Wall clock time and date at job start Tue Mar 31 2020 13:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 110.43822 * 2 1 4 4 O 1.21277 * 120.00410 * 239.29838 * 3 2 1 5 5 N 1.34783 * 119.99979 * 59.29784 * 3 2 1 6 6 C 1.46503 * 120.00340 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.46935 * 180.02562 * 6 5 3 8 8 C 1.38323 * 119.96578 * 90.00238 * 7 6 5 9 9 C 1.38278 * 120.13283 * 180.27073 * 8 7 6 10 10 C 1.38115 * 120.07300 * 359.44684 * 9 8 7 11 11 C 1.38858 * 119.92981 * 0.52730 * 10 9 8 12 12 O 1.35756 * 120.06979 * 179.76669 * 11 10 9 13 13 C 1.34824 * 117.00195 * 354.44124 * 12 11 10 14 14 H 1.08008 * 119.99737 * 5.05937 * 13 12 11 15 15 C 1.38644 * 120.00377 * 185.05149 * 13 12 11 16 16 N 1.31561 * 120.00539 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99864 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 89.99608 * 17 15 13 19 19 H 1.48503 * 109.47316 * 209.99664 * 17 15 13 20 20 H 1.48506 * 109.47204 * 329.99756 * 17 15 13 21 21 C 1.38082 * 119.96014 * 269.97357 * 7 6 5 22 22 C 1.54625 * 110.48614 * 237.45858 * 2 1 3 23 23 C 1.54831 * 101.60559 * 216.43322 * 22 2 1 24 24 N 1.46760 * 105.49581 * 25.43168 * 23 22 2 25 25 C 1.34417 * 111.29729 * 342.96561 * 24 23 22 26 26 O 1.21289 * 124.94065 * 180.44369 * 25 24 23 27 27 H 1.09009 * 109.47021 * 60.69945 * 1 2 3 28 28 H 1.09004 * 109.47356 * 180.69559 * 1 2 3 29 29 H 1.08992 * 109.47264 * 300.70218 * 1 2 3 30 30 H 0.96999 * 119.99716 * 0.02562 * 5 3 2 31 31 H 1.08994 * 109.46758 * 59.99734 * 6 5 3 32 32 H 1.09006 * 109.46690 * 300.00215 * 6 5 3 33 33 H 1.07992 * 119.93347 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.96025 * 179.70065 * 9 8 7 35 35 H 1.08003 * 120.03674 * 180.27179 * 10 9 8 36 36 H 0.96993 * 120.00161 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.03776 * 359.97438 * 21 7 6 38 38 H 1.09002 * 110.97394 * 334.50946 * 22 2 1 39 39 H 1.08997 * 110.97044 * 98.27414 * 22 2 1 40 40 H 1.09010 * 110.25184 * 266.41878 * 23 22 2 41 41 H 1.09001 * 110.29592 * 144.47380 * 23 22 2 42 42 H 0.96995 * 124.35177 * 162.98342 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7704 1.7931 -0.9030 5 7 1.7330 2.2517 1.0036 6 6 2.2441 3.6247 1.0034 7 6 1.7403 4.3483 2.2255 8 6 2.4754 4.3207 3.3969 9 6 2.0136 4.9788 4.5219 10 6 0.8220 5.6756 4.4759 11 6 0.0820 5.7057 3.3013 12 8 -1.0919 6.3858 3.2542 13 6 -1.5406 6.9134 4.4110 14 1 -0.9328 6.8564 5.3020 15 6 -2.7819 7.5293 4.4567 16 7 -3.2194 8.0446 5.5854 17 14 -3.8331 7.6274 2.9158 18 1 -4.7069 6.4293 2.8354 19 1 -4.6738 8.8506 2.9670 20 1 -2.9546 7.6804 1.7196 21 6 0.5456 5.0388 2.1744 22 6 2.0711 -0.7791 -1.2211 23 6 3.3232 -1.4657 -0.6225 24 7 3.0582 -1.5787 0.8165 25 6 2.0594 -0.7624 1.1946 26 8 1.6437 -0.6524 2.3287 27 1 -0.3633 0.5030 -0.8963 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8835 30 1 1.1621 1.9468 1.7261 31 1 1.8994 4.1405 0.1073 32 1 3.3340 3.6066 1.0157 33 1 3.4095 3.7800 3.4343 34 1 2.5875 4.9513 5.4365 35 1 0.4641 6.1931 5.3537 36 1 -4.0880 8.4751 5.6174 37 1 -0.0274 5.0608 1.2593 38 1 1.3470 -1.5180 -1.5646 39 1 2.3448 -0.0991 -2.0277 40 1 4.2084 -0.8536 -0.7961 41 1 3.4575 -2.4549 -1.0602 42 1 3.5417 -2.1666 1.4176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352216846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:06 Heat of formation + Delta-G solvation = -73.986375 kcal Electronic energy + Delta-G solvation = -26161.467098 eV Core-core repulsion = 22300.080082 eV Total energy + Delta-G solvation = -3861.387016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46432 -39.45504 -38.88577 -37.07486 -36.56520 -34.65543 -33.52016 -32.43082 -30.86055 -29.45251 -29.01376 -26.36065 -25.61489 -25.08377 -22.70410 -21.91345 -21.76544 -20.72580 -19.63548 -18.04572 -17.72321 -17.60594 -17.08307 -16.06027 -15.76591 -15.40424 -15.22860 -15.07318 -14.65751 -14.25633 -14.04044 -14.00957 -13.86425 -13.80112 -13.42566 -13.05500 -12.79405 -12.63397 -12.55988 -12.52086 -12.21796 -12.04623 -11.76160 -11.49359 -11.45880 -10.93600 -10.84167 -10.80503 -10.29119 -10.19869 -9.93219 -9.49449 -9.45392 -9.12324 -8.92024 -8.32820 -7.47112 -6.45350 -4.12722 1.78474 2.06363 2.16599 2.44546 2.95458 3.19226 3.22591 3.26121 3.37840 3.84121 4.00503 4.20442 4.31076 4.43082 4.61733 4.63983 4.68408 4.92231 5.04630 5.09463 5.12673 5.32433 5.35934 5.40420 5.49651 5.61785 5.64374 5.74191 5.78577 5.81255 6.01765 6.15535 6.32664 6.35524 6.42393 6.58213 6.68165 6.99963 7.11457 7.21522 7.39337 7.51613 7.74124 7.84484 7.98443 8.02811 8.89548 9.50449 10.62164 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002936 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.601179 B = 9533.955104 C =10009.213143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 C 0.533 3.467 4 O -0.536 6.536 5 N -0.710 5.710 6 C 0.168 3.832 7 C -0.077 4.077 8 C -0.183 4.183 9 C -0.077 4.077 10 C -0.211 4.211 11 C 0.156 3.844 12 O -0.216 6.216 13 C -0.391 4.391 14 H 0.107 0.893 15 C 0.064 3.936 16 N -0.878 5.878 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.170 4.170 22 C -0.117 4.117 23 C 0.099 3.901 24 N -0.729 5.729 25 C 0.531 3.469 26 O -0.513 6.513 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.269 -18.660 -12.753 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 C 0.317 3.683 4 O -0.413 6.413 5 N -0.361 5.361 6 C 0.045 3.955 7 C -0.078 4.078 8 C -0.203 4.203 9 C -0.095 4.095 10 C -0.230 4.230 11 C 0.104 3.896 12 O -0.121 6.121 13 C -0.466 4.466 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.516 5.516 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.190 4.190 22 C -0.155 4.155 23 C -0.025 4.025 24 N -0.385 5.385 25 C 0.315 3.685 26 O -0.388 6.388 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.156 -18.041 -12.935 24.844 hybrid contribution -0.510 -0.257 0.312 0.651 sum 10.646 -18.298 -12.623 24.647 Atomic orbital electron populations 1.21707 0.89376 1.03725 1.04052 1.21638 0.99796 0.94174 0.97077 1.19663 0.80537 0.85883 0.82195 1.90684 1.37464 1.77093 1.36107 1.46159 1.51854 1.12535 1.25554 1.20204 0.98614 0.80280 0.96378 1.19234 0.95037 0.99127 0.94386 1.20545 1.01064 1.05463 0.93221 1.20801 0.95328 0.95954 0.97422 1.21369 0.96875 1.05362 0.99409 1.19046 0.86687 0.90566 0.93274 1.83572 1.32404 1.60721 1.35372 1.20762 1.03230 1.35825 0.86808 0.87598 1.24464 0.96080 0.95344 0.98041 1.69643 1.20423 1.36230 1.25292 0.86184 0.79983 0.77838 0.82917 1.19837 1.20747 1.18336 1.20064 0.97755 1.03246 0.97927 1.22769 0.96587 0.99314 0.96803 1.22201 0.98876 1.01664 0.79786 1.46142 1.37107 1.44106 1.11104 1.20334 0.79688 0.79677 0.88844 1.90812 1.60913 1.65916 1.21133 0.90619 0.90966 0.90655 0.75399 0.90535 0.90783 0.87366 0.86937 0.84789 0.90983 0.86345 0.89102 0.87153 0.90440 0.89815 0.74780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.31 37.15 0.31 -0.85 16 2 C -0.12 -1.19 0.74 -155.68 -0.12 -1.31 16 3 C 0.53 6.78 6.55 -10.99 -0.07 6.71 16 4 O -0.54 -7.88 15.46 5.56 0.09 -7.79 16 5 N -0.71 -9.48 5.41 -61.47 -0.33 -9.81 16 6 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 7 C -0.08 -1.27 5.25 -104.65 -0.55 -1.82 16 8 C -0.18 -3.02 9.70 -39.54 -0.38 -3.40 16 9 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 10 C -0.21 -4.44 9.17 -39.40 -0.36 -4.80 16 11 C 0.16 3.52 6.65 -39.11 -0.26 3.26 16 12 O -0.22 -5.58 8.59 0.05 0.00 -5.58 16 13 C -0.39 -10.86 9.95 30.88 0.31 -10.55 16 14 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 15 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -25.17 13.96 55.48 0.77 -24.39 16 17 Si 0.91 21.44 28.62 -169.99 -4.86 16.57 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.17 -3.25 9.65 -39.39 -0.38 -3.63 16 22 C -0.12 -0.81 6.06 -24.91 -0.15 -0.96 16 23 C 0.10 0.59 7.79 -2.94 -0.02 0.57 16 24 N -0.73 -5.79 6.24 -59.01 -0.37 -6.16 16 25 C 0.53 5.97 7.13 -10.86 -0.08 5.89 16 26 O -0.51 -7.61 17.83 5.55 0.10 -7.52 16 27 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 30 H 0.41 5.59 7.86 -40.82 -0.32 5.27 16 31 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.13 2.97 5.64 -52.48 -0.30 2.67 16 36 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 0.44 7.91 -51.93 -0.41 0.03 16 39 H 0.11 0.85 6.94 -51.93 -0.36 0.49 16 40 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.41 2.58 8.96 -40.82 -0.37 2.21 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -32.41 357.26 -6.87 -39.28 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.37 Total: 8.66 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.28 Total: -8.64 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.07 Total: -40.36 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.19 Total: -20.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.41 -6.87 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352216846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.711 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds