Wall clock time and date at job start Tue Mar 31 2020 13:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 C 1.52998 * 109.47439 * 239.99828 * 2 1 3 5 5 C 1.50700 * 109.47189 * 119.99403 * 2 1 3 6 6 C 1.39642 * 126.05577 * 75.26115 * 5 2 1 7 7 C 1.38489 * 105.35843 * 180.13426 * 6 5 2 8 8 C 1.46997 * 126.89971 * 179.89425 * 7 6 5 9 9 O 1.21552 * 120.00110 * 359.71061 * 8 7 6 10 10 O 1.34819 * 120.00305 * 179.71030 * 8 7 6 11 11 C 1.45200 * 117.00151 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47059 * 330.00480 * 11 10 8 13 13 C 1.50700 * 109.46963 * 89.99840 * 11 10 8 14 14 H 1.07997 * 120.00402 * 240.00124 * 13 11 10 15 15 C 1.37881 * 119.99939 * 60.00095 * 13 11 10 16 16 N 1.31521 * 119.99804 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00162 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47236 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46771 * 120.00458 * 17 15 13 20 20 H 1.48494 * 109.47096 * 239.99785 * 17 15 13 21 21 C 1.50696 * 109.47394 * 210.00146 * 11 10 8 22 22 C 1.34512 * 125.79261 * 144.99949 * 21 11 10 23 23 C 1.41379 * 106.84086 * 180.02562 * 22 21 11 24 24 C 1.34512 * 106.84332 * 0.02562 * 23 22 21 25 25 O 1.34301 * 108.41872 * 359.97438 * 24 23 22 26 26 N 1.36654 * 106.20504 * 359.63319 * 7 6 5 27 27 H 0.97006 * 125.19121 * 180.27546 * 26 7 6 28 28 N 1.28435 * 109.61013 * 0.23889 * 26 7 6 29 29 H 1.08997 * 109.47090 * 300.00074 * 1 2 3 30 30 H 1.08997 * 109.47183 * 60.00352 * 1 2 3 31 31 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47143 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46997 * 299.99552 * 3 2 1 34 34 H 1.08997 * 109.47238 * 60.00017 * 3 2 1 35 35 H 1.09001 * 109.47413 * 300.00112 * 4 2 1 36 36 H 1.08997 * 109.47080 * 59.99757 * 4 2 1 37 37 H 1.08995 * 109.47542 * 179.97438 * 4 2 1 38 38 H 1.08005 * 127.32618 * 0.04180 * 6 5 2 39 39 H 0.96998 * 119.99743 * 179.97438 * 16 15 13 40 40 H 1.07996 * 126.57559 * 359.97438 * 22 21 11 41 41 H 1.08007 * 126.57604 * 180.02562 * 23 22 21 42 42 H 1.08004 * 125.79431 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0355 -2.0911 1.4388 7 6 2.5819 -2.2708 2.6986 8 6 2.8035 -3.5487 3.3904 9 8 2.4901 -4.5930 2.8531 10 8 3.3544 -3.5625 4.6208 11 6 3.5433 -4.8603 5.2440 12 1 2.7735 -5.5475 4.8928 13 6 4.9024 -5.3996 4.8793 14 1 4.9870 -6.3366 4.3490 15 6 6.0378 -4.6968 5.2227 16 7 5.9348 -3.5560 5.8689 17 14 7.7225 -5.3657 4.7713 18 1 7.5667 -6.6560 4.0532 19 1 8.4225 -4.3929 3.8942 20 1 8.5177 -5.5792 6.0070 21 6 3.4444 -4.7179 6.7410 22 6 2.9206 -5.6252 7.5846 23 6 3.0311 -5.0855 8.8867 24 6 3.6154 -3.8805 8.7608 25 8 3.8637 -3.6632 7.4590 26 7 2.8791 -1.0219 3.1670 27 1 3.2798 -0.8289 4.0291 28 7 2.5477 -0.1429 2.2913 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6849 -2.8563 0.7620 39 1 6.7336 -3.0618 6.1108 40 1 2.4962 -6.5819 7.3183 41 1 2.7083 -5.5515 9.8061 42 1 3.8464 -3.2029 9.5695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347948048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:21 Heat of formation + Delta-G solvation = -23.624889 kcal Electronic energy + Delta-G solvation = -26743.431313 eV Core-core repulsion = 22884.228136 eV Total energy + Delta-G solvation = -3859.203178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.64329 -43.07115 -40.84327 -37.82703 -37.42753 -35.00915 -33.59896 -32.29773 -32.01880 -31.39050 -28.47758 -28.10206 -28.02531 -25.84306 -24.32376 -23.60692 -22.35791 -21.75857 -21.25952 -20.10168 -19.29138 -18.85693 -18.32906 -17.43953 -17.00812 -16.85826 -16.57748 -16.28464 -15.98841 -15.74817 -15.09449 -14.89396 -14.69007 -14.60853 -14.39883 -13.75278 -13.58634 -13.39500 -13.11380 -13.07083 -13.03482 -12.91996 -12.89032 -12.47120 -12.35965 -12.26805 -12.01920 -11.92219 -11.85697 -11.65544 -11.39994 -11.11881 -10.86153 -10.52075 -10.27039 -10.17031 -9.11439 -8.29094 -6.58906 0.05195 1.13138 1.33174 1.35962 1.46428 1.48747 1.68298 1.88813 1.98659 2.08645 2.29252 2.55274 3.02086 3.38776 3.73247 3.81753 4.15965 4.19026 4.27984 4.35775 4.37761 4.41324 4.44372 4.59567 4.71079 4.88825 4.89832 4.99263 5.10603 5.11056 5.11575 5.16591 5.20944 5.29287 5.40071 5.48531 5.50745 5.52328 5.53080 5.67899 5.74441 5.88673 5.95013 6.44767 6.64469 6.86531 6.99925 7.18682 8.68553 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003790 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.811088 B = 7386.899789 C = 8172.933653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.132 4.132 4 C -0.139 4.139 5 C 0.035 3.965 6 C -0.149 4.149 7 C -0.028 4.028 8 C 0.528 3.472 9 O -0.534 6.534 10 O -0.344 6.344 11 C 0.280 3.720 12 H 0.064 0.936 13 C -0.574 4.574 14 H 0.064 0.936 15 C 0.045 3.955 16 N -0.844 5.844 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.272 1.272 21 C 0.040 3.960 22 C -0.261 4.261 23 C -0.219 4.219 24 C -0.081 4.081 25 O -0.146 6.146 26 N -0.361 5.361 27 H 0.456 0.544 28 N -0.269 5.269 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.175 0.825 39 H 0.269 0.731 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 8.252 -6.174 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 C -0.189 4.189 4 C -0.196 4.196 5 C -0.122 4.122 6 C -0.178 4.178 7 C -0.155 4.155 8 C 0.372 3.628 9 O -0.424 6.424 10 O -0.259 6.259 11 C 0.227 3.773 12 H 0.082 0.918 13 C -0.610 4.610 14 H 0.082 0.918 15 C -0.164 4.164 16 N -0.477 5.477 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.197 1.197 21 C -0.013 4.013 22 C -0.281 4.281 23 C -0.238 4.238 24 C -0.149 4.149 25 O -0.039 6.039 26 N -0.077 5.077 27 H 0.303 0.697 28 N -0.103 5.103 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.192 0.808 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.187 0.813 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.323 9.336 -5.829 13.220 hybrid contribution 1.156 -1.660 0.534 2.092 sum -6.167 7.676 -5.295 11.180 Atomic orbital electron populations 1.21864 0.92049 1.02570 1.02774 1.19100 0.96345 0.94928 0.88170 1.21755 1.00637 0.93929 1.02602 1.21899 1.00853 1.00792 0.96090 1.22445 1.02489 0.90984 0.96265 1.22194 1.03767 0.97697 0.94145 1.20894 1.11706 0.85146 0.97730 1.20050 0.73939 0.87601 0.81228 1.90748 1.50761 1.33713 1.67214 1.86776 1.70765 1.39746 1.28649 1.18730 0.97031 0.79388 0.82103 0.91793 1.21456 0.90500 1.08559 1.40480 0.91802 1.25767 1.02691 0.94819 0.93155 1.70135 1.30402 1.13109 1.34051 0.85565 0.79286 0.78876 0.78438 1.19254 1.20116 1.19690 1.22637 0.97307 0.87789 0.93544 1.21555 1.10790 1.02293 0.93424 1.21913 1.07066 0.96700 0.98119 1.24708 1.04519 1.00519 0.85130 1.84331 1.62360 1.39622 1.17586 1.43748 1.44754 1.02178 1.17068 0.69749 1.73074 1.16651 1.20039 1.00549 0.93318 0.89452 0.92314 0.93612 0.89946 0.92894 0.92003 0.89421 0.93407 0.80786 0.92164 0.83576 0.81271 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.46 71.98 0.61 -1.68 16 2 C 0.02 0.34 0.96 -52.93 -0.05 0.28 16 3 C -0.13 -2.48 8.04 71.98 0.58 -1.90 16 4 C -0.14 -2.42 8.20 71.98 0.59 -1.83 16 5 C 0.04 1.02 5.65 43.04 0.24 1.26 16 6 C -0.15 -4.85 10.12 22.67 0.23 -4.62 16 7 C -0.03 -1.07 7.21 40.75 0.29 -0.77 16 8 C 0.53 24.52 7.91 70.12 0.55 25.08 16 9 O -0.53 -26.59 16.18 19.67 0.32 -26.27 16 10 O -0.34 -17.36 9.26 -54.62 -0.51 -17.87 16 11 C 0.28 14.60 2.58 29.10 0.08 14.67 16 12 H 0.06 3.33 7.16 -2.39 -0.02 3.31 16 13 C -0.57 -31.77 8.91 25.60 0.23 -31.55 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.04 2.38 5.24 84.65 0.44 2.82 16 16 N -0.84 -45.45 10.64 21.45 0.23 -45.22 16 17 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 C 0.04 1.96 5.58 24.83 0.14 2.09 16 22 C -0.26 -11.16 10.81 22.19 0.24 -10.92 16 23 C -0.22 -7.94 10.91 22.19 0.24 -7.70 16 24 C -0.08 -3.03 12.09 66.97 0.81 -2.22 16 25 O -0.15 -6.98 8.89 1.06 0.01 -6.97 16 26 N -0.36 -12.51 6.94 -48.03 -0.33 -12.84 16 27 H 0.46 15.08 8.96 -220.00 -1.97 13.11 16 28 N -0.27 -8.54 11.47 -47.51 -0.55 -9.09 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.05 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.06 1.08 7.59 -2.39 -0.02 1.06 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.17 5.06 7.78 -2.91 -0.02 5.04 16 39 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 41 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.22 6.14 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -66.27 363.77 5.49 -60.77 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.93 Total: 29.99 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.22 Total: -16.98 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.65 Total: -67.15 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.18 Total: -51.11 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.27 5.49 -60.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347948048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.148 kcal (2) G-P(sol) polarization free energy of solvation -66.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds