Wall clock time and date at job start Tue Mar 31 2020 12:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86798 * 120.00497 * 2 1 4 4 H 1.48504 * 109.46937 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.46921 * 29.99572 * 3 2 1 6 6 H 1.48497 * 109.47304 * 149.99715 * 3 2 1 7 7 C 1.38632 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99877 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00325 * 179.97438 * 7 2 1 10 10 C 1.35782 * 117.00250 * 185.40889 * 9 7 2 11 11 C 1.38905 * 119.99776 * 5.91503 * 10 9 7 12 12 C 1.38004 * 120.00312 * 179.97438 * 11 10 9 13 13 C 1.38925 * 119.99512 * 0.02562 * 12 11 10 14 14 N 1.39991 * 120.00109 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99863 * 146.39922 * 14 13 12 16 16 O 1.21284 * 120.00069 * 354.80038 * 15 14 13 17 17 C 1.50699 * 119.99408 * 174.79910 * 15 14 13 18 18 C 1.53010 * 109.46592 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.60171 * 54.99803 * 18 17 15 20 20 C 1.53348 * 109.60258 * 175.32568 * 18 17 15 21 21 C 1.53067 * 108.42580 * 187.28902 * 20 18 17 22 22 C 1.50182 * 109.88784 * 311.09824 * 21 20 18 23 23 O 1.21283 * 118.24631 * 197.61042 * 22 21 20 24 24 N 1.33356 * 123.50937 * 17.58121 * 22 21 20 25 25 C 1.45815 * 124.16587 * 357.95748 * 24 22 21 26 26 C 1.38915 * 119.99822 * 0.25334 * 13 12 11 27 27 C 1.38010 * 119.99883 * 359.46753 * 26 13 12 28 28 H 0.96997 * 119.99025 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99947 * 359.97438 * 11 10 9 30 30 H 1.08001 * 120.00226 * 180.02562 * 12 11 10 31 31 H 0.97004 * 119.99675 * 326.40834 * 14 13 12 32 32 H 1.09003 * 109.47460 * 60.00653 * 17 15 14 33 33 H 1.08994 * 109.47386 * 299.99544 * 17 15 14 34 34 H 1.09000 * 109.66921 * 307.01922 * 20 18 17 35 35 H 1.09000 * 109.67444 * 67.55094 * 20 18 17 36 36 H 1.08992 * 109.40344 * 71.22573 * 21 20 18 37 37 H 1.08994 * 109.39976 * 191.05859 * 21 20 18 38 38 H 0.96997 * 117.94412 * 177.77726 * 24 22 21 39 39 H 1.09003 * 109.17918 * 258.53302 * 25 24 22 40 40 H 1.09005 * 109.45620 * 139.14147 * 25 24 22 41 41 H 1.08000 * 120.00152 * 179.72666 * 26 13 12 42 42 H 1.07994 * 120.00248 * 180.29321 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1360 0.0014 9 8 3.3570 -1.2007 0.0000 10 6 3.9734 -2.4053 -0.1135 11 6 3.2224 -3.5505 -0.3454 12 6 3.8487 -4.7748 -0.4612 13 6 5.2304 -4.8617 -0.3454 14 7 5.8659 -6.1036 -0.4624 15 6 7.0925 -6.1835 -1.0151 16 8 7.6064 -5.1958 -1.4962 17 6 7.8255 -7.5000 -1.0351 18 6 9.1848 -7.3166 -1.7133 19 1 9.7376 -6.5202 -1.2150 20 6 9.9811 -8.6246 -1.6318 21 6 11.3970 -8.3621 -2.1508 22 6 11.3334 -7.6394 -3.4657 23 8 12.3219 -7.6382 -4.1684 24 7 10.2479 -6.9995 -3.9024 25 6 8.9793 -6.9554 -3.1849 26 6 5.9809 -3.7171 -0.1077 27 6 5.3549 -2.4921 0.0024 28 1 -0.4848 0.8401 -0.0004 29 1 2.1482 -3.4830 -0.4350 30 1 3.2648 -5.6652 -0.6419 31 1 5.4233 -6.9066 -0.1458 32 1 7.2393 -8.2340 -1.5881 33 1 7.9740 -7.8488 -0.0132 34 1 10.0265 -8.9626 -0.5966 35 1 9.5002 -9.3858 -2.2462 36 1 11.9401 -7.7527 -1.4286 37 1 11.9150 -9.3116 -2.2856 38 1 10.3064 -6.5314 -4.7499 39 1 8.2872 -7.6658 -3.6371 40 1 8.5577 -5.9526 -3.2542 41 1 7.0546 -3.7853 -0.0132 42 1 5.9387 -1.6016 0.1825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361587110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:31 Heat of formation + Delta-G solvation = -105.275836 kcal Electronic energy + Delta-G solvation = -25469.281969 eV Core-core repulsion = 21606.538141 eV Total energy + Delta-G solvation = -3862.743828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70351 -41.11713 -40.39398 -38.47246 -37.50440 -35.34584 -34.41005 -34.29428 -32.36565 -31.88668 -29.93179 -27.85357 -26.92415 -25.35119 -23.97831 -23.47611 -22.50518 -21.29074 -19.98776 -19.78607 -19.15053 -18.50532 -18.14735 -17.73745 -17.06956 -16.62736 -16.52305 -16.28210 -15.77351 -15.69470 -15.50742 -15.23268 -14.98477 -14.58536 -14.43520 -14.31326 -14.14886 -14.04092 -13.89958 -13.42749 -13.33392 -13.03673 -12.75430 -12.52499 -12.42387 -12.17358 -11.98313 -11.91362 -11.72297 -11.43941 -11.11774 -10.85441 -10.73319 -10.54838 -10.04438 -9.85117 -8.62708 -8.49205 -6.19653 0.49395 0.52573 1.31905 1.34796 1.51919 1.61872 1.75603 2.20895 2.28483 2.36856 2.77658 3.11062 3.12985 3.58490 3.66896 3.76128 3.86128 4.01798 4.08928 4.13802 4.43103 4.46886 4.48856 4.57315 4.62599 4.70161 4.75169 4.82219 4.87856 4.96913 5.03625 5.11703 5.17242 5.21249 5.39633 5.41789 5.52557 5.58681 5.77145 5.77230 5.92421 6.22251 6.37094 6.63616 6.85844 7.18756 7.33934 7.61189 8.62125 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.002222 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.098459 B =12597.903676 C =13146.864999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.395 4.395 8 H 0.086 0.914 9 O -0.247 6.247 10 C 0.109 3.891 11 C -0.215 4.215 12 C -0.087 4.087 13 C 0.078 3.922 14 N -0.653 5.653 15 C 0.501 3.499 16 O -0.565 6.565 17 C -0.118 4.118 18 C -0.088 4.088 19 H 0.072 0.928 20 C -0.108 4.108 21 C -0.132 4.132 22 C 0.508 3.492 23 O -0.620 6.620 24 N -0.714 5.714 25 C 0.104 3.896 26 C -0.075 4.075 27 C -0.178 4.178 28 H 0.284 0.716 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.427 0.573 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.403 -22.508 0.094 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.471 4.471 8 H 0.104 0.896 9 O -0.155 6.155 10 C 0.060 3.940 11 C -0.235 4.235 12 C -0.107 4.107 13 C -0.016 4.016 14 N -0.300 5.300 15 C 0.291 3.709 16 O -0.443 6.443 17 C -0.158 4.158 18 C -0.107 4.107 19 H 0.091 0.909 20 C -0.145 4.145 21 C -0.172 4.172 22 C 0.297 3.703 23 O -0.503 6.503 24 N -0.362 5.362 25 C -0.019 4.019 26 C -0.095 4.095 27 C -0.198 4.198 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.266 0.734 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.230 0.770 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.160 -21.648 -0.337 27.626 hybrid contribution -0.633 1.172 -0.463 1.410 sum 16.527 -20.476 -0.800 26.325 Atomic orbital electron populations 1.69730 1.06713 1.29478 1.50306 1.25222 0.95864 1.01972 0.95763 0.85279 0.78869 0.77861 0.79110 1.19440 1.19168 1.18853 1.20709 0.78024 0.96171 1.52241 0.89646 1.83539 1.21320 1.27422 1.83197 1.19626 0.92768 0.85528 0.96048 1.21162 1.00500 0.92836 1.08980 1.20837 0.93022 0.97278 0.99599 1.17401 0.91173 0.86694 1.06367 1.43329 1.18229 1.07762 1.60696 1.21702 0.80854 0.92434 0.75926 1.90721 1.67334 1.40256 1.46012 1.21740 0.94747 0.93102 1.06182 1.21208 0.96362 0.99160 0.94000 0.90925 1.21736 0.92149 0.96155 1.04511 1.21687 1.00938 1.02120 0.92411 1.20997 0.81642 0.78283 0.89364 1.90732 1.36266 1.64427 1.58898 1.45609 1.12633 1.52800 1.25191 1.21784 0.83967 1.03401 0.92752 1.20772 0.99953 0.90576 0.98190 1.20322 0.90855 0.99154 1.09480 0.90642 0.86376 0.82827 0.73422 0.84943 0.84423 0.87133 0.89490 0.87486 0.87098 0.76961 0.90016 0.90662 0.84534 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.96 21.61 0.30 -54.01 16 2 C 0.01 0.59 5.49 84.83 0.47 1.05 16 3 Si 0.97 45.50 28.62 68.60 1.96 47.46 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.40 -22.86 9.90 67.91 0.67 -22.19 16 8 H 0.09 5.09 5.53 -2.91 -0.02 5.07 16 9 O -0.25 -13.34 8.58 -22.91 -0.20 -13.54 16 10 C 0.11 5.05 6.65 22.59 0.15 5.20 16 11 C -0.22 -8.84 9.13 22.37 0.20 -8.64 16 12 C -0.09 -2.64 9.96 22.38 0.22 -2.42 16 13 C 0.08 2.16 6.27 38.16 0.24 2.40 16 14 N -0.65 -10.77 5.34 -303.38 -1.62 -12.39 16 15 C 0.50 8.04 7.32 87.66 0.64 8.68 16 16 O -0.56 -14.48 11.74 -3.04 -0.04 -14.52 16 17 C -0.12 -0.54 5.18 29.85 0.15 -0.39 16 18 C -0.09 -0.75 1.89 -10.70 -0.02 -0.77 16 19 H 0.07 0.95 7.94 -2.39 -0.02 0.93 16 20 C -0.11 -0.44 5.33 30.73 0.16 -0.27 16 21 C -0.13 -1.36 6.03 29.71 0.18 -1.18 16 22 C 0.51 10.01 7.71 87.72 0.68 10.69 16 23 O -0.62 -18.38 17.78 -3.04 -0.05 -18.44 16 24 N -0.71 -12.02 5.45 -467.16 -2.55 -14.56 16 25 C 0.10 1.35 6.12 86.48 0.53 1.88 16 26 C -0.07 -2.46 8.65 22.38 0.19 -2.27 16 27 C -0.18 -7.05 9.99 22.38 0.22 -6.82 16 28 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.12 5.29 5.71 -2.91 -0.02 5.27 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.43 3.38 8.82 -92.71 -0.82 2.56 16 32 H 0.13 -0.14 8.11 -2.39 -0.02 -0.15 16 33 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.09 0.19 8.13 -2.39 -0.02 0.17 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.40 6.90 8.80 -92.71 -0.82 6.08 16 39 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 40 H 0.08 1.40 6.19 -2.38 -0.01 1.39 16 41 H 0.14 4.24 6.45 -2.91 -0.02 4.22 16 42 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -80.90 349.18 1.96 -78.94 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.55 Total: 16.12 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.70 Total: -15.06 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -3.86 Total: -80.96 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.29 Total: -46.49 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.96 Total: 47.46 kcal Total: -80.90 1.96 -78.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361587110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.335 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds