Wall clock time and date at job start Tue Mar 31 2020 12:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86798 * 120.00497 * 2 1 4 4 H 1.48504 * 109.46937 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.46921 * 29.99572 * 3 2 1 6 6 H 1.48497 * 109.47304 * 149.99715 * 3 2 1 7 7 C 1.38632 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99877 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00325 * 179.97438 * 7 2 1 10 10 C 1.35782 * 117.00250 * 185.40889 * 9 7 2 11 11 C 1.38905 * 119.99776 * 5.91503 * 10 9 7 12 12 C 1.38004 * 120.00312 * 179.97438 * 11 10 9 13 13 C 1.38925 * 119.99512 * 0.02562 * 12 11 10 14 14 N 1.39991 * 120.00109 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99863 * 146.39922 * 14 13 12 16 16 O 1.21284 * 120.00069 * 354.80038 * 15 14 13 17 17 C 1.50699 * 119.99408 * 174.79910 * 15 14 13 18 18 C 1.53010 * 109.46592 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.60171 * 54.99803 * 18 17 15 20 20 C 1.53348 * 109.60258 * 175.32568 * 18 17 15 21 21 C 1.53067 * 108.42580 * 187.28902 * 20 18 17 22 22 C 1.50182 * 109.88784 * 311.09824 * 21 20 18 23 23 O 1.21283 * 118.24631 * 197.61042 * 22 21 20 24 24 N 1.33356 * 123.50937 * 17.58121 * 22 21 20 25 25 C 1.45815 * 124.16587 * 357.95748 * 24 22 21 26 26 C 1.38915 * 119.99822 * 0.25334 * 13 12 11 27 27 C 1.38010 * 119.99883 * 359.46753 * 26 13 12 28 28 H 0.96997 * 119.99025 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99947 * 359.97438 * 11 10 9 30 30 H 1.08001 * 120.00226 * 180.02562 * 12 11 10 31 31 H 0.97004 * 119.99675 * 326.40834 * 14 13 12 32 32 H 1.09003 * 109.47460 * 60.00653 * 17 15 14 33 33 H 1.08994 * 109.47386 * 299.99544 * 17 15 14 34 34 H 1.09000 * 109.66921 * 307.01922 * 20 18 17 35 35 H 1.09000 * 109.67444 * 67.55094 * 20 18 17 36 36 H 1.08992 * 109.40344 * 71.22573 * 21 20 18 37 37 H 1.08994 * 109.39976 * 191.05859 * 21 20 18 38 38 H 0.96997 * 117.94412 * 177.77726 * 24 22 21 39 39 H 1.09003 * 109.17918 * 258.53302 * 25 24 22 40 40 H 1.09005 * 109.45620 * 139.14147 * 25 24 22 41 41 H 1.08000 * 120.00152 * 179.72666 * 26 13 12 42 42 H 1.07994 * 120.00248 * 180.29321 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1360 0.0014 9 8 3.3570 -1.2007 0.0000 10 6 3.9734 -2.4053 -0.1135 11 6 3.2224 -3.5505 -0.3454 12 6 3.8487 -4.7748 -0.4612 13 6 5.2304 -4.8617 -0.3454 14 7 5.8659 -6.1036 -0.4624 15 6 7.0925 -6.1835 -1.0151 16 8 7.6064 -5.1958 -1.4962 17 6 7.8255 -7.5000 -1.0351 18 6 9.1848 -7.3166 -1.7133 19 1 9.7376 -6.5202 -1.2150 20 6 9.9811 -8.6246 -1.6318 21 6 11.3970 -8.3621 -2.1508 22 6 11.3334 -7.6394 -3.4657 23 8 12.3219 -7.6382 -4.1684 24 7 10.2479 -6.9995 -3.9024 25 6 8.9793 -6.9554 -3.1849 26 6 5.9809 -3.7171 -0.1077 27 6 5.3549 -2.4921 0.0024 28 1 -0.4848 0.8401 -0.0004 29 1 2.1482 -3.4830 -0.4350 30 1 3.2648 -5.6652 -0.6419 31 1 5.4233 -6.9066 -0.1458 32 1 7.2393 -8.2340 -1.5881 33 1 7.9740 -7.8488 -0.0132 34 1 10.0265 -8.9626 -0.5966 35 1 9.5002 -9.3858 -2.2462 36 1 11.9401 -7.7527 -1.4286 37 1 11.9150 -9.3116 -2.2856 38 1 10.3064 -6.5314 -4.7499 39 1 8.2872 -7.6658 -3.6371 40 1 8.5577 -5.9526 -3.2542 41 1 7.0546 -3.7853 -0.0132 42 1 5.9387 -1.6016 0.1825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361587110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:32 Heat of formation + Delta-G solvation = -80.021221 kcal Electronic energy + Delta-G solvation = -25468.186847 eV Core-core repulsion = 21606.538141 eV Total energy + Delta-G solvation = -3861.648706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86204 -40.08683 -38.94745 -37.28721 -36.44500 -34.15439 -33.70932 -32.38734 -31.75820 -30.38315 -28.64385 -26.86860 -25.25452 -24.76521 -22.69116 -22.39933 -21.37033 -20.20232 -19.43630 -18.03512 -17.67203 -17.40983 -17.27130 -16.58268 -16.31959 -15.85629 -15.46071 -14.83172 -14.75043 -14.44879 -14.10280 -13.93722 -13.77107 -13.73270 -13.62363 -13.31145 -12.88112 -12.63077 -12.37913 -12.27721 -11.94528 -11.91816 -11.76496 -11.60743 -11.37492 -11.29364 -10.98149 -10.80496 -10.21576 -10.04721 -9.91416 -9.72015 -9.39847 -9.25924 -8.82274 -8.36948 -7.12674 -6.46487 -4.12276 1.88581 2.03383 2.39108 2.68325 3.03117 3.09463 3.19889 3.24221 3.38514 4.11042 4.20358 4.20856 4.26016 4.36629 4.42206 4.63270 4.84062 4.86833 4.97849 5.01508 5.04543 5.12632 5.19128 5.32339 5.36882 5.40912 5.42045 5.61901 5.68810 5.84322 5.98894 6.04310 6.10968 6.49730 6.58758 6.67536 6.83689 6.99509 7.08124 7.16485 7.50112 7.53905 7.72288 7.95099 7.96852 8.18922 8.88815 9.50856 10.60968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.002222 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.098459 B =12597.903676 C =13146.864999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.215 6.215 10 C 0.152 3.848 11 C -0.206 4.206 12 C -0.092 4.092 13 C 0.043 3.957 14 N -0.661 5.661 15 C 0.503 3.497 16 O -0.525 6.525 17 C -0.133 4.133 18 C -0.089 4.089 19 H 0.092 0.908 20 C -0.120 4.120 21 C -0.134 4.134 22 C 0.517 3.483 23 O -0.566 6.566 24 N -0.716 5.716 25 C 0.106 3.894 26 C -0.069 4.069 27 C -0.177 4.177 28 H 0.280 0.720 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.400 0.600 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.849 -19.039 -0.676 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.100 3.900 11 C -0.226 4.226 12 C -0.112 4.112 13 C -0.050 4.050 14 N -0.305 5.305 15 C 0.290 3.710 16 O -0.401 6.401 17 C -0.173 4.173 18 C -0.108 4.108 19 H 0.110 0.890 20 C -0.158 4.158 21 C -0.174 4.174 22 C 0.304 3.696 23 O -0.445 6.445 24 N -0.367 5.367 25 C -0.018 4.018 26 C -0.089 4.089 27 C -0.197 4.197 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.238 0.762 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.235 0.765 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.143 0.857 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.606 -18.101 -1.127 23.926 hybrid contribution -0.395 0.422 -0.151 0.597 sum 15.211 -17.679 -1.277 23.357 Atomic orbital electron populations 1.69655 1.05566 1.28561 1.47809 1.24477 0.95048 0.98910 0.95604 0.86176 0.80352 0.81349 0.79024 1.19869 1.20753 1.18287 1.20748 0.76888 0.96607 1.52245 0.87647 1.83600 1.22594 1.25622 1.80194 1.19165 0.91594 0.85685 0.93599 1.21108 1.01236 0.91598 1.08618 1.20536 0.92260 0.97493 1.00907 1.17283 0.91439 0.85048 1.11185 1.43303 1.17891 1.08868 1.60482 1.20691 0.81646 0.90987 0.77682 1.90704 1.66642 1.38165 1.44611 1.21682 0.96099 0.95871 1.03663 1.21213 0.95461 0.98579 0.95528 0.89002 1.21756 0.94270 0.97180 1.02568 1.21624 0.98925 1.02179 0.94675 1.20212 0.82384 0.78582 0.88411 1.90761 1.34421 1.62287 1.57043 1.45490 1.12230 1.53639 1.25297 1.21691 0.84567 1.04223 0.91292 1.20573 0.99285 0.90744 0.98291 1.20126 0.91831 0.97739 1.10022 0.91008 0.84483 0.86878 0.76229 0.88390 0.87937 0.90104 0.90883 0.88088 0.88083 0.76503 0.92020 0.88144 0.85685 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 13.96 55.48 0.77 -24.09 16 2 C 0.06 1.74 5.49 -17.51 -0.10 1.64 16 3 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.69 9.90 30.88 0.31 -10.38 16 8 H 0.11 2.93 5.53 -52.48 -0.29 2.64 16 9 O -0.22 -5.55 8.58 0.00 0.00 -5.55 16 10 C 0.15 3.40 6.65 -39.09 -0.26 3.14 16 11 C -0.21 -4.18 9.13 -39.42 -0.36 -4.54 16 12 C -0.09 -1.50 9.96 -39.41 -0.39 -1.90 16 13 C 0.04 0.66 6.27 -83.63 -0.52 0.14 16 14 N -0.66 -7.09 5.34 -9.82 -0.05 -7.15 16 15 C 0.50 5.16 7.32 -10.99 -0.08 5.08 16 16 O -0.52 -7.42 11.74 5.55 0.07 -7.36 16 17 C -0.13 -0.71 5.18 -27.88 -0.14 -0.85 16 18 C -0.09 -0.56 1.89 -90.48 -0.17 -0.73 16 19 H 0.09 0.74 7.94 -51.93 -0.41 0.32 16 20 C -0.12 -0.55 5.33 -26.52 -0.14 -0.69 16 21 C -0.13 -0.88 6.03 -28.10 -0.17 -1.05 16 22 C 0.52 5.35 7.71 -11.87 -0.09 5.26 16 23 O -0.57 -8.29 17.78 5.56 0.10 -8.20 16 24 N -0.72 -6.39 5.45 -61.34 -0.33 -6.72 16 25 C 0.11 0.82 6.12 -4.45 -0.03 0.79 16 26 C -0.07 -1.20 8.65 -39.41 -0.34 -1.54 16 27 C -0.18 -3.49 9.99 -39.42 -0.39 -3.89 16 28 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.14 2.91 5.71 -52.49 -0.30 2.61 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.40 2.86 8.82 -40.82 -0.36 2.50 16 32 H 0.10 0.33 8.11 -51.93 -0.42 -0.09 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 3.46 8.80 -40.82 -0.36 3.10 16 39 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.10 1.00 6.19 -51.93 -0.32 0.68 16 41 H 0.13 2.07 6.45 -52.49 -0.34 1.74 16 42 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -33.96 349.18 -7.25 -41.21 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.32 Total: 5.58 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.89 Total: -9.51 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.39 Total: -37.96 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.96 -7.25 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361587110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.811 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds