Wall clock time and date at job start Tue Mar 31 2020 13:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.21620 * 2 1 4 4 N 1.46503 * 109.46773 * 301.92879 * 3 2 1 5 5 C 1.34780 * 119.99664 * 180.02562 * 4 3 2 6 6 O 1.21590 * 120.00115 * 0.02562 * 5 4 3 7 7 C 1.47532 * 119.99555 * 179.97438 * 5 4 3 8 8 C 1.39661 * 120.19953 * 0.02562 * 7 5 4 9 9 C 1.37832 * 119.91921 * 179.97438 * 8 7 5 10 10 C 1.38569 * 120.32211 * 359.97438 * 9 8 7 11 11 C 1.38022 * 120.40488 * 359.74266 * 10 9 8 12 12 C 1.38842 * 120.06880 * 0.51526 * 11 10 9 13 13 O 1.35519 * 120.16033 * 179.76467 * 12 11 10 14 14 C 1.34816 * 117.00269 * 5.59633 * 13 12 11 15 15 H 1.08008 * 119.99781 * 354.94451 * 14 13 12 16 16 C 1.38692 * 120.00281 * 174.93556 * 14 13 12 17 17 N 1.31517 * 119.99784 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99994 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47145 * 180.02562 * 18 16 14 20 20 H 1.48492 * 109.47409 * 299.99990 * 18 16 14 21 21 H 1.48500 * 109.47320 * 60.00448 * 18 16 14 22 22 C 1.54482 * 110.24589 * 121.92740 * 2 1 3 23 23 C 1.54630 * 101.76726 * 93.67271 * 22 2 1 24 24 C 1.51292 * 104.19269 * 24.79697 * 23 22 2 25 25 O 1.21274 * 124.94033 * 163.75084 * 24 23 22 26 26 N 1.34414 * 110.11573 * 343.74859 * 24 23 22 27 27 H 1.08997 * 109.47423 * 59.29831 * 1 2 3 28 28 H 1.09007 * 109.46805 * 179.30312 * 1 2 3 29 29 H 1.09006 * 109.46947 * 299.29733 * 1 2 3 30 30 H 1.09008 * 109.47153 * 181.93031 * 3 2 1 31 31 H 1.08999 * 109.47090 * 61.93265 * 3 2 1 32 32 H 0.96992 * 120.00015 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.04221 * 359.95931 * 8 7 5 34 34 H 1.07999 * 119.83708 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.79758 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.96939 * 180.25642 * 11 10 9 37 37 H 0.97009 * 119.99670 * 179.97438 * 17 16 14 38 38 H 1.09006 * 110.97259 * 211.79198 * 22 2 1 39 39 H 1.08997 * 110.97317 * 335.51678 * 22 2 1 40 40 H 1.08997 * 110.48893 * 143.47170 * 23 22 2 41 41 H 1.09002 * 110.48575 * 265.98844 * 23 22 2 42 42 H 0.97002 * 124.35014 * 179.56987 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.5419 2.1464 -1.1723 5 6 1.8780 3.4347 -1.3816 6 8 2.6104 4.0070 -0.5978 7 6 1.3580 4.1501 -2.5624 8 6 0.5169 3.4966 -3.4657 9 6 0.0340 4.1707 -4.5667 10 6 0.3785 5.4954 -4.7825 11 6 1.2041 6.1559 -3.8954 12 6 1.7043 5.4913 -2.7837 13 8 2.5189 6.1366 -1.9140 14 6 2.7131 7.4547 -2.1202 15 1 2.2954 7.9318 -2.9945 16 6 3.4490 8.1981 -1.2095 17 7 3.9579 7.6170 -0.1450 18 14 3.7174 10.0245 -1.4948 19 1 4.5308 10.5846 -0.3857 20 1 4.4312 10.2250 -2.7815 21 1 2.4042 10.7161 -1.5443 22 6 2.0645 -0.7665 1.2301 23 6 2.2646 -2.1874 0.6538 24 6 2.4538 -1.9625 -0.8303 25 8 2.9124 -2.7767 -1.6033 26 7 2.0396 -0.7290 -1.1674 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3633 -1.0277 -0.0125 29 1 -0.3633 0.5029 0.8963 30 1 3.1481 1.4218 -0.0346 31 1 1.7305 1.9438 0.9068 32 1 0.9585 1.6895 -1.7981 33 1 0.2453 2.4642 -3.3019 34 1 -0.6161 3.6639 -5.2646 35 1 -0.0044 6.0153 -5.6482 36 1 1.4648 7.1897 -4.0683 37 1 4.4730 8.1369 0.4918 38 1 3.0112 -0.3466 1.5703 39 1 1.3305 -0.7716 2.0359 40 1 3.1509 -2.6527 1.0851 41 1 1.3836 -2.8018 0.8393 42 1 2.0735 -0.3670 -2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361713976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:04 Heat of formation + Delta-G solvation = -68.791544 kcal Electronic energy + Delta-G solvation = -26436.829570 eV Core-core repulsion = 22575.667819 eV Total energy + Delta-G solvation = -3861.161751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93269 -39.58080 -38.23145 -37.15899 -36.37683 -34.02311 -32.37866 -31.63943 -31.14995 -30.05148 -28.96811 -27.03240 -25.43072 -24.49759 -22.79921 -21.44034 -21.14087 -20.46625 -19.83241 -18.16053 -17.90701 -16.92862 -16.39638 -16.14584 -15.68541 -15.15737 -14.71666 -14.60602 -14.35972 -14.29421 -14.12162 -13.87114 -13.77905 -13.44356 -13.10335 -13.01251 -12.80575 -12.66784 -12.53151 -12.23075 -12.01169 -11.74808 -11.35315 -11.29167 -11.20037 -11.15534 -10.91895 -10.83914 -10.50688 -10.05739 -9.62764 -9.37902 -8.93772 -8.90791 -8.69170 -8.32455 -7.35632 -6.48071 -4.08128 1.66134 2.27324 2.41434 3.06860 3.09621 3.11438 3.14000 3.51605 3.68600 3.90647 4.06123 4.11286 4.41385 4.58660 4.62737 4.72524 5.00074 5.02765 5.12768 5.25282 5.33761 5.40140 5.45029 5.47467 5.50233 5.61888 5.67374 5.72399 5.79464 5.91013 6.04612 6.06968 6.50971 6.58710 6.63631 6.77991 6.84560 6.86741 7.01192 7.19187 7.24895 7.64638 7.86841 7.99615 8.05937 8.91296 9.00606 9.63010 10.65541 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003283 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.158861 B = 8525.778810 C = 9675.214396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C 0.124 3.876 4 N -0.746 5.746 5 C 0.555 3.445 6 O -0.498 6.498 7 C -0.229 4.229 8 C -0.039 4.039 9 C -0.230 4.230 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.123 6.123 14 C -0.405 4.405 15 H 0.094 0.906 16 C 0.046 3.954 17 N -0.832 5.832 18 Si 0.941 3.059 19 H -0.276 1.276 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.121 4.121 23 C -0.155 4.155 24 C 0.521 3.479 25 O -0.539 6.539 26 N -0.720 5.720 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.390 0.610 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -13.425 0.922 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.057 3.943 3 C -0.001 4.001 4 N -0.403 5.403 5 C 0.345 3.655 6 O -0.372 6.372 7 C -0.234 4.234 8 C -0.057 4.057 9 C -0.249 4.249 10 C -0.069 4.069 11 C -0.256 4.256 12 C 0.129 3.871 13 O -0.021 6.021 14 C -0.480 4.480 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.463 5.463 18 Si 0.765 3.235 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.160 4.160 23 C -0.195 4.195 24 C 0.307 3.693 25 O -0.416 6.416 26 N -0.376 5.376 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.225 0.775 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.124 -13.447 1.693 15.311 hybrid contribution -0.278 0.948 -1.014 1.415 sum -7.402 -12.499 0.679 14.542 Atomic orbital electron populations 1.22189 0.93166 1.02626 1.03551 1.21357 0.94757 0.91976 0.86190 1.21537 0.99440 0.88832 0.90313 1.45905 1.53967 1.12950 1.27480 1.18229 0.80912 0.80558 0.85817 1.90959 1.34612 1.65889 1.45708 1.18809 1.10396 0.93954 1.00201 1.20720 0.94264 0.97527 0.93238 1.20460 1.07980 0.95786 1.00725 1.20901 0.94796 0.94166 0.97021 1.21170 1.05312 1.01773 0.97378 1.19265 0.87945 0.90670 0.89175 1.84165 1.51377 1.22577 1.43983 1.21458 1.35540 0.81392 1.09659 0.88904 1.25379 0.95824 1.00368 0.94673 1.70116 1.29832 1.36636 1.09749 0.85796 0.78926 0.80310 0.78488 1.20124 1.19356 1.19343 1.22671 1.03341 0.93596 0.96345 1.22349 1.05161 0.98630 0.93372 1.20877 0.76009 0.81414 0.91008 1.90760 1.45441 1.47716 1.57637 1.46415 1.63983 1.15727 1.11438 0.91731 0.91825 0.90485 0.90933 0.90093 0.77488 0.87305 0.87270 0.87153 0.85054 0.91778 0.89157 0.88554 0.87912 0.87780 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.61 37.15 0.32 -0.79 16 2 C 0.14 1.22 0.84 -130.90 -0.11 1.11 16 3 C 0.12 1.51 4.76 -4.04 -0.02 1.49 16 4 N -0.75 -10.68 5.08 -61.34 -0.31 -10.99 16 5 C 0.56 11.51 7.76 -12.47 -0.10 11.41 16 6 O -0.50 -13.07 15.17 -16.57 -0.25 -13.32 16 7 C -0.23 -4.78 5.89 -104.81 -0.62 -5.39 16 8 C -0.04 -0.63 9.53 -39.20 -0.37 -1.01 16 9 C -0.23 -3.65 10.03 -39.61 -0.40 -4.05 16 10 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 11 C -0.24 -4.99 9.16 -39.44 -0.36 -5.35 16 12 C 0.19 4.59 6.66 -38.60 -0.26 4.33 16 13 O -0.12 -3.57 7.84 -21.06 -0.17 -3.73 16 14 C -0.40 -11.29 9.49 30.90 0.29 -10.99 16 15 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16 16 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 17 N -0.83 -24.70 13.67 55.48 0.76 -23.94 16 18 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.12 -0.80 6.21 -25.10 -0.16 -0.95 16 23 C -0.15 -1.13 6.86 -26.74 -0.18 -1.31 16 24 C 0.52 5.89 8.43 -10.86 -0.09 5.80 16 25 O -0.54 -8.47 18.03 5.56 0.10 -8.37 16 26 N -0.72 -7.08 5.43 -46.61 -0.25 -7.33 16 27 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.39 4.45 5.06 -40.82 -0.21 4.25 16 33 H 0.11 1.34 6.40 -52.49 -0.34 1.00 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 39 H 0.10 0.44 7.89 -51.93 -0.41 0.03 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.41 4.09 8.72 -40.82 -0.36 3.73 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -36.54 352.72 -7.53 -44.07 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.16 Total: 8.91 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.54 Total: -5.81 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.19 Total: -42.27 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.32 Total: -25.42 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.54 -7.53 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361713976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds