Wall clock time and date at job start Tue Mar 31 2020 13:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47028 * 2 1 4 4 C 1.52999 * 109.47450 * 239.99551 * 2 1 3 5 5 C 1.50709 * 109.46790 * 119.99952 * 2 1 3 6 6 C 1.39637 * 126.06039 * 75.00409 * 5 2 1 7 7 C 1.38484 * 105.35340 * 180.02562 * 6 5 2 8 8 C 1.47013 * 126.89195 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99946 * 0.02562 * 8 7 6 10 10 O 1.34821 * 119.99973 * 179.97438 * 8 7 6 11 11 C 1.45198 * 116.99837 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47379 * 330.00250 * 11 10 8 13 13 C 1.50699 * 109.47028 * 210.00349 * 11 10 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47112 * 60.00201 * 17 15 13 19 19 H 1.48503 * 109.47000 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46939 * 299.99464 * 17 15 13 21 21 C 1.50701 * 109.47036 * 90.00279 * 11 10 8 22 22 C 1.34511 * 125.79127 * 219.99814 * 21 11 10 23 23 C 1.41380 * 106.84330 * 180.02562 * 22 21 11 24 24 C 1.34519 * 106.84111 * 359.97438 * 23 22 21 25 25 O 1.34308 * 125.78536 * 39.69422 * 21 11 10 26 26 N 1.36651 * 106.21326 * 0.22829 * 7 6 5 27 27 H 0.97005 * 125.19357 * 179.77214 * 26 7 6 28 28 N 1.28435 * 109.60424 * 359.61170 * 26 7 6 29 29 H 1.08994 * 109.47861 * 299.99941 * 1 2 3 30 30 H 1.09000 * 109.47150 * 60.00568 * 1 2 3 31 31 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47010 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47195 * 299.99979 * 3 2 1 34 34 H 1.09006 * 109.46870 * 59.99821 * 3 2 1 35 35 H 1.08991 * 109.47235 * 300.00331 * 4 2 1 36 36 H 1.09005 * 109.46507 * 60.00300 * 4 2 1 37 37 H 1.08997 * 109.46930 * 179.97438 * 4 2 1 38 38 H 1.07999 * 127.32257 * 0.02562 * 6 5 2 39 39 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 40 40 H 1.08001 * 126.57866 * 0.02981 * 22 21 11 41 41 H 1.07994 * 126.58293 * 179.97438 * 23 22 21 42 42 H 1.07993 * 125.79140 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2306 6 6 2.0308 -2.0909 1.4408 7 6 2.5815 -2.2708 2.6987 8 6 2.8023 -3.5488 3.3909 9 8 2.4893 -4.5931 2.8533 10 8 3.3529 -3.5626 4.6215 11 6 3.5419 -4.8604 5.2445 12 1 2.7724 -5.5478 4.8930 13 6 3.4426 -4.7183 6.7415 14 1 3.2556 -3.7495 7.1807 15 6 3.5904 -5.8250 7.5504 16 7 3.8176 -7.0048 7.0155 17 14 3.4679 -5.6485 9.4060 18 1 2.1285 -5.1178 9.7655 19 1 3.6612 -6.9759 10.0433 20 1 4.5163 -4.7120 9.8844 21 6 4.9013 -5.3993 4.8801 22 6 5.1849 -6.6787 4.5767 23 6 6.5705 -6.7370 4.3016 24 6 7.0507 -5.4896 4.4529 25 8 6.0341 -4.6824 4.7978 26 7 2.8731 -1.0216 3.1697 27 1 3.2686 -0.8283 4.0342 28 7 2.5466 -0.1429 2.2918 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2491 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2493 38 1 1.6758 -2.8557 0.7660 39 1 3.9219 -7.7833 7.5847 40 1 4.4879 -7.5032 4.5484 41 1 7.1351 -7.6146 4.0234 42 1 8.0784 -5.1875 4.3157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347948047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:16 Heat of formation + Delta-G solvation = -27.841460 kcal Electronic energy + Delta-G solvation = -26527.904866 eV Core-core repulsion = 22668.518844 eV Total energy + Delta-G solvation = -3859.386022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.72871 -43.20935 -41.12850 -37.84593 -37.70079 -35.34914 -33.58367 -32.39972 -32.07918 -31.33584 -28.66816 -28.11261 -28.02892 -25.88867 -24.36262 -23.66330 -22.43994 -21.97337 -21.33918 -20.25068 -19.38088 -18.85132 -18.53412 -17.67204 -17.17486 -16.95437 -16.56634 -16.35844 -16.28216 -15.73373 -15.06192 -14.85300 -14.80009 -14.65075 -14.45199 -14.00024 -13.60681 -13.51948 -13.24939 -13.09626 -13.05200 -12.92152 -12.83588 -12.47625 -12.42549 -12.26171 -12.16734 -12.02884 -11.85880 -11.76921 -11.45890 -11.43822 -10.83573 -10.54812 -10.36093 -10.21791 -9.15829 -8.27845 -6.56880 -0.09977 1.02898 1.36939 1.40880 1.42346 1.47251 1.55997 1.80605 1.83842 2.06201 2.34827 2.38114 2.97931 3.32305 3.61396 3.77534 4.10620 4.15770 4.21902 4.31495 4.37168 4.38152 4.51971 4.58217 4.64664 4.88738 4.89896 4.99565 5.10424 5.11185 5.11663 5.14389 5.22081 5.28702 5.33894 5.40624 5.45574 5.51763 5.52760 5.59473 5.71102 5.87999 5.90440 6.42854 6.45206 6.70407 6.89611 7.14384 8.69251 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.003387 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.929517 B = 8264.564695 C = 9030.667311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.016 3.984 3 C -0.132 4.132 4 C -0.139 4.139 5 C 0.036 3.964 6 C -0.142 4.142 7 C -0.030 4.030 8 C 0.527 3.473 9 O -0.524 6.524 10 O -0.352 6.352 11 C 0.305 3.695 12 H 0.049 0.951 13 C -0.559 4.559 14 H 0.076 0.924 15 C 0.027 3.973 16 N -0.889 5.889 17 Si 0.980 3.020 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.008 4.008 22 C -0.189 4.189 23 C -0.226 4.226 24 C -0.070 4.070 25 O -0.195 6.195 26 N -0.358 5.358 27 H 0.459 0.541 28 N -0.260 5.260 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.175 0.825 39 H 0.272 0.728 40 H 0.124 0.876 41 H 0.167 0.833 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 12.105 -12.634 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 C -0.189 4.189 4 C -0.197 4.197 5 C -0.121 4.121 6 C -0.171 4.171 7 C -0.157 4.157 8 C 0.371 3.629 9 O -0.413 6.413 10 O -0.268 6.268 11 C 0.252 3.748 12 H 0.066 0.934 13 C -0.596 4.596 14 H 0.094 0.906 15 C -0.177 4.177 16 N -0.523 5.523 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.059 4.059 22 C -0.208 4.208 23 C -0.245 4.245 24 C -0.136 4.136 25 O -0.093 6.093 26 N -0.076 5.076 27 H 0.307 0.693 28 N -0.095 5.095 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.192 0.808 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.184 0.816 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.980 12.847 -12.190 17.737 hybrid contribution 0.144 -1.751 1.439 2.271 sum -0.836 11.096 -10.752 15.473 Atomic orbital electron populations 1.21880 0.92217 1.02535 1.02802 1.19108 0.96215 0.95064 0.88205 1.21755 1.00795 0.93762 1.02623 1.21904 1.01008 1.00719 0.96048 1.22432 1.02432 0.90859 0.96344 1.22231 1.02821 0.97844 0.94173 1.20606 1.12783 0.84652 0.97655 1.20242 0.74148 0.88105 0.80394 1.90826 1.49611 1.33942 1.66876 1.86580 1.72426 1.38417 1.29427 1.18857 0.86177 0.77371 0.92416 0.93388 1.21090 1.53772 0.96466 0.88256 0.90565 1.25800 0.93167 0.94197 1.04516 1.70150 1.44935 0.99578 1.37640 0.85268 0.79318 0.77748 0.77334 1.18743 1.20186 1.19431 1.23303 0.88059 0.92067 1.02453 1.21304 0.96854 0.96372 1.06301 1.22053 0.94477 0.99272 1.08731 1.24681 0.93672 0.89646 1.05629 1.83956 1.16661 1.39691 1.68954 1.43747 1.45064 1.01816 1.16941 0.69337 1.73101 1.16318 1.19770 1.00279 0.93269 0.89530 0.92409 0.93293 0.90077 0.92845 0.92092 0.89541 0.93095 0.80754 0.91897 0.85772 0.81594 0.74491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.46 71.98 0.61 -1.49 16 2 C 0.02 0.29 0.96 -52.93 -0.05 0.24 16 3 C -0.13 -2.13 8.04 71.98 0.58 -1.55 16 4 C -0.14 -2.09 8.20 71.98 0.59 -1.50 16 5 C 0.04 0.92 5.65 43.04 0.24 1.17 16 6 C -0.14 -4.15 10.12 22.67 0.23 -3.92 16 7 C -0.03 -1.05 7.21 40.75 0.29 -0.76 16 8 C 0.53 22.96 7.92 70.12 0.56 23.52 16 9 O -0.52 -25.42 16.18 19.68 0.32 -25.10 16 10 O -0.35 -16.83 9.86 -55.33 -0.55 -17.37 16 11 C 0.31 16.53 2.42 29.10 0.07 16.60 16 12 H 0.05 2.86 7.15 -2.39 -0.02 2.84 16 13 C -0.56 -30.98 8.89 25.60 0.23 -30.75 16 14 H 0.08 4.10 7.81 -2.91 -0.02 4.07 16 15 C 0.03 1.45 5.30 84.65 0.45 1.90 16 16 N -0.89 -49.35 10.95 21.45 0.23 -49.11 16 17 Si 0.98 42.15 29.54 68.60 2.03 44.17 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 C -0.01 -0.44 5.54 24.83 0.14 -0.30 16 22 C -0.19 -9.44 9.17 22.19 0.20 -9.24 16 23 C -0.23 -9.22 10.91 22.19 0.24 -8.97 16 24 C -0.07 -2.68 12.09 66.97 0.81 -1.87 16 25 O -0.20 -9.40 10.65 -1.31 -0.01 -9.41 16 26 N -0.36 -10.60 6.94 -48.03 -0.33 -10.93 16 27 H 0.46 12.03 8.96 -220.00 -1.97 10.06 16 28 N -0.26 -7.19 11.47 -47.50 -0.55 -7.74 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.95 8.08 -2.38 -0.02 0.93 16 35 H 0.06 0.93 7.59 -2.39 -0.02 0.91 16 36 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.18 4.61 7.79 -2.91 -0.02 4.58 16 39 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.12 6.53 7.87 -2.91 -0.02 6.50 16 41 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 42 H 0.24 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -68.37 364.46 5.40 -62.96 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.93 Total: 29.47 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 5.19 Total: -16.95 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.64 Total: -67.78 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.24 Total: -51.88 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.37 5.40 -62.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347948047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.123 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds