Wall clock time and date at job start Tue Mar 31 2020 13:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.21853 * 2 1 4 4 N 1.46502 * 109.46992 * 64.29884 * 3 2 1 5 5 C 1.34776 * 119.99874 * 180.02562 * 4 3 2 6 6 O 1.21591 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.47531 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.39662 * 120.19549 * 359.71960 * 7 5 4 9 9 C 1.37840 * 119.91664 * 179.76783 * 8 7 5 10 10 C 1.38565 * 120.32403 * 0.53251 * 9 8 7 11 11 C 1.38026 * 120.40029 * 359.70352 * 10 9 8 12 12 C 1.38834 * 120.07674 * 0.03352 * 11 10 9 13 13 O 1.35517 * 120.16322 * 179.97438 * 12 11 10 14 14 C 1.34810 * 116.99906 * 354.40893 * 13 12 11 15 15 H 1.07998 * 120.00692 * 5.05895 * 14 13 12 16 16 C 1.38707 * 119.99667 * 185.06101 * 14 13 12 17 17 N 1.31522 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47090 * 59.99832 * 18 16 14 20 20 H 1.48496 * 109.47174 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46905 * 299.99934 * 18 16 14 22 22 C 1.54481 * 110.24239 * 238.07060 * 2 1 3 23 23 C 1.54625 * 101.76387 * 215.58214 * 22 2 1 24 24 C 1.51282 * 104.19759 * 24.79876 * 23 22 2 25 25 O 1.21286 * 124.94514 * 163.70846 * 24 23 22 26 26 N 1.34422 * 110.11252 * 343.74866 * 24 23 22 27 27 H 1.08998 * 109.47109 * 181.93278 * 1 2 3 28 28 H 1.08993 * 109.47221 * 61.92653 * 1 2 3 29 29 H 1.09002 * 109.46853 * 301.92984 * 1 2 3 30 30 H 1.08998 * 109.47126 * 184.30097 * 3 2 1 31 31 H 1.09008 * 109.46973 * 304.30154 * 3 2 1 32 32 H 0.96996 * 120.00183 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.04360 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.83371 * 180.27872 * 9 8 7 35 35 H 1.07997 * 119.79946 * 179.71996 * 10 9 8 36 36 H 1.08009 * 119.96347 * 180.02562 * 11 10 9 37 37 H 0.96997 * 119.99545 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.96915 * 333.70367 * 22 2 1 39 39 H 1.09003 * 110.96988 * 97.42990 * 22 2 1 40 40 H 1.09000 * 110.48972 * 143.47380 * 23 22 2 41 41 H 1.09002 * 110.49154 * 266.12046 * 23 22 2 42 42 H 0.97000 * 124.34562 * 179.59504 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 7 1.6654 2.1009 1.2446 5 6 2.0227 3.3814 1.4663 6 8 2.6711 3.9847 0.6331 7 6 1.6271 4.0512 2.7199 8 6 0.8774 3.3641 3.6771 9 6 0.5150 3.9939 4.8484 10 6 0.8814 5.3105 5.0771 11 6 1.6182 6.0036 4.1381 12 6 1.9968 5.3838 2.9549 13 8 2.7197 6.0629 2.0315 14 6 2.9408 7.3714 2.2687 15 1 2.6188 7.8134 3.2000 16 6 3.5818 8.1502 1.3165 17 7 3.9743 7.6118 0.1825 18 14 3.8874 9.9635 1.6448 19 1 4.7321 10.1115 2.8571 20 1 4.5827 10.5671 0.4797 21 1 2.5898 10.6535 1.8582 22 6 2.0645 -0.7665 -1.2301 23 6 3.3287 -1.4453 -0.6538 24 6 3.0523 -1.5451 0.8302 25 8 3.6575 -2.2574 1.6032 26 7 2.0379 -0.7301 1.1674 27 1 -0.3633 -1.0271 0.0347 28 1 -0.3633 0.4836 -0.9067 29 1 -0.3633 0.5435 0.8722 30 1 3.1459 1.4225 -0.0771 31 1 1.6408 1.9768 -0.8490 32 1 1.1472 1.6201 1.9087 33 1 0.5855 2.3392 3.5016 34 1 -0.0610 3.4598 5.5897 35 1 0.5891 5.7971 5.9959 36 1 1.9004 7.0295 4.3239 37 1 4.4222 8.1565 -0.4834 38 1 1.3433 -1.5098 -1.5702 39 1 2.3230 -0.0794 -2.0359 40 1 3.4591 -2.4378 -1.0851 41 1 4.2094 -0.8298 -0.8372 42 1 1.6867 -0.6366 2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361713986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:09 Heat of formation + Delta-G solvation = -68.962447 kcal Electronic energy + Delta-G solvation = -26555.771793 eV Core-core repulsion = 22694.602631 eV Total energy + Delta-G solvation = -3861.169162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92213 -39.54907 -38.18570 -37.13320 -36.36282 -33.89824 -32.36721 -31.62223 -31.22095 -30.24664 -28.95777 -26.72758 -25.38765 -24.53135 -22.85604 -21.44531 -21.12801 -20.45138 -19.82236 -18.13974 -17.85696 -17.00592 -16.48669 -16.07536 -15.46730 -15.16242 -14.67770 -14.53784 -14.34245 -14.26048 -14.06894 -13.84625 -13.68746 -13.51508 -13.43074 -12.91041 -12.76675 -12.65403 -12.51979 -12.19726 -11.88681 -11.73827 -11.35401 -11.30707 -11.19017 -11.15866 -10.90918 -10.83275 -10.49945 -10.01983 -9.61459 -9.36156 -8.91547 -8.89559 -8.65050 -8.30943 -7.34356 -6.47087 -4.07054 1.67647 2.28492 2.46038 3.06866 3.10242 3.12128 3.14636 3.54054 3.70569 3.91524 4.11466 4.18547 4.36149 4.60104 4.62715 4.75939 5.03048 5.04415 5.13696 5.27535 5.35454 5.42203 5.46057 5.49068 5.54442 5.63172 5.68656 5.72784 5.79364 5.88367 6.05176 6.08100 6.52132 6.59692 6.65073 6.79727 6.86888 6.89261 7.02291 7.20400 7.25970 7.65837 7.88362 8.02467 8.08798 8.92339 9.03175 9.64300 10.66600 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.003465 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.761020 B = 8078.635879 C = 9177.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 C 0.121 3.879 4 N -0.742 5.742 5 C 0.555 3.445 6 O -0.499 6.499 7 C -0.228 4.228 8 C -0.038 4.038 9 C -0.231 4.231 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.189 3.811 13 O -0.123 6.123 14 C -0.405 4.405 15 H 0.094 0.906 16 C 0.046 3.954 17 N -0.833 5.833 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.268 1.268 22 C -0.119 4.119 23 C -0.158 4.158 24 C 0.522 3.478 25 O -0.538 6.538 26 N -0.720 5.720 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.389 0.611 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.272 0.728 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -13.714 -0.830 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 C -0.005 4.005 4 N -0.398 5.398 5 C 0.345 3.655 6 O -0.373 6.373 7 C -0.233 4.233 8 C -0.057 4.057 9 C -0.250 4.250 10 C -0.069 4.069 11 C -0.257 4.257 12 C 0.129 3.871 13 O -0.021 6.021 14 C -0.481 4.481 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.464 5.464 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.158 4.158 23 C -0.198 4.198 24 C 0.309 3.691 25 O -0.414 6.414 26 N -0.376 5.376 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.105 -13.610 -1.669 15.443 hybrid contribution -0.353 0.821 1.075 1.399 sum -7.458 -12.788 -0.594 14.816 Atomic orbital electron populations 1.22102 0.92635 1.02764 1.03764 1.21352 0.95184 0.91533 0.86217 1.21610 1.00481 0.89899 0.88465 1.45786 1.59531 1.13692 1.20800 1.18223 0.79804 0.80544 0.86965 1.90955 1.37138 1.63678 1.45521 1.18820 1.12482 0.94331 0.97670 1.20715 0.94703 0.97399 0.92914 1.20459 1.09316 0.96173 0.99020 1.20897 0.94700 0.93992 0.97307 1.21167 1.06941 1.01965 0.95579 1.19267 0.88419 0.90514 0.88862 1.84166 1.56154 1.22356 1.39420 1.21459 1.40206 0.82065 1.04323 0.88911 1.25383 0.96009 1.00281 0.94574 1.70116 1.33775 1.36581 1.05890 0.85795 0.79037 0.80283 0.78401 1.19351 1.20128 1.19352 1.22653 0.96803 0.99788 0.96531 1.22392 1.00153 1.03999 0.93299 1.20871 0.78823 0.78378 0.91063 1.90762 1.51870 1.41179 1.57632 1.46352 1.36438 1.43569 1.11205 0.91578 0.90334 0.91675 0.91312 0.90309 0.77681 0.87340 0.87277 0.87157 0.85058 0.91789 0.89307 0.88448 0.87952 0.87446 0.75309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.69 37.16 0.32 -0.72 16 2 C 0.14 1.21 0.83 -130.90 -0.11 1.10 16 3 C 0.12 1.50 4.71 -4.04 -0.02 1.48 16 4 N -0.74 -10.92 5.10 -61.35 -0.31 -11.24 16 5 C 0.56 11.73 7.76 -12.47 -0.10 11.63 16 6 O -0.50 -13.26 15.17 -16.57 -0.25 -13.51 16 7 C -0.23 -4.84 5.89 -104.81 -0.62 -5.46 16 8 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 9 C -0.23 -3.70 10.03 -39.61 -0.40 -4.10 16 10 C -0.05 -0.88 10.03 -39.54 -0.40 -1.27 16 11 C -0.24 -5.04 9.16 -39.44 -0.36 -5.40 16 12 C 0.19 4.64 6.66 -38.60 -0.26 4.38 16 13 O -0.12 -3.59 7.84 -21.03 -0.16 -3.76 16 14 C -0.40 -11.36 9.49 30.91 0.29 -11.07 16 15 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 16 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 17 N -0.83 -24.82 13.67 55.48 0.76 -24.07 16 18 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.12 -0.78 6.21 -25.10 -0.16 -0.94 16 23 C -0.16 -1.31 6.86 -26.74 -0.18 -1.49 16 24 C 0.52 6.22 8.43 -10.86 -0.09 6.13 16 25 O -0.54 -8.77 18.03 5.55 0.10 -8.67 16 26 N -0.72 -6.99 5.18 -46.61 -0.24 -7.23 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.46 7.15 -51.93 -0.37 0.09 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.39 4.56 5.27 -40.82 -0.22 4.35 16 33 H 0.11 1.36 6.40 -52.49 -0.34 1.02 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 0.44 7.91 -51.93 -0.41 0.02 16 39 H 0.10 0.56 7.89 -51.93 -0.41 0.15 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.41 3.67 8.75 -40.82 -0.36 3.31 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -37.11 353.14 -7.54 -44.65 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.19 Total: 8.78 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.54 Total: -5.58 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.20 Total: -42.53 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.32 Total: -25.94 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.11 -7.54 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361713986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds