Wall clock time and date at job start Tue Mar 31 2020 13:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 110.43488 * 2 1 4 4 O 1.21287 * 120.00052 * 118.91140 * 3 2 1 5 5 N 1.34774 * 120.00089 * 298.91524 * 3 2 1 6 6 C 1.46507 * 120.00192 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47136 * 179.97438 * 6 5 3 8 8 C 1.38328 * 119.96669 * 90.00566 * 7 6 5 9 9 C 1.38275 * 120.13894 * 180.02562 * 8 7 6 10 10 C 1.38123 * 120.07124 * 359.97438 * 9 8 7 11 11 C 1.38850 * 119.92843 * 359.97438 * 10 9 8 12 12 O 1.35756 * 120.06995 * 179.97438 * 11 10 9 13 13 C 1.34823 * 116.99547 * 354.47384 * 12 11 10 14 14 H 1.07999 * 120.00661 * 5.04963 * 13 12 11 15 15 C 1.38660 * 120.00065 * 185.05555 * 13 12 11 16 16 N 1.31566 * 119.99424 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00414 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47019 * 59.99808 * 17 15 13 19 19 H 1.48500 * 109.47366 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47243 * 299.99968 * 17 15 13 21 21 C 1.38084 * 119.96751 * 269.99904 * 7 6 5 22 22 C 1.54627 * 110.60178 * 122.61960 * 2 1 3 23 23 C 1.54482 * 101.76609 * 143.53186 * 22 2 1 24 24 N 1.46759 * 105.47331 * 334.58541 * 23 22 2 25 25 C 1.34419 * 111.30399 * 17.01754 * 24 23 22 26 26 O 1.21276 * 124.94439 * 179.56140 * 25 24 23 27 27 H 1.09000 * 109.47102 * 59.30263 * 1 2 3 28 28 H 1.09002 * 109.46695 * 179.29360 * 1 2 3 29 29 H 1.08997 * 109.47364 * 299.29669 * 1 2 3 30 30 H 0.96994 * 120.00142 * 359.97438 * 5 3 2 31 31 H 1.09001 * 109.46571 * 59.99863 * 6 5 3 32 32 H 1.08999 * 109.46770 * 300.00355 * 6 5 3 33 33 H 1.08000 * 119.92761 * 0.27195 * 8 7 6 34 34 H 1.08002 * 119.96519 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.03256 * 179.97438 * 10 9 8 36 36 H 0.96997 * 119.99635 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.02758 * 0.02562 * 21 7 6 38 38 H 1.08996 * 110.97234 * 261.65098 * 22 2 1 39 39 H 1.08999 * 110.97051 * 25.41236 * 22 2 1 40 40 H 1.09000 * 110.24694 * 215.58218 * 23 22 2 41 41 H 1.09008 * 110.31680 * 93.62533 * 23 22 2 42 42 H 0.97003 * 124.34676 * 197.03431 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7437 1.8031 0.9195 5 7 1.7626 2.2407 -1.0217 6 6 2.2736 3.6137 -1.0214 7 6 1.8059 4.3240 -2.2654 8 6 0.6080 5.0157 -2.2571 9 6 0.1751 5.6683 -3.3967 10 6 0.9384 5.6317 -4.5473 11 6 2.1418 4.9392 -4.5586 12 8 2.8941 4.9009 -5.6880 13 6 2.3638 5.4576 -6.7956 14 1 1.4193 5.9782 -6.7392 15 6 3.0311 5.3615 -8.0073 16 7 4.1819 4.7276 -8.0759 17 14 2.2963 6.1321 -9.5420 18 1 2.1379 7.5940 -9.3346 19 1 3.1979 5.8913 -10.6972 20 1 0.9690 5.5241 -9.8143 21 6 2.5735 4.2838 -3.4125 22 6 2.0741 -0.7802 1.2191 23 6 3.3234 -1.4656 0.6224 24 7 3.0583 -1.5785 -0.8166 25 6 2.0595 -0.7622 -1.1947 26 8 1.6438 -0.6524 -2.3287 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0127 29 1 -0.3634 0.5028 0.8962 30 1 1.2130 1.9279 -1.7571 31 1 3.3633 3.5957 -1.0016 32 1 1.9029 4.1391 -0.1413 33 1 0.0116 5.0494 -1.3573 34 1 -0.7604 6.2079 -3.3869 35 1 0.5996 6.1413 -5.4372 36 1 4.6489 4.6607 -8.9235 37 1 3.5085 3.7434 -3.4185 38 1 2.3497 -0.1009 2.0257 39 1 1.3508 -1.5193 1.5636 40 1 3.4562 -2.4549 1.0603 41 1 4.2094 -0.8548 0.7960 42 1 3.5416 -2.1668 -1.4176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352216848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:11 Heat of formation + Delta-G solvation = -75.551582 kcal Electronic energy + Delta-G solvation = -26171.158522 eV Core-core repulsion = 22309.703634 eV Total energy + Delta-G solvation = -3861.454888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38959 -39.31318 -38.76162 -36.91046 -36.45946 -34.56338 -33.44789 -32.30821 -30.76512 -29.21792 -28.92069 -26.32056 -25.60057 -25.06206 -22.61378 -21.81607 -21.65277 -20.80261 -19.58686 -18.03324 -17.57493 -17.44959 -16.95588 -15.98285 -15.70582 -15.26751 -15.17145 -14.85269 -14.47886 -14.39668 -14.07855 -13.92931 -13.86053 -13.62966 -13.37742 -13.01312 -12.75823 -12.59799 -12.49133 -12.40209 -12.14060 -11.70459 -11.65008 -11.45754 -11.36683 -10.92159 -10.81390 -10.69236 -10.47450 -10.20044 -9.85373 -9.39805 -9.38327 -9.04551 -8.86456 -8.22633 -7.30644 -6.46524 -4.06052 1.88882 2.15216 2.29590 2.53425 3.05516 3.12166 3.13244 3.16368 3.32458 3.90210 3.94948 4.08007 4.37620 4.52104 4.69629 4.72121 4.93954 4.98517 5.09647 5.18706 5.26233 5.34934 5.37697 5.53322 5.55613 5.69359 5.72833 5.79034 5.84098 5.89570 6.09353 6.26994 6.40663 6.45725 6.57148 6.69668 6.83517 7.00948 7.19546 7.28646 7.37525 7.48226 7.73231 7.95008 7.97366 8.10099 8.98502 9.67433 10.71208 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002962 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.499973 B = 9449.445474 C =10266.311964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.533 3.467 4 O -0.537 6.537 5 N -0.709 5.709 6 C 0.168 3.832 7 C -0.075 4.075 8 C -0.194 4.194 9 C -0.076 4.076 10 C -0.225 4.225 11 C 0.151 3.849 12 O -0.176 6.176 13 C -0.394 4.394 14 H 0.092 0.908 15 C 0.040 3.960 16 N -0.861 5.861 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.168 4.168 22 C -0.117 4.117 23 C 0.099 3.901 24 N -0.729 5.729 25 C 0.529 3.471 26 O -0.511 6.511 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.410 0.590 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -10.740 17.649 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 C 0.317 3.683 4 O -0.414 6.414 5 N -0.360 5.360 6 C 0.045 3.955 7 C -0.075 4.075 8 C -0.214 4.214 9 C -0.094 4.094 10 C -0.245 4.245 11 C 0.097 3.903 12 O -0.079 6.079 13 C -0.470 4.470 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.188 4.188 22 C -0.155 4.155 23 C -0.025 4.025 24 N -0.385 5.385 25 C 0.312 3.688 26 O -0.385 6.385 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.282 -10.449 17.524 21.075 hybrid contribution -0.369 0.007 -1.453 1.499 sum -5.651 -10.441 16.071 19.981 Atomic orbital electron populations 1.21680 0.89505 1.03651 1.03811 1.21636 0.99685 0.94221 0.97135 1.19662 0.80317 0.85891 0.82454 1.90683 1.38440 1.76585 1.35734 1.46160 1.53260 1.12860 1.23726 1.20209 0.99047 0.80296 0.95928 1.19234 0.95520 0.99310 0.93486 1.20458 0.97607 1.04880 0.98455 1.20736 0.98295 0.97744 0.92645 1.21237 0.97242 1.06378 0.99595 1.19308 0.89999 0.92711 0.88261 1.83984 1.39920 1.69034 1.14962 1.21281 1.06972 1.34404 0.84329 0.89077 1.25301 0.95851 0.96942 0.98365 1.70035 1.13796 1.38880 1.26842 0.85775 0.78752 0.79289 0.79586 1.19484 1.20248 1.19449 1.20082 1.02046 1.05139 0.91560 1.22701 0.96642 0.99287 0.96851 1.22137 0.98866 1.01651 0.79889 1.46143 1.37128 1.44148 1.11056 1.20336 0.79833 0.79739 0.88847 1.90827 1.60875 1.65716 1.21062 0.90747 0.91007 0.90754 0.75400 0.90793 0.90631 0.87473 0.87242 0.85438 0.91914 0.86493 0.87177 0.89170 0.89839 0.90441 0.74684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.33 37.16 0.31 -0.82 16 2 C -0.12 -1.27 0.74 -155.67 -0.12 -1.38 16 3 C 0.53 7.18 6.55 -10.99 -0.07 7.11 16 4 O -0.54 -8.28 15.46 5.55 0.09 -8.19 16 5 N -0.71 -10.12 5.40 -61.47 -0.33 -10.45 16 6 C 0.17 2.53 5.80 -5.19 -0.03 2.50 16 7 C -0.07 -1.31 5.25 -104.65 -0.55 -1.86 16 8 C -0.19 -3.25 9.70 -39.53 -0.38 -3.64 16 9 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 10 C -0.22 -4.83 9.17 -39.40 -0.36 -5.19 16 11 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 12 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 13 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 14 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 15 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 16 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 17 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.17 -3.57 9.65 -39.39 -0.38 -3.95 16 22 C -0.12 -0.88 6.05 -25.10 -0.15 -1.03 16 23 C 0.10 0.69 7.78 -3.12 -0.02 0.67 16 24 N -0.73 -6.84 6.24 -59.20 -0.37 -7.21 16 25 C 0.53 6.63 7.08 -10.86 -0.08 6.56 16 26 O -0.51 -8.41 17.69 5.56 0.10 -8.31 16 27 H 0.07 0.73 7.70 -51.93 -0.40 0.33 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.41 6.00 7.80 -40.82 -0.32 5.68 16 31 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.11 0.90 6.91 -51.93 -0.36 0.54 16 39 H 0.09 0.47 7.92 -51.93 -0.41 0.06 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.41 3.28 8.96 -40.82 -0.37 2.92 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -34.03 358.20 -7.04 -41.07 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.36 Total: 10.97 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.30 Total: -9.12 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.06 Total: -42.31 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.18 Total: -21.54 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.03 -7.04 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352216848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.483 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds