Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38123 * 126.29992 * 2 1 4 4 C 1.47289 * 126.42515 * 0.02742 * 3 2 1 5 5 O 1.21532 * 119.99811 * 359.97438 * 4 3 2 6 6 O 1.34748 * 120.00261 * 179.97438 * 4 3 2 7 7 C 1.45200 * 117.00448 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46794 * 29.99886 * 7 6 4 9 9 C 1.50696 * 109.47202 * 149.99837 * 7 6 4 10 10 H 1.08003 * 119.99978 * 0.02562 * 9 7 6 11 11 C 1.37878 * 120.00064 * 180.02562 * 9 7 6 12 12 N 1.31519 * 119.99732 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00284 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46926 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47138 * 119.99991 * 13 11 9 16 16 H 1.48497 * 109.46952 * 240.00128 * 13 11 9 17 17 C 1.50698 * 109.47063 * 270.00383 * 7 6 4 18 18 C 1.34509 * 125.79308 * 145.00140 * 17 7 6 19 19 C 1.41381 * 106.84404 * 179.97438 * 18 17 7 20 20 C 1.34509 * 106.83927 * 0.02562 * 19 18 17 21 21 O 1.34297 * 108.42069 * 359.73486 * 20 19 18 22 22 C 1.41338 * 107.15037 * 180.02562 * 3 2 1 23 23 N 1.30442 * 108.01098 * 0.02562 * 22 3 2 24 24 N 1.34224 * 126.29399 * 180.02562 * 2 1 3 25 25 C 1.46509 * 125.74378 * 359.73526 * 24 2 1 26 26 C 1.52996 * 109.47073 * 120.00072 * 25 24 2 27 27 C 1.53001 * 109.46879 * 240.00019 * 25 24 2 28 28 H 1.08999 * 109.47115 * 269.99646 * 1 2 3 29 29 H 1.08997 * 109.46873 * 30.00013 * 1 2 3 30 30 H 1.08997 * 109.46934 * 149.99810 * 1 2 3 31 31 H 0.97003 * 119.99689 * 179.97438 * 12 11 9 32 32 H 1.08004 * 126.57616 * 0.02592 * 18 17 7 33 33 H 1.08003 * 126.57530 * 179.97438 * 19 18 17 34 34 H 1.08006 * 125.78664 * 180.02562 * 20 19 18 35 35 H 1.07996 * 126.00018 * 179.97438 * 22 3 2 36 36 H 1.08996 * 109.46585 * 359.97438 * 25 24 2 37 37 H 1.08998 * 109.47219 * 59.99730 * 26 25 24 38 38 H 1.08995 * 109.46956 * 180.02562 * 26 25 24 39 39 H 1.08997 * 109.47223 * 300.00166 * 26 25 24 40 40 H 1.09003 * 109.47028 * 60.00483 * 27 25 24 41 41 H 1.09003 * 109.46718 * 179.97438 * 27 25 24 42 42 H 1.08990 * 109.47173 * 299.99749 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8874 2.5196 0.0006 5 8 0.7019 2.7873 0.0006 6 8 2.8016 3.5095 0.0010 7 6 2.2984 4.8716 0.0010 8 1 1.3375 4.9039 0.5145 9 6 3.2783 5.7691 0.7119 10 1 4.1884 5.3571 1.1223 11 6 3.0130 7.1161 0.8384 12 7 1.9045 7.6177 0.3390 13 14 4.2279 8.2288 1.7189 14 1 5.3870 7.4257 2.1845 15 1 4.6997 9.2832 0.7857 16 1 3.5631 8.8621 2.8860 17 6 2.1248 5.3429 -1.4198 18 6 1.1551 6.1626 -1.8638 19 6 1.3713 6.3399 -3.2497 20 6 2.4599 5.6176 -3.5698 21 8 2.9153 5.0202 -2.4565 22 6 3.6599 0.6495 -0.0006 23 7 3.6340 -0.6546 -0.0015 24 7 2.3016 -1.0818 -0.0005 25 6 1.8497 -2.4755 0.0044 26 6 2.3739 -3.1859 -1.2452 27 6 2.3832 -3.1802 1.2533 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.7176 8.5654 0.4283 32 1 0.3637 6.6017 -1.2745 33 1 0.7761 6.9396 -3.9224 34 1 2.8967 5.5359 -4.5543 35 1 4.5462 1.2667 -0.0012 36 1 0.7602 -2.5041 0.0090 37 1 3.4635 -3.1572 -1.2493 38 1 2.0374 -4.2226 -1.2417 39 1 1.9939 -2.6839 -2.1349 40 1 2.0097 -2.6740 2.1435 41 1 2.0467 -4.2169 1.2571 42 1 3.4728 -3.1515 1.2491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = 0.089366 kcal Electronic energy + Delta-G solvation = -26753.087239 eV Core-core repulsion = 22894.912388 eV Total energy + Delta-G solvation = -3858.174850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41505 -41.25646 -38.99569 -35.88508 -35.50931 -33.23805 -32.34760 -31.62031 -30.36517 -29.41132 -27.61845 -27.39686 -26.52135 -23.69288 -22.93863 -22.14428 -20.53483 -19.88910 -19.28908 -19.09213 -17.35708 -16.80046 -16.45540 -15.99230 -15.57867 -15.31140 -14.79138 -14.67725 -14.58405 -14.39253 -13.98920 -13.41430 -13.18767 -13.01042 -12.78973 -12.74342 -12.50898 -12.45981 -12.16578 -11.92289 -11.71901 -11.65748 -11.51054 -11.46693 -11.22377 -11.06595 -10.93375 -10.62565 -10.30989 -9.99409 -9.57175 -9.33175 -9.32400 -8.77828 -8.58763 -8.48702 -7.18195 -6.16360 -4.34790 1.59644 2.27316 2.38038 2.94965 3.23796 3.30410 3.35182 3.69136 3.77724 4.02554 4.21011 4.26561 4.36668 4.54035 4.56632 4.65408 4.95601 5.01494 5.11585 5.20233 5.34981 5.40452 5.41063 5.49492 5.54573 5.69966 5.82866 5.86268 5.91698 6.00105 6.10278 6.18386 6.46312 6.62850 6.82848 6.90778 7.06522 7.24446 7.31093 7.48149 7.67644 7.75252 7.79197 7.93335 8.44793 8.62162 8.89324 9.32095 10.81014 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.003606 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.202493 B = 7762.723356 C = 8489.386980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.154 3.846 3 C -0.271 4.271 4 C 0.535 3.465 5 O -0.527 6.527 6 O -0.343 6.343 7 C 0.300 3.700 8 H 0.079 0.921 9 C -0.527 4.527 10 H 0.078 0.922 11 C 0.069 3.931 12 N -0.868 5.868 13 Si 0.913 3.087 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.023 3.977 18 C -0.176 4.176 19 C -0.219 4.219 20 C -0.091 4.091 21 O -0.178 6.178 22 C 0.105 3.895 23 N -0.303 5.303 24 N -0.359 5.359 25 C 0.152 3.848 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -17.821 -2.192 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.022 3.978 3 C -0.284 4.284 4 C 0.380 3.620 5 O -0.418 6.418 6 O -0.259 6.259 7 C 0.247 3.753 8 H 0.096 0.904 9 C -0.564 4.564 10 H 0.097 0.903 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.740 3.260 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.028 4.028 18 C -0.195 4.195 19 C -0.239 4.239 20 C -0.158 4.158 21 O -0.074 6.074 22 C -0.082 4.082 23 N -0.122 5.122 24 N -0.139 5.139 25 C 0.051 3.949 26 C -0.219 4.219 27 C -0.218 4.218 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.200 0.800 35 H 0.214 0.786 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.661 -18.932 -2.189 19.130 hybrid contribution -0.069 1.960 0.105 1.964 sum -1.730 -16.972 -2.084 17.187 Atomic orbital electron populations 1.20713 0.86218 1.04765 1.04178 1.21446 0.94773 0.86330 0.95224 1.19283 0.93336 0.91113 1.24624 1.19916 0.84227 0.85470 0.72358 1.90734 1.18197 1.84839 1.48039 1.86585 1.39187 1.17703 1.82433 1.19165 0.98443 0.72935 0.84770 0.90387 1.20952 1.07062 0.92174 1.36228 0.90340 1.24936 0.96000 0.97607 0.95141 1.70044 1.23748 1.13946 1.42568 0.86191 0.80754 0.80041 0.79054 1.19267 1.20735 1.20604 1.23602 0.89622 1.00769 0.88809 1.21277 1.02637 1.02829 0.92801 1.21707 1.00452 1.04869 0.96868 1.23579 0.99242 1.02525 0.90462 1.83992 1.48520 1.58796 1.16105 1.24221 0.97754 0.91315 0.94930 1.77113 0.95902 1.13209 1.25970 1.48620 1.04159 1.05510 1.55641 1.21389 0.99438 0.76539 0.97566 1.22131 1.03245 1.00254 0.96266 1.22125 1.03190 1.00276 0.96238 0.89480 0.87330 0.91315 0.92280 0.83692 0.85258 0.80027 0.78569 0.87917 0.90855 0.90641 0.91955 0.91930 0.90647 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.39 36.01 0.34 -0.85 16 2 C 0.15 2.27 7.01 -81.59 -0.57 1.69 16 3 C -0.27 -4.86 6.13 -105.08 -0.64 -5.50 16 4 C 0.54 11.71 7.92 34.41 0.27 11.99 16 5 O -0.53 -12.24 14.10 -19.29 -0.27 -12.52 16 6 O -0.34 -8.34 9.68 -43.39 -0.42 -8.76 16 7 C 0.30 8.04 2.42 -29.04 -0.07 7.97 16 8 H 0.08 2.22 7.16 -51.93 -0.37 1.85 16 9 C -0.53 -14.62 8.89 -34.44 -0.31 -14.92 16 10 H 0.08 2.14 7.81 -52.48 -0.41 1.73 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 12 N -0.87 -23.97 10.48 55.43 0.58 -23.39 16 13 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.02 0.60 5.67 -35.63 -0.20 0.40 16 18 C -0.18 -4.44 9.04 -39.70 -0.36 -4.80 16 19 C -0.22 -4.78 10.91 -39.71 -0.43 -5.22 16 20 C -0.09 -1.91 12.09 29.41 0.36 -1.55 16 21 O -0.18 -4.44 10.63 2.20 0.02 -4.42 16 22 C 0.11 1.71 11.87 -16.96 -0.20 1.51 16 23 N -0.30 -4.55 12.33 30.87 0.38 -4.17 16 24 N -0.36 -4.67 3.25 -50.15 -0.16 -4.83 16 25 C 0.15 1.32 3.62 -67.93 -0.25 1.08 16 26 C -0.16 -1.24 9.45 37.16 0.35 -0.89 16 27 C -0.16 -1.23 9.44 37.16 0.35 -0.88 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.11 1.54 6.50 -51.93 -0.34 1.21 16 30 H 0.07 0.58 7.08 -51.93 -0.37 0.21 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.15 3.76 7.49 -52.48 -0.39 3.36 16 33 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 34 H 0.18 2.92 8.06 -52.48 -0.42 2.50 16 35 H 0.20 2.89 8.06 -52.49 -0.42 2.46 16 36 H 0.10 0.68 6.63 -51.93 -0.34 0.33 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -32.67 362.63 -6.47 -39.14 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.59 Total: 5.72 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.46 Total: -8.22 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.80 Total: -32.39 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.67 Total: -25.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.67 -6.47 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.233 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds