 * 25 24 23 27 27 O 1.34303 * 125.79322 * 40.01892 * 23 13 12 28 28 H 1.09003 * 109.46782 * 270.24784 * 1 2 3 29 29 H 1.08999 * 109.47323 * 30.23886 * 1 2 3 30 30 H 1.08991 * 109.47189 * 150.24714 * 1 2 3 31 31 H 1.08998 * 109.46566 * 334.68435 * 5 4 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00146 * 6 5 4 34 34 H 1.09004 * 109.47261 * 300.00128 * 6 5 4 35 35 H 1.09001 * 109.47066 * 299.99819 * 7 5 4 36 36 H 1.08996 * 109.47747 * 59.99485 * 7 5 4 37 37 H 1.09002 * 109.47103 * 179.97438 * 7 5 4 38 38 H 1.07996 * 126.30097 * 180.22845 * 8 4 3 39 39 H 0.96999 * 119.99719 * 179.97438 * 18 17 15 40 40 H 1.08003 * 126.58290 * 0.02938 * 24 23 13 41 41 H 1.08004 * 126.57634 * 180.16117 * 25 24 23 42 42 H 1.07998 * 125.79113 * 179.75196 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6443 -0.0041 5 6 4.7784 1.5297 -0.0080 6 6 5.2606 1.7444 1.4281 7 6 5.8989 0.8927 -0.8324 8 6 3.6449 -0.6974 0.0021 9 6 2.3376 -1.1436 0.0048 10 6 1.8927 -2.5477 0.0110 11 8 0.7060 -2.8090 0.0124 12 8 2.8017 -3.5425 0.0152 13 6 2.2913 -4.9018 0.0206 14 1 1.3304 -4.9269 0.5344 15 6 3.2666 -5.8016 0.7348 16 1 4.1785 -5.3928 1.1441 17 6 2.9940 -7.1468 0.8667 18 7 1.8833 -7.6446 0.3687 19 14 4.2026 -8.2621 1.7526 20 1 3.8670 -8.3062 3.1986 21 1 4.1211 -9.6314 1.1836 22 1 5.5803 -7.7355 1.5800 23 6 2.1151 -5.3778 -1.3983 24 6 1.0921 -6.1209 -1.8573 25 6 1.3260 -6.3330 -3.2354 26 6 2.4821 -5.7139 -3.5343 27 8 2.9556 -5.1370 -2.4177 28 1 -0.3633 0.0044 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5099 31 1 4.5050 2.4893 -0.4468 32 1 6.1293 2.4027 1.4251 33 1 5.5339 0.7847 1.8668 34 1 4.4622 2.1982 2.0154 35 1 6.1722 -0.0669 -0.3936 36 1 5.5554 0.7398 -1.8554 37 1 6.7672 1.5517 -0.8357 38 1 4.5311 -1.3147 0.0045 39 1 1.6918 -8.5910 0.4612 40 1 0.2519 -6.4838 -1.2837 41 1 0.6986 -6.8888 -3.9166 42 1 2.9504 -5.6858 -4.5071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345976956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:37 Heat of formation + Delta-G solvation = -19.212412 kcal Electronic energy + Delta-G solvation = -26829.754476 eV Core-core repulsion = 22970.742638 eV Total energy + Delta-G solvation = -3859.011838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.14211 -42.58328 -40.75277 -37.51611 -36.79502 -35.24548 -33.51640 -32.79411 -32.04314 -31.07545 -28.77139 -28.47031 -28.17419 -25.70711 -24.48713 -22.64166 -22.25016 -21.43556 -20.99861 -20.64670 -19.18847 -18.45515 -18.29430 -17.56161 -16.93873 -16.89220 -16.40197 -16.22055 -16.16812 -15.57520 -15.18306 -14.79576 -14.60512 -14.33947 -14.15739 -13.78022 -13.53448 -13.48431 -13.44631 -13.19785 -13.18782 -13.07231 -13.00733 -12.92724 -12.77510 -12.33280 -12.25046 -12.17981 -11.97875 -11.90864 -11.34605 -11.24183 -10.77106 -10.48959 -10.41703 -9.82419 -9.08493 -8.20761 -6.49113 0.34046 0.94865 1.11836 1.26344 1.41698 1.44073 1.54521 1.94731 2.17369 2.17666 2.44475 2.48221 3.04739 3.24822 3.66264 3.76784 3.89181 4.00652 4.10281 4.16776 4.32136 4.42644 4.44814 4.61858 4.63887 4.68242 4.72118 4.75737 4.78782 4.81178 4.91791 4.97506 5.18348 5.18619 5.22237 5.34241 5.41944 5.47193 5.50453 5.71148 5.84888 5.86548 5.99884 6.46453 6.51947 6.63331 7.01204 7.23243 8.76471 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004074 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.659834 B = 6870.544466 C = 7562.130636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.125 3.875 3 N -0.313 5.313 4 N -0.344 5.344 5 C 0.142 3.858 6 C -0.162 4.162 7 C -0.166 4.166 8 C 0.146 3.854 9 C -0.307 4.307 10 C 0.528 3.472 11 O -0.549 6.549 12 O -0.353 6.353 13 C 0.304 3.696 14 H 0.042 0.958 15 C -0.554 4.554 16 H 0.076 0.924 17 C 0.025 3.975 18 N -0.891 5.891 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.001 4.001 24 C -0.194 4.194 25 C -0.227 4.227 26 C -0.072 4.072 27 O -0.194 6.194 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.210 0.790 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.165 0.835 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 15.999 -3.220 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 N -0.134 5.134 4 N -0.122 5.122 5 C 0.043 3.957 6 C -0.220 4.220 7 C -0.224 4.224 8 C -0.008 4.008 9 C -0.320 4.320 10 C 0.375 3.625 11 O -0.441 6.441 12 O -0.270 6.270 13 C 0.250 3.750 14 H 0.059 0.941 15 C -0.591 4.591 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.526 5.526 19 Si 0.803 3.197 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.052 4.052 24 C -0.213 4.213 25 C -0.247 4.247 26 C -0.138 4.138 27 O -0.091 6.091 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.182 0.818 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.860 17.293 -3.217 19.265 hybrid contribution -0.305 -2.244 0.404 2.300 sum 7.555 15.049 -2.814 17.072 Atomic orbital electron populations 1.20355 0.84864 1.04048 1.04106 1.22694 0.98085 0.88202 0.95166 1.77072 0.87050 1.22023 1.27300 1.49111 1.05989 1.04578 1.52491 1.21898 0.80986 0.93467 0.99385 1.22258 1.02782 1.03587 0.93338 1.22287 0.97655 1.02969 0.99478 1.23413 0.98832 0.85758 0.92794 1.19481 0.94458 0.90078 1.27991 1.20610 0.83997 0.86226 0.71670 1.90711 1.18995 1.85308 1.49063 1.86556 1.40006 1.17269 1.83149 1.18728 0.96589 0.74243 0.85441 0.94080 1.21139 1.07195 0.93174 1.37592 0.90598 1.25818 0.97667 0.98759 0.95603 1.70172 1.24918 1.14473 1.43057 0.85226 0.78826 0.77149 0.78509 1.19257 1.20452 1.18706 1.23346 0.89469 1.02851 0.89511 1.21278 1.01119 1.03947 0.94973 1.22034 1.00280 1.06657 0.95680 1.24655 0.97135 1.01056 0.90969 1.83952 1.46083 1.61528 1.17539 0.89394 0.88730 0.90713 0.86548 0.87135 0.92031 0.92886 0.91061 0.92053 0.86701 0.77337 0.92100 0.86046 0.81763 0.74478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.21 9.92 71.24 0.71 -1.51 16 2 C 0.13 4.20 7.27 43.53 0.32 4.51 16 3 N -0.31 -9.39 12.50 -46.65 -0.58 -9.97 16 4 N -0.34 -8.57 3.50 -325.71 -1.14 -9.71 16 5 C 0.14 2.13 3.91 44.99 0.18 2.30 16 6 C -0.16 -2.01 9.52 71.98 0.69 -1.32 16 7 C -0.17 -1.82 8.82 71.98 0.64 -1.18 16 8 C 0.15 4.22 10.43 84.30 0.88 5.10 16 9 C -0.31 -11.42 6.13 -20.16 -0.12 -11.54 16 10 C 0.53 24.54 7.92 70.20 0.56 25.09 16 11 O -0.55 -27.99 14.18 19.78 0.28 -27.71 16 12 O -0.35 -17.76 9.68 -54.73 -0.53 -18.29 16 13 C 0.30 17.05 2.42 29.10 0.07 17.12 16 14 H 0.04 2.56 7.15 -2.39 -0.02 2.55 16 15 C -0.55 -31.44 8.89 25.60 0.23 -31.21 16 16 H 0.08 4.17 7.81 -2.91 -0.02 4.15 16 17 C 0.02 1.35 5.30 84.66 0.45 1.80 16 18 N -0.89 -50.70 10.92 21.45 0.23 -50.47 16 19 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 C 0.00 -0.07 5.54 24.83 0.14 0.07 16 24 C -0.19 -10.02 9.16 22.19 0.20 -9.82 16 25 C -0.23 -9.57 10.91 22.19 0.24 -9.33 16 26 C -0.07 -2.83 12.09 66.97 0.81 -2.02 16 27 O -0.19 -9.57 10.65 -1.32 -0.01 -9.58 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.54 6.55 -2.39 -0.02 2.52 16 31 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.82 7.13 -2.39 -0.02 0.81 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.21 5.05 7.23 -2.91 -0.02 5.03 16 39 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.12 6.63 7.85 -2.91 -0.02 6.61 16 41 H 0.16 5.61 8.06 -2.91 -0.02 5.59 16 42 H 0.24 6.38 8.06 -2.91 -0.02 6.36 16 Total: -1.00 -75.13 363.79 7.28 -67.86 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.03 Total: 25.00 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.97 Total: -11.92 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.49 Total: -70.15 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.26 Total: -55.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.13 7.28 -67.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.643 kcal (2) G-P(sol) polarization free energy of solvation -75.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds