Wall clock time and date at job start Tue Mar 31 2020 13:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38125 * 126.29219 * 2 1 4 4 C 1.47288 * 126.42973 * 359.97438 * 3 2 1 5 5 O 1.21523 * 119.99760 * 359.97438 * 4 3 2 6 6 O 1.34749 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.45202 * 116.99795 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.46728 * 329.99606 * 7 6 4 9 9 C 1.50706 * 109.47009 * 210.00061 * 7 6 4 10 10 H 1.07996 * 119.99753 * 359.97438 * 9 7 6 11 11 C 1.37874 * 119.99749 * 179.97438 * 9 7 6 12 12 N 1.31516 * 120.00411 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99813 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47004 * 60.00317 * 13 11 9 15 15 H 1.48498 * 109.46954 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47046 * 300.00030 * 13 11 9 17 17 C 1.50701 * 109.47526 * 89.99620 * 7 6 4 18 18 C 1.34509 * 125.78773 * 219.71823 * 17 7 6 19 19 C 1.41381 * 106.83998 * 179.89145 * 18 17 7 20 20 C 1.34521 * 106.83762 * 0.36814 * 19 18 17 21 21 O 1.34299 * 108.42162 * 359.77454 * 20 19 18 22 22 C 1.41344 * 107.14524 * 180.02562 * 3 2 1 23 23 N 1.30439 * 108.01444 * 359.75912 * 22 3 2 24 24 N 1.34219 * 126.29755 * 180.02562 * 2 1 3 25 25 C 1.46500 * 125.74535 * 359.95452 * 24 2 1 26 26 C 1.52997 * 109.47473 * 240.00448 * 25 24 2 27 27 C 1.53006 * 109.47249 * 120.00149 * 25 24 2 28 28 H 1.09003 * 109.46489 * 269.99146 * 1 2 3 29 29 H 1.08991 * 109.47436 * 29.99588 * 1 2 3 30 30 H 1.08997 * 109.47054 * 149.99844 * 1 2 3 31 31 H 0.96998 * 120.00448 * 179.97438 * 12 11 9 32 32 H 1.08001 * 126.58245 * 0.02562 * 18 17 7 33 33 H 1.07996 * 126.58441 * 180.16348 * 19 18 17 34 34 H 1.08009 * 125.78715 * 179.74983 * 20 19 18 35 35 H 1.07999 * 125.99661 * 179.97438 * 22 3 2 36 36 H 1.08998 * 109.46845 * 0.02562 * 25 24 2 37 37 H 1.09002 * 109.47153 * 59.99757 * 26 25 24 38 38 H 1.09001 * 109.46832 * 299.99948 * 26 25 24 39 39 H 1.09004 * 109.47261 * 179.97438 * 26 25 24 40 40 H 1.09001 * 109.47002 * 60.00085 * 27 25 24 41 41 H 1.08993 * 109.46955 * 180.02562 * 27 25 24 42 42 H 1.09000 * 109.47050 * 300.00351 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7017 2.7873 -0.0015 6 8 2.8014 3.5096 0.0001 7 6 2.2982 4.8716 0.0001 8 1 1.3376 4.9040 -0.5143 9 6 3.2786 5.7694 -0.7098 10 1 4.1890 5.3576 -1.1195 11 6 3.0133 7.1165 -0.8361 12 7 1.9048 7.6181 -0.3367 13 14 4.2289 8.2294 -1.7153 14 1 4.4021 7.7651 -3.1152 15 1 3.7136 9.6221 -1.7165 16 1 5.5370 8.1857 -1.0138 17 6 2.1233 5.3427 1.4209 18 6 1.1039 6.0892 1.8822 19 6 1.3379 6.2943 3.2614 20 6 2.4906 5.6678 3.5584 21 8 2.9618 5.0931 2.4398 22 6 3.6599 0.6497 -0.0006 23 7 3.6341 -0.6544 0.0043 24 7 2.3016 -1.0817 -0.0005 25 6 1.8499 -2.4754 -0.0002 26 6 2.3795 -3.1829 1.2488 27 6 2.3780 -3.1830 -1.2497 28 1 -0.3632 -0.0002 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.7183 8.5658 -0.4252 32 1 0.2661 6.4589 1.3096 33 1 0.7131 6.8504 3.9445 34 1 2.9581 5.6331 4.5315 35 1 4.5461 1.2669 -0.0012 36 1 0.7603 -2.5041 0.0001 37 1 2.0032 -2.6788 2.1390 38 1 3.4691 -3.1541 1.2481 39 1 2.0430 -4.2197 1.2492 40 1 3.4677 -3.1542 -1.2504 41 1 2.0416 -4.2197 -1.2497 42 1 2.0008 -2.6789 -2.1395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:47 Heat of formation + Delta-G solvation = -0.432066 kcal Electronic energy + Delta-G solvation = -26746.194420 eV Core-core repulsion = 22887.996958 eV Total energy + Delta-G solvation = -3858.197461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41703 -41.26328 -38.99997 -35.88583 -35.51077 -33.20725 -32.34938 -31.64923 -30.36768 -29.42193 -27.61879 -27.39948 -26.51233 -23.69223 -22.93997 -22.14843 -20.55089 -19.89223 -19.29061 -19.09385 -17.35771 -16.81303 -16.44436 -15.98668 -15.60949 -15.29401 -14.78617 -14.68599 -14.57815 -14.39827 -13.99052 -13.40333 -13.23321 -12.97191 -12.77596 -12.75009 -12.50972 -12.46081 -12.17579 -11.94247 -11.72262 -11.66005 -11.51367 -11.46452 -11.22676 -11.08618 -10.92031 -10.62753 -10.33146 -9.99624 -9.57145 -9.33686 -9.31957 -8.76553 -8.59615 -8.48733 -7.19817 -6.16244 -4.33714 1.59440 2.27129 2.37830 2.93929 3.27286 3.30351 3.32576 3.68189 3.77463 4.01787 4.21074 4.26561 4.37300 4.53917 4.56543 4.65266 4.95488 5.01384 5.12395 5.20165 5.34933 5.40382 5.40905 5.49546 5.54395 5.69853 5.82756 5.85684 5.91487 5.99914 6.09523 6.18034 6.44378 6.62549 6.82202 6.90567 7.04863 7.21240 7.29272 7.47366 7.67431 7.75696 7.75929 7.93572 8.43913 8.62333 8.88917 9.32937 10.82496 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.003605 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.327741 B = 7764.421609 C = 8485.922460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.154 3.846 3 C -0.271 4.271 4 C 0.535 3.465 5 O -0.526 6.526 6 O -0.344 6.344 7 C 0.300 3.700 8 H 0.079 0.921 9 C -0.530 4.530 10 H 0.077 0.923 11 C 0.070 3.930 12 N -0.868 5.868 13 Si 0.913 3.087 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.028 3.972 18 C -0.179 4.179 19 C -0.218 4.218 20 C -0.089 4.089 21 O -0.176 6.176 22 C 0.105 3.895 23 N -0.303 5.303 24 N -0.358 5.358 25 C 0.152 3.848 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.268 0.732 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -17.869 2.249 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.022 3.978 3 C -0.284 4.284 4 C 0.380 3.620 5 O -0.418 6.418 6 O -0.259 6.259 7 C 0.247 3.753 8 H 0.097 0.903 9 C -0.567 4.567 10 H 0.095 0.905 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.740 3.260 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.023 4.023 18 C -0.199 4.199 19 C -0.238 4.238 20 C -0.157 4.157 21 O -0.072 6.072 22 C -0.082 4.082 23 N -0.122 5.122 24 N -0.139 5.139 25 C 0.051 3.949 26 C -0.218 4.218 27 C -0.219 4.219 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.200 0.800 35 H 0.214 0.786 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.654 -18.954 2.245 19.158 hybrid contribution -0.084 1.941 -0.095 1.945 sum -1.737 -17.013 2.150 17.236 Atomic orbital electron populations 1.20713 0.86216 1.04776 1.04169 1.21446 0.94774 0.86332 0.95210 1.19287 0.93336 0.91118 1.24643 1.19917 0.84232 0.85471 0.72366 1.90731 1.18192 1.84841 1.48023 1.86591 1.39195 1.17709 1.82433 1.19151 0.98472 0.72927 0.84782 0.90342 1.20862 1.06989 0.92165 1.36676 0.90457 1.24930 0.95959 0.97591 0.95128 1.70023 1.23699 1.14085 1.42500 0.86305 0.80838 0.78905 0.79990 1.19747 1.21005 1.19862 1.23573 0.88322 1.01176 0.89193 1.21192 1.01822 1.03927 0.92923 1.21680 0.99266 1.05862 0.96986 1.23588 0.97871 1.03824 0.90418 1.83995 1.45984 1.60590 1.16653 1.24224 0.97754 0.91318 0.94926 1.77116 0.95900 1.13206 1.25969 1.48618 1.04161 1.05510 1.55635 1.21389 0.99441 0.76541 0.97568 1.22126 1.03206 1.00262 0.96246 1.22133 1.03229 1.00269 0.96254 0.89537 0.87295 0.91293 0.92172 0.84142 0.85238 0.79998 0.78566 0.87917 0.91954 0.90857 0.90640 0.90857 0.90645 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.40 36.01 0.34 -0.85 16 2 C 0.15 2.26 7.01 -81.59 -0.57 1.69 16 3 C -0.27 -4.86 6.13 -105.08 -0.64 -5.50 16 4 C 0.54 11.69 7.92 34.41 0.27 11.96 16 5 O -0.53 -12.21 14.10 -19.28 -0.27 -12.48 16 6 O -0.34 -8.34 9.70 -42.66 -0.41 -8.75 16 7 C 0.30 8.03 2.42 -29.03 -0.07 7.96 16 8 H 0.08 2.23 7.15 -51.92 -0.37 1.86 16 9 C -0.53 -14.72 8.89 -34.44 -0.31 -15.03 16 10 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 11 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 12 N -0.87 -24.12 10.92 55.43 0.61 -23.52 16 13 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.03 0.75 5.54 -35.63 -0.20 0.55 16 18 C -0.18 -4.51 9.16 -39.70 -0.36 -4.87 16 19 C -0.22 -4.75 10.91 -39.70 -0.43 -5.18 16 20 C -0.09 -1.89 12.09 29.42 0.36 -1.53 16 21 O -0.18 -4.41 10.65 4.50 0.05 -4.36 16 22 C 0.11 1.70 11.87 -16.96 -0.20 1.50 16 23 N -0.30 -4.55 12.33 30.87 0.38 -4.17 16 24 N -0.36 -4.66 3.25 -50.15 -0.16 -4.82 16 25 C 0.15 1.32 3.62 -67.93 -0.25 1.08 16 26 C -0.16 -1.23 9.44 37.16 0.35 -0.88 16 27 C -0.16 -1.23 9.45 37.16 0.35 -0.88 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.53 6.50 -51.93 -0.34 1.19 16 30 H 0.07 0.57 7.07 -51.93 -0.37 0.21 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.14 3.60 7.85 -52.49 -0.41 3.19 16 33 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.18 2.93 8.06 -52.48 -0.42 2.50 16 35 H 0.20 2.88 8.06 -52.49 -0.42 2.46 16 36 H 0.10 0.68 6.63 -51.93 -0.34 0.33 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -32.75 363.44 -6.42 -39.17 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.61 Total: 5.59 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.46 Total: -8.17 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.82 Total: -32.50 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.64 Total: -25.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.75 -6.42 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.736 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds