Wall clock time and date at job start Tue Mar 31 2020 13:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 110.43822 * 2 1 4 4 O 1.21277 * 120.00410 * 239.29838 * 3 2 1 5 5 N 1.34783 * 119.99979 * 59.29784 * 3 2 1 6 6 C 1.46503 * 120.00340 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.46935 * 180.02562 * 6 5 3 8 8 C 1.38323 * 119.96578 * 90.00238 * 7 6 5 9 9 C 1.38278 * 120.13283 * 180.27073 * 8 7 6 10 10 C 1.38115 * 120.07300 * 359.44684 * 9 8 7 11 11 C 1.38858 * 119.92981 * 0.52730 * 10 9 8 12 12 O 1.35756 * 120.06979 * 179.76669 * 11 10 9 13 13 C 1.34824 * 117.00195 * 354.44124 * 12 11 10 14 14 H 1.08008 * 119.99737 * 5.05937 * 13 12 11 15 15 C 1.38644 * 120.00377 * 185.05149 * 13 12 11 16 16 N 1.31561 * 120.00539 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99864 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 89.99608 * 17 15 13 19 19 H 1.48503 * 109.47316 * 209.99664 * 17 15 13 20 20 H 1.48506 * 109.47204 * 329.99756 * 17 15 13 21 21 C 1.38082 * 119.96014 * 269.97357 * 7 6 5 22 22 C 1.54625 * 110.48614 * 237.45858 * 2 1 3 23 23 C 1.54831 * 101.60559 * 216.43322 * 22 2 1 24 24 N 1.46760 * 105.49581 * 25.43168 * 23 22 2 25 25 C 1.34417 * 111.29729 * 342.96561 * 24 23 22 26 26 O 1.21289 * 124.94065 * 180.44369 * 25 24 23 27 27 H 1.09009 * 109.47021 * 60.69945 * 1 2 3 28 28 H 1.09004 * 109.47356 * 180.69559 * 1 2 3 29 29 H 1.08992 * 109.47264 * 300.70218 * 1 2 3 30 30 H 0.96999 * 119.99716 * 0.02562 * 5 3 2 31 31 H 1.08994 * 109.46758 * 59.99734 * 6 5 3 32 32 H 1.09006 * 109.46690 * 300.00215 * 6 5 3 33 33 H 1.07992 * 119.93347 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.96025 * 179.70065 * 9 8 7 35 35 H 1.08003 * 120.03674 * 180.27179 * 10 9 8 36 36 H 0.96993 * 120.00161 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.03776 * 359.97438 * 21 7 6 38 38 H 1.09002 * 110.97394 * 334.50946 * 22 2 1 39 39 H 1.08997 * 110.97044 * 98.27414 * 22 2 1 40 40 H 1.09010 * 110.25184 * 266.41878 * 23 22 2 41 41 H 1.09001 * 110.29592 * 144.47380 * 23 22 2 42 42 H 0.96995 * 124.35177 * 162.98342 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7704 1.7931 -0.9030 5 7 1.7330 2.2517 1.0036 6 6 2.2441 3.6247 1.0034 7 6 1.7403 4.3483 2.2255 8 6 2.4754 4.3207 3.3969 9 6 2.0136 4.9788 4.5219 10 6 0.8220 5.6756 4.4759 11 6 0.0820 5.7057 3.3013 12 8 -1.0919 6.3858 3.2542 13 6 -1.5406 6.9134 4.4110 14 1 -0.9328 6.8564 5.3020 15 6 -2.7819 7.5293 4.4567 16 7 -3.2194 8.0446 5.5854 17 14 -3.8331 7.6274 2.9158 18 1 -4.7069 6.4293 2.8354 19 1 -4.6738 8.8506 2.9670 20 1 -2.9546 7.6804 1.7196 21 6 0.5456 5.0388 2.1744 22 6 2.0711 -0.7791 -1.2211 23 6 3.3232 -1.4657 -0.6225 24 7 3.0582 -1.5787 0.8165 25 6 2.0594 -0.7624 1.1946 26 8 1.6437 -0.6524 2.3287 27 1 -0.3633 0.5030 -0.8963 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8835 30 1 1.1621 1.9468 1.7261 31 1 1.8994 4.1405 0.1073 32 1 3.3340 3.6066 1.0157 33 1 3.4095 3.7800 3.4343 34 1 2.5875 4.9513 5.4365 35 1 0.4641 6.1931 5.3537 36 1 -4.0880 8.4751 5.6174 37 1 -0.0274 5.0608 1.2593 38 1 1.3470 -1.5180 -1.5646 39 1 2.3448 -0.0991 -2.0277 40 1 4.2084 -0.8536 -0.7961 41 1 3.4575 -2.4549 -1.0602 42 1 3.5417 -2.1666 1.4176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352216846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:05 Heat of formation + Delta-G solvation = -98.049533 kcal Electronic energy + Delta-G solvation = -26162.510555 eV Core-core repulsion = 22300.080082 eV Total energy + Delta-G solvation = -3862.430472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29056 -41.00895 -39.99665 -38.61997 -37.44451 -35.84506 -34.48132 -34.27575 -32.21496 -31.02115 -29.69591 -27.64699 -27.05317 -26.30812 -23.62047 -23.26307 -22.65145 -22.25548 -20.62686 -19.69699 -19.09879 -18.49180 -18.32902 -17.14815 -16.92351 -16.84179 -16.41700 -16.23604 -15.87026 -15.69952 -15.53929 -15.07473 -14.91946 -14.71751 -14.68508 -14.43856 -14.22401 -13.89126 -13.70489 -13.45249 -13.33163 -13.22556 -13.13703 -12.60431 -12.50228 -12.43889 -12.29638 -12.14037 -11.95503 -11.37006 -11.21258 -10.93834 -10.85958 -10.21433 -10.14749 -9.82615 -9.15954 -8.51266 -6.24528 0.30229 0.60801 1.15780 1.31224 1.34917 1.50906 1.51572 2.14117 2.27071 2.36802 2.76362 2.98567 3.09721 3.15457 3.35447 3.57559 3.72312 3.89540 4.01793 4.07234 4.22862 4.35995 4.39993 4.44756 4.58303 4.64912 4.65437 4.70535 4.76466 4.88108 5.01705 5.09008 5.13274 5.15024 5.26471 5.34504 5.58104 5.64475 5.70783 5.71911 5.86047 5.90697 6.15626 6.35098 6.82895 6.99179 7.11699 7.55586 8.60264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002936 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.601179 B = 9533.955104 C =10009.213143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 C 0.533 3.467 4 O -0.555 6.555 5 N -0.713 5.713 6 C 0.173 3.827 7 C -0.065 4.065 8 C -0.162 4.162 9 C -0.075 4.075 10 C -0.228 4.228 11 C 0.121 3.879 12 O -0.243 6.243 13 C -0.400 4.400 14 H 0.082 0.918 15 C 0.011 3.989 16 N -0.923 5.923 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.262 1.262 21 C -0.167 4.167 22 C -0.112 4.112 23 C 0.097 3.903 24 N -0.716 5.716 25 C 0.523 3.477 26 O -0.558 6.558 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.285 0.715 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.022 -21.247 -15.317 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C 0.318 3.682 4 O -0.434 6.434 5 N -0.364 5.364 6 C 0.050 3.950 7 C -0.065 4.065 8 C -0.181 4.181 9 C -0.093 4.093 10 C -0.247 4.247 11 C 0.072 3.928 12 O -0.150 6.150 13 C -0.476 4.476 14 H 0.100 0.900 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.187 1.187 21 C -0.187 4.187 22 C -0.150 4.150 23 C -0.026 4.026 24 N -0.371 5.371 25 C 0.308 3.692 26 O -0.437 6.437 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.244 0.756 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 12.975 -20.675 -15.529 28.931 hybrid contribution -0.712 0.342 1.061 1.323 sum 12.263 -20.333 -14.468 27.805 Atomic orbital electron populations 1.21740 0.88766 1.04717 1.03647 1.21687 1.00320 0.92435 0.98127 1.20104 0.79926 0.86778 0.81375 1.90676 1.38304 1.77756 1.36659 1.46156 1.52004 1.12304 1.25916 1.20140 0.99215 0.80587 0.95019 1.19494 0.93676 0.97804 0.95553 1.21011 1.01600 1.03319 0.92197 1.21124 0.94071 0.94768 0.99308 1.21400 0.98440 1.06426 0.98443 1.19558 0.86347 0.91885 0.95050 1.83517 1.34334 1.62933 1.34223 1.20706 1.03470 1.36374 0.87061 0.90030 1.25268 0.97235 0.95156 1.01090 1.69726 1.21330 1.38081 1.27199 0.85231 0.78249 0.78501 0.78832 1.19026 1.19238 1.18657 1.20284 0.98632 1.02621 0.97169 1.22860 0.97495 0.99426 0.95239 1.22414 0.98192 1.03623 0.78385 1.46195 1.35740 1.42903 1.12292 1.20578 0.80145 0.80055 0.88449 1.90786 1.62543 1.67534 1.22808 0.89630 0.89298 0.92475 0.75555 0.90190 0.89485 0.83890 0.83948 0.87074 0.90536 0.85446 0.86416 0.87689 0.90723 0.86171 0.73811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.31 71.98 0.60 -1.48 16 2 C -0.12 -2.09 0.74 -52.94 -0.04 -2.13 16 3 C 0.53 12.44 6.55 87.65 0.57 13.01 16 4 O -0.56 -15.04 15.46 -3.02 -0.05 -15.08 16 5 N -0.71 -17.65 5.41 -466.79 -2.52 -20.17 16 6 C 0.17 4.42 5.80 85.63 0.50 4.91 16 7 C -0.06 -1.99 5.25 -19.88 -0.10 -2.10 16 8 C -0.16 -4.85 9.70 22.30 0.22 -4.63 16 9 C -0.07 -2.54 10.04 22.25 0.22 -2.31 16 10 C -0.23 -9.86 9.17 22.39 0.21 -9.66 16 11 C 0.12 5.57 6.65 22.58 0.15 5.72 16 12 O -0.24 -13.07 8.59 -22.75 -0.20 -13.26 16 13 C -0.40 -23.47 9.95 67.92 0.68 -22.79 16 14 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 15 C 0.01 0.64 5.49 84.83 0.47 1.10 16 16 N -0.92 -55.13 13.96 21.61 0.30 -54.82 16 17 Si 0.97 45.30 28.62 68.60 1.96 47.27 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 21 C -0.17 -6.30 9.65 22.39 0.22 -6.09 16 22 C -0.11 -1.18 6.06 31.77 0.19 -0.99 16 23 C 0.10 0.80 7.79 86.96 0.68 1.48 16 24 N -0.72 -9.39 6.24 -459.19 -2.87 -12.26 16 25 C 0.52 10.76 7.13 87.90 0.63 11.39 16 26 O -0.56 -16.08 17.83 -3.06 -0.05 -16.14 16 27 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 1.12 7.59 -2.39 -0.02 1.10 16 30 H 0.41 10.60 7.86 -92.71 -0.73 9.87 16 31 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 32 H 0.09 2.05 8.08 -2.38 -0.02 2.03 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.11 5.29 5.64 -2.91 -0.02 5.28 16 36 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.12 0.62 7.91 -2.39 -0.02 0.60 16 39 H 0.10 1.30 6.94 -2.39 -0.02 1.28 16 40 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.42 4.16 8.96 -92.71 -0.83 3.33 16 Total: -1.00 -73.79 357.26 1.27 -72.52 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.48 Total: 26.51 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.17 Total: -14.56 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -5.09 Total: -87.25 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.30 Total: -44.48 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.96 Total: 47.27 kcal Total: -73.79 1.27 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352216846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.533 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds