Wall clock time and date at job start Tue Mar 31 2020 13:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38125 * 126.29219 * 2 1 4 4 C 1.47288 * 126.42973 * 359.97438 * 3 2 1 5 5 O 1.21523 * 119.99760 * 359.97438 * 4 3 2 6 6 O 1.34749 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.45202 * 116.99795 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.46728 * 329.99606 * 7 6 4 9 9 C 1.50706 * 109.47009 * 210.00061 * 7 6 4 10 10 H 1.07996 * 119.99753 * 359.97438 * 9 7 6 11 11 C 1.37874 * 119.99749 * 179.97438 * 9 7 6 12 12 N 1.31516 * 120.00411 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99813 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47004 * 60.00317 * 13 11 9 15 15 H 1.48498 * 109.46954 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47046 * 300.00030 * 13 11 9 17 17 C 1.50701 * 109.47526 * 89.99620 * 7 6 4 18 18 C 1.34509 * 125.78773 * 219.71823 * 17 7 6 19 19 C 1.41381 * 106.83998 * 179.89145 * 18 17 7 20 20 C 1.34521 * 106.83762 * 0.36814 * 19 18 17 21 21 O 1.34299 * 108.42162 * 359.77454 * 20 19 18 22 22 C 1.41344 * 107.14524 * 180.02562 * 3 2 1 23 23 N 1.30439 * 108.01444 * 359.75912 * 22 3 2 24 24 N 1.34219 * 126.29755 * 180.02562 * 2 1 3 25 25 C 1.46500 * 125.74535 * 359.95452 * 24 2 1 26 26 C 1.52997 * 109.47473 * 240.00448 * 25 24 2 27 27 C 1.53006 * 109.47249 * 120.00149 * 25 24 2 28 28 H 1.09003 * 109.46489 * 269.99146 * 1 2 3 29 29 H 1.08991 * 109.47436 * 29.99588 * 1 2 3 30 30 H 1.08997 * 109.47054 * 149.99844 * 1 2 3 31 31 H 0.96998 * 120.00448 * 179.97438 * 12 11 9 32 32 H 1.08001 * 126.58245 * 0.02562 * 18 17 7 33 33 H 1.07996 * 126.58441 * 180.16348 * 19 18 17 34 34 H 1.08009 * 125.78715 * 179.74983 * 20 19 18 35 35 H 1.07999 * 125.99661 * 179.97438 * 22 3 2 36 36 H 1.08998 * 109.46845 * 0.02562 * 25 24 2 37 37 H 1.09002 * 109.47153 * 59.99757 * 26 25 24 38 38 H 1.09001 * 109.46832 * 299.99948 * 26 25 24 39 39 H 1.09004 * 109.47261 * 179.97438 * 26 25 24 40 40 H 1.09001 * 109.47002 * 60.00085 * 27 25 24 41 41 H 1.08993 * 109.46955 * 180.02562 * 27 25 24 42 42 H 1.09000 * 109.47050 * 300.00351 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7017 2.7873 -0.0015 6 8 2.8014 3.5096 0.0001 7 6 2.2982 4.8716 0.0001 8 1 1.3376 4.9040 -0.5143 9 6 3.2786 5.7694 -0.7098 10 1 4.1890 5.3576 -1.1195 11 6 3.0133 7.1165 -0.8361 12 7 1.9048 7.6181 -0.3367 13 14 4.2289 8.2294 -1.7153 14 1 4.4021 7.7651 -3.1152 15 1 3.7136 9.6221 -1.7165 16 1 5.5370 8.1857 -1.0138 17 6 2.1233 5.3427 1.4209 18 6 1.1039 6.0892 1.8822 19 6 1.3379 6.2943 3.2614 20 6 2.4906 5.6678 3.5584 21 8 2.9618 5.0931 2.4398 22 6 3.6599 0.6497 -0.0006 23 7 3.6341 -0.6544 0.0043 24 7 2.3016 -1.0817 -0.0005 25 6 1.8499 -2.4754 -0.0002 26 6 2.3795 -3.1829 1.2488 27 6 2.3780 -3.1830 -1.2497 28 1 -0.3632 -0.0002 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.7183 8.5658 -0.4252 32 1 0.2661 6.4589 1.3096 33 1 0.7131 6.8504 3.9445 34 1 2.9581 5.6331 4.5315 35 1 4.5461 1.2669 -0.0012 36 1 0.7603 -2.5041 0.0001 37 1 2.0032 -2.6788 2.1390 38 1 3.4691 -3.1541 1.2481 39 1 2.0430 -4.2197 1.2492 40 1 3.4677 -3.1542 -1.2504 41 1 2.0416 -4.2197 -1.2497 42 1 2.0008 -2.6789 -2.1395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:46 Heat of formation + Delta-G solvation = -19.439248 kcal Electronic energy + Delta-G solvation = -26747.018633 eV Core-core repulsion = 22887.996958 eV Total energy + Delta-G solvation = -3859.021675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.14642 -42.59420 -40.73993 -37.40691 -36.65470 -35.23648 -33.52084 -33.45878 -31.85442 -30.99569 -28.73764 -28.28902 -28.21333 -25.39452 -24.03977 -23.73661 -22.35924 -21.53629 -20.80358 -20.32709 -19.03879 -18.43063 -18.23840 -17.41335 -17.03127 -16.90862 -16.54008 -16.28310 -16.15086 -15.52766 -15.05154 -14.81921 -14.58059 -14.24557 -14.14254 -13.80643 -13.64891 -13.50969 -13.44485 -13.36753 -13.19537 -13.07613 -13.04478 -13.00330 -12.78051 -12.35634 -12.23825 -12.17564 -11.96245 -11.81709 -11.32939 -11.21574 -10.77192 -10.48971 -10.42159 -9.77388 -9.08883 -8.21113 -6.49297 0.32222 1.02100 1.11024 1.26911 1.41240 1.45408 1.52419 1.96648 2.18173 2.20071 2.44786 2.48764 3.03948 3.39858 3.50775 3.84042 3.91095 3.91635 4.07688 4.12893 4.24713 4.42726 4.46593 4.59467 4.61087 4.68326 4.68371 4.71544 4.80051 4.80490 4.89692 5.07951 5.17801 5.20219 5.23051 5.35180 5.40795 5.46537 5.49400 5.70929 5.86328 5.89416 6.01074 6.45802 6.51740 6.63425 7.02050 7.23144 8.75826 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.003605 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.327741 B = 7764.421609 C = 8485.922460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.169 3.831 3 C -0.312 4.312 4 C 0.529 3.471 5 O -0.551 6.551 6 O -0.354 6.354 7 C 0.304 3.696 8 H 0.044 0.956 9 C -0.557 4.557 10 H 0.073 0.927 11 C 0.026 3.974 12 N -0.890 5.890 13 Si 0.979 3.021 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.270 1.270 17 C -0.002 4.002 18 C -0.192 4.192 19 C -0.226 4.226 20 C -0.073 4.073 21 O -0.196 6.196 22 C 0.099 3.901 23 N -0.306 5.306 24 N -0.344 5.344 25 C 0.137 3.863 26 C -0.156 4.156 27 C -0.157 4.157 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.238 0.762 35 H 0.201 0.799 36 H 0.135 0.865 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -19.633 3.288 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.035 3.965 3 C -0.324 4.324 4 C 0.376 3.624 5 O -0.444 6.444 6 O -0.270 6.270 7 C 0.250 3.750 8 H 0.062 0.938 9 C -0.594 4.594 10 H 0.091 0.909 11 C -0.178 4.178 12 N -0.525 5.525 13 Si 0.802 3.198 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.195 1.195 17 C -0.053 4.053 18 C -0.211 4.211 19 C -0.245 4.245 20 C -0.140 4.140 21 O -0.093 6.093 22 C -0.088 4.088 23 N -0.125 5.125 24 N -0.124 5.124 25 C 0.038 3.962 26 C -0.214 4.214 27 C -0.214 4.214 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.184 0.816 34 H 0.254 0.746 35 H 0.218 0.782 36 H 0.152 0.848 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.590 -20.769 3.282 21.086 hybrid contribution -0.183 2.313 -0.352 2.346 sum -1.772 -18.456 2.931 18.771 Atomic orbital electron populations 1.20810 0.84025 1.05641 1.05234 1.21801 0.96004 0.85812 0.92919 1.19236 0.94976 0.89619 1.28595 1.20566 0.83791 0.86414 0.71583 1.90697 1.18906 1.85306 1.49455 1.86569 1.40010 1.17388 1.83040 1.18737 0.96651 0.74178 0.85454 0.93816 1.21122 1.07207 0.93181 1.37871 0.90892 1.25799 0.97734 0.98655 0.95574 1.70155 1.25010 1.14337 1.43008 0.85287 0.78389 0.77007 0.79078 1.18774 1.20097 1.19493 1.23364 0.89543 1.02849 0.89500 1.21268 1.01142 1.03809 0.94900 1.22036 1.00257 1.06538 0.95696 1.24662 0.97276 1.01133 0.90892 1.83966 1.46310 1.61487 1.17531 1.24305 0.97458 0.91867 0.95198 1.77079 0.97372 1.12320 1.25749 1.49088 1.03145 1.06830 1.53376 1.22014 1.01399 0.74103 0.98712 1.22121 1.02051 1.02023 0.95188 1.22130 1.02077 1.02032 0.95201 0.88188 0.89868 0.86933 0.92035 0.85870 0.81629 0.74593 0.78208 0.84776 0.92704 0.92579 0.87245 0.92590 0.87250 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.40 71.24 0.67 -1.53 16 2 C 0.17 4.87 7.01 42.17 0.30 5.16 16 3 C -0.31 -11.56 6.13 -20.16 -0.12 -11.68 16 4 C 0.53 24.62 7.92 70.20 0.56 25.17 16 5 O -0.55 -27.30 14.10 19.76 0.28 -27.02 16 6 O -0.35 -18.38 9.70 -54.65 -0.53 -18.91 16 7 C 0.30 17.33 2.42 29.10 0.07 17.40 16 8 H 0.04 2.73 7.15 -2.38 -0.02 2.72 16 9 C -0.56 -32.42 8.89 25.60 0.23 -32.19 16 10 H 0.07 4.16 7.81 -2.91 -0.02 4.14 16 11 C 0.03 1.43 5.30 84.65 0.45 1.88 16 12 N -0.89 -51.04 10.92 21.45 0.23 -50.81 16 13 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.00 -0.11 5.54 24.83 0.14 0.03 16 18 C -0.19 -9.93 9.16 22.19 0.20 -9.73 16 19 C -0.23 -9.57 10.91 22.19 0.24 -9.32 16 20 C -0.07 -2.95 12.09 66.97 0.81 -2.14 16 21 O -0.20 -9.91 10.65 -1.25 -0.01 -9.93 16 22 C 0.10 3.31 11.87 85.66 1.02 4.33 16 23 N -0.31 -9.11 12.33 -56.24 -0.69 -9.80 16 24 N -0.34 -8.45 3.25 -312.57 -1.02 -9.46 16 25 C 0.14 1.95 3.62 44.99 0.16 2.12 16 26 C -0.16 -1.94 9.44 71.98 0.68 -1.26 16 27 C -0.16 -1.94 9.45 71.98 0.68 -1.26 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.36 6.50 -2.39 -0.02 2.35 16 30 H 0.11 1.47 7.07 -2.39 -0.02 1.45 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.12 6.69 7.85 -2.91 -0.02 6.67 16 33 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 34 H 0.24 6.57 8.06 -2.91 -0.02 6.55 16 35 H 0.20 6.23 8.06 -2.91 -0.02 6.20 16 36 H 0.13 1.13 6.63 -2.39 -0.02 1.12 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -76.26 363.44 7.40 -68.86 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.03 Total: 24.33 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 6.08 Total: -13.03 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.47 Total: -70.07 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -0.26 Total: -55.85 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.26 7.40 -68.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.422 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds