Wall clock time and date at job start Tue Mar 31 2020 13:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.21620 * 2 1 4 4 N 1.46503 * 109.46773 * 301.92879 * 3 2 1 5 5 C 1.34780 * 119.99664 * 180.02562 * 4 3 2 6 6 O 1.21590 * 120.00115 * 0.02562 * 5 4 3 7 7 C 1.47532 * 119.99555 * 179.97438 * 5 4 3 8 8 C 1.39661 * 120.19953 * 0.02562 * 7 5 4 9 9 C 1.37832 * 119.91921 * 179.97438 * 8 7 5 10 10 C 1.38569 * 120.32211 * 359.97438 * 9 8 7 11 11 C 1.38022 * 120.40488 * 359.74266 * 10 9 8 12 12 C 1.38842 * 120.06880 * 0.51526 * 11 10 9 13 13 O 1.35519 * 120.16033 * 179.76467 * 12 11 10 14 14 C 1.34816 * 117.00269 * 5.59633 * 13 12 11 15 15 H 1.08008 * 119.99781 * 354.94451 * 14 13 12 16 16 C 1.38692 * 120.00281 * 174.93556 * 14 13 12 17 17 N 1.31517 * 119.99784 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99994 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47145 * 180.02562 * 18 16 14 20 20 H 1.48492 * 109.47409 * 299.99990 * 18 16 14 21 21 H 1.48500 * 109.47320 * 60.00448 * 18 16 14 22 22 C 1.54482 * 110.24589 * 121.92740 * 2 1 3 23 23 C 1.54630 * 101.76726 * 93.67271 * 22 2 1 24 24 C 1.51292 * 104.19269 * 24.79697 * 23 22 2 25 25 O 1.21274 * 124.94033 * 163.75084 * 24 23 22 26 26 N 1.34414 * 110.11573 * 343.74859 * 24 23 22 27 27 H 1.08997 * 109.47423 * 59.29831 * 1 2 3 28 28 H 1.09007 * 109.46805 * 179.30312 * 1 2 3 29 29 H 1.09006 * 109.46947 * 299.29733 * 1 2 3 30 30 H 1.09008 * 109.47153 * 181.93031 * 3 2 1 31 31 H 1.08999 * 109.47090 * 61.93265 * 3 2 1 32 32 H 0.96992 * 120.00015 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.04221 * 359.95931 * 8 7 5 34 34 H 1.07999 * 119.83708 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.79758 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.96939 * 180.25642 * 11 10 9 37 37 H 0.97009 * 119.99670 * 179.97438 * 17 16 14 38 38 H 1.09006 * 110.97259 * 211.79198 * 22 2 1 39 39 H 1.08997 * 110.97317 * 335.51678 * 22 2 1 40 40 H 1.08997 * 110.48893 * 143.47170 * 23 22 2 41 41 H 1.09002 * 110.48575 * 265.98844 * 23 22 2 42 42 H 0.97002 * 124.35014 * 179.56987 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.5419 2.1464 -1.1723 5 6 1.8780 3.4347 -1.3816 6 8 2.6104 4.0070 -0.5978 7 6 1.3580 4.1501 -2.5624 8 6 0.5169 3.4966 -3.4657 9 6 0.0340 4.1707 -4.5667 10 6 0.3785 5.4954 -4.7825 11 6 1.2041 6.1559 -3.8954 12 6 1.7043 5.4913 -2.7837 13 8 2.5189 6.1366 -1.9140 14 6 2.7131 7.4547 -2.1202 15 1 2.2954 7.9318 -2.9945 16 6 3.4490 8.1981 -1.2095 17 7 3.9579 7.6170 -0.1450 18 14 3.7174 10.0245 -1.4948 19 1 4.5308 10.5846 -0.3857 20 1 4.4312 10.2250 -2.7815 21 1 2.4042 10.7161 -1.5443 22 6 2.0645 -0.7665 1.2301 23 6 2.2646 -2.1874 0.6538 24 6 2.4538 -1.9625 -0.8303 25 8 2.9124 -2.7767 -1.6033 26 7 2.0396 -0.7290 -1.1674 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3633 -1.0277 -0.0125 29 1 -0.3633 0.5029 0.8963 30 1 3.1481 1.4218 -0.0346 31 1 1.7305 1.9438 0.9068 32 1 0.9585 1.6895 -1.7981 33 1 0.2453 2.4642 -3.3019 34 1 -0.6161 3.6639 -5.2646 35 1 -0.0044 6.0153 -5.6482 36 1 1.4648 7.1897 -4.0683 37 1 4.4730 8.1369 0.4918 38 1 3.0112 -0.3466 1.5703 39 1 1.3305 -0.7716 2.0359 40 1 3.1509 -2.6527 1.0851 41 1 1.3836 -2.8018 0.8393 42 1 2.0735 -0.3670 -2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361713976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:03 Heat of formation + Delta-G solvation = -96.922051 kcal Electronic energy + Delta-G solvation = -26438.049400 eV Core-core repulsion = 22575.667819 eV Total energy + Delta-G solvation = -3862.381581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83211 -41.14478 -39.79033 -38.27569 -38.01273 -35.39155 -34.32097 -32.53535 -32.28930 -31.10246 -30.57137 -28.00018 -27.30155 -25.47096 -24.17789 -23.01318 -22.04515 -21.42455 -21.10115 -19.85927 -19.43897 -18.18462 -17.63485 -17.16834 -16.98969 -16.39689 -16.29386 -15.94872 -15.92320 -15.64498 -15.35776 -15.32565 -14.98220 -14.62007 -14.38620 -14.24938 -13.87273 -13.66295 -13.54878 -13.36989 -13.23128 -12.96723 -12.78663 -12.69923 -12.50727 -12.37359 -12.15641 -11.98766 -11.81466 -11.44238 -10.97188 -10.82297 -10.63836 -10.24145 -10.14365 -9.79752 -9.04245 -8.44534 -6.15487 0.11447 0.72057 1.32738 1.45190 1.50148 1.55009 2.07694 2.14288 2.16538 2.37521 2.87699 3.22193 3.32997 3.37556 3.46162 3.73702 3.90170 3.96217 4.06686 4.10406 4.27946 4.38926 4.50507 4.55965 4.62195 4.72521 4.77502 4.85712 4.94041 4.96681 5.07009 5.08996 5.11798 5.13310 5.32047 5.46182 5.47192 5.60245 5.69126 5.79572 5.95759 5.99911 6.15814 6.62322 6.94831 7.19454 7.45785 7.79714 8.75512 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003283 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.158861 B = 8525.778810 C = 9675.214396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 C 0.121 3.879 4 N -0.717 5.717 5 C 0.550 3.450 6 O -0.565 6.565 7 C -0.245 4.245 8 C -0.030 4.030 9 C -0.201 4.201 10 C -0.041 4.041 11 C -0.258 4.258 12 C 0.150 3.850 13 O -0.187 6.187 14 C -0.430 4.430 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.903 5.903 18 Si 1.020 2.980 19 H -0.273 1.273 20 H -0.256 1.256 21 H -0.254 1.254 22 C -0.116 4.116 23 C -0.145 4.145 24 C 0.512 3.488 25 O -0.590 6.590 26 N -0.718 5.718 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.271 0.729 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 -15.312 -0.924 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.067 3.933 3 C -0.004 4.004 4 N -0.373 5.373 5 C 0.340 3.660 6 O -0.444 6.444 7 C -0.250 4.250 8 C -0.048 4.048 9 C -0.220 4.220 10 C -0.059 4.059 11 C -0.278 4.278 12 C 0.094 3.906 13 O -0.090 6.090 14 C -0.505 4.505 15 H 0.123 0.877 16 C -0.219 4.219 17 N -0.539 5.539 18 Si 0.839 3.161 19 H -0.197 1.197 20 H -0.180 1.180 21 H -0.178 1.178 22 C -0.155 4.155 23 C -0.184 4.184 24 C 0.300 3.700 25 O -0.471 6.471 26 N -0.372 5.372 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.597 -15.398 -0.211 18.693 hybrid contribution 0.500 1.198 -0.707 1.478 sum -10.097 -14.200 -0.918 17.448 Atomic orbital electron populations 1.22206 0.91141 1.03968 1.04018 1.21390 0.96008 0.89161 0.86704 1.21686 0.98348 0.91131 0.89188 1.45607 1.52725 1.10885 1.28082 1.18471 0.80161 0.82104 0.85293 1.90943 1.37700 1.67841 1.47892 1.19295 1.11106 0.93281 1.01339 1.21265 0.92014 0.99590 0.91961 1.21169 1.05776 0.94918 1.00106 1.21425 0.92571 0.94997 0.96877 1.21312 1.06830 1.01892 0.97730 1.20081 0.88412 0.92268 0.89809 1.84169 1.55009 1.23069 1.46733 1.21987 1.36095 0.82062 1.10404 0.87699 1.26714 0.95291 1.05811 0.94107 1.70307 1.32899 1.38829 1.11841 0.84648 0.79393 0.73362 0.78737 1.19748 1.17974 1.17809 1.22763 1.04053 0.92542 0.96097 1.22388 1.06723 0.99306 0.90018 1.21580 0.74873 0.81028 0.92499 1.90731 1.47753 1.49270 1.59351 1.46523 1.63356 1.15575 1.11721 0.91927 0.90014 0.89446 0.93165 0.90382 0.75359 0.82412 0.81962 0.82988 0.85973 0.92008 0.89657 0.85437 0.87144 0.85167 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.61 71.98 0.62 -1.00 16 2 C 0.15 2.27 0.84 4.06 0.00 2.27 16 3 C 0.12 2.93 4.76 86.38 0.41 3.34 16 4 N -0.72 -20.02 5.08 -466.25 -2.37 -22.38 16 5 C 0.55 23.56 7.76 86.69 0.67 24.24 16 6 O -0.57 -32.01 15.17 16.90 0.26 -31.75 16 7 C -0.25 -10.26 5.89 -19.99 -0.12 -10.38 16 8 C -0.03 -0.86 9.53 22.52 0.21 -0.64 16 9 C -0.20 -5.19 10.03 22.25 0.22 -4.97 16 10 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 11 C -0.26 -10.87 9.16 22.36 0.20 -10.67 16 12 C 0.15 7.56 6.66 22.91 0.15 7.71 16 13 O -0.19 -11.75 7.84 0.83 0.01 -11.75 16 14 C -0.43 -25.74 9.49 67.93 0.64 -25.10 16 15 H 0.11 5.64 5.21 -2.91 -0.02 5.62 16 16 C -0.02 -1.16 5.49 84.85 0.47 -0.69 16 17 N -0.90 -58.27 13.67 21.62 0.30 -57.98 16 18 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 22 C -0.12 -1.21 6.21 31.65 0.20 -1.01 16 23 C -0.14 -1.70 6.86 30.59 0.21 -1.49 16 24 C 0.51 10.85 8.43 87.90 0.74 11.59 16 25 O -0.59 -18.37 18.03 -3.01 -0.05 -18.42 16 26 N -0.72 -12.91 5.43 -419.97 -2.28 -15.19 16 27 H 0.06 0.68 6.79 -2.39 -0.02 0.67 16 28 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.41 8.18 5.06 -92.71 -0.47 7.71 16 33 H 0.16 2.92 6.40 -2.91 -0.02 2.90 16 34 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 37 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 38 H 0.08 1.02 7.91 -2.38 -0.02 1.00 16 39 H 0.13 0.61 7.89 -2.39 -0.02 0.60 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.41 7.49 8.72 -92.71 -0.81 6.68 16 Total: -1.00 -92.98 352.72 2.55 -90.42 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.19 Total: 29.12 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 4.87 Total: -7.80 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -4.35 Total: -95.56 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: 0.21 Total: -61.92 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -92.98 2.55 -90.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361713976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal (2) G-P(sol) polarization free energy of solvation -92.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds