Wall clock time and date at job start Tue Mar 31 2020 13:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.21853 * 2 1 4 4 N 1.46502 * 109.46992 * 64.29884 * 3 2 1 5 5 C 1.34776 * 119.99874 * 180.02562 * 4 3 2 6 6 O 1.21591 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.47531 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.39662 * 120.19549 * 359.71960 * 7 5 4 9 9 C 1.37840 * 119.91664 * 179.76783 * 8 7 5 10 10 C 1.38565 * 120.32403 * 0.53251 * 9 8 7 11 11 C 1.38026 * 120.40029 * 359.70352 * 10 9 8 12 12 C 1.38834 * 120.07674 * 0.03352 * 11 10 9 13 13 O 1.35517 * 120.16322 * 179.97438 * 12 11 10 14 14 C 1.34810 * 116.99906 * 354.40893 * 13 12 11 15 15 H 1.07998 * 120.00692 * 5.05895 * 14 13 12 16 16 C 1.38707 * 119.99667 * 185.06101 * 14 13 12 17 17 N 1.31522 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47090 * 59.99832 * 18 16 14 20 20 H 1.48496 * 109.47174 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46905 * 299.99934 * 18 16 14 22 22 C 1.54481 * 110.24239 * 238.07060 * 2 1 3 23 23 C 1.54625 * 101.76387 * 215.58214 * 22 2 1 24 24 C 1.51282 * 104.19759 * 24.79876 * 23 22 2 25 25 O 1.21286 * 124.94514 * 163.70846 * 24 23 22 26 26 N 1.34422 * 110.11252 * 343.74866 * 24 23 22 27 27 H 1.08998 * 109.47109 * 181.93278 * 1 2 3 28 28 H 1.08993 * 109.47221 * 61.92653 * 1 2 3 29 29 H 1.09002 * 109.46853 * 301.92984 * 1 2 3 30 30 H 1.08998 * 109.47126 * 184.30097 * 3 2 1 31 31 H 1.09008 * 109.46973 * 304.30154 * 3 2 1 32 32 H 0.96996 * 120.00183 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.04360 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.83371 * 180.27872 * 9 8 7 35 35 H 1.07997 * 119.79946 * 179.71996 * 10 9 8 36 36 H 1.08009 * 119.96347 * 180.02562 * 11 10 9 37 37 H 0.96997 * 119.99545 * 179.97438 * 17 16 14 38 38 H 1.09001 * 110.96915 * 333.70367 * 22 2 1 39 39 H 1.09003 * 110.96988 * 97.42990 * 22 2 1 40 40 H 1.09000 * 110.48972 * 143.47380 * 23 22 2 41 41 H 1.09002 * 110.49154 * 266.12046 * 23 22 2 42 42 H 0.97000 * 124.34562 * 179.59504 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 7 1.6654 2.1009 1.2446 5 6 2.0227 3.3814 1.4663 6 8 2.6711 3.9847 0.6331 7 6 1.6271 4.0512 2.7199 8 6 0.8774 3.3641 3.6771 9 6 0.5150 3.9939 4.8484 10 6 0.8814 5.3105 5.0771 11 6 1.6182 6.0036 4.1381 12 6 1.9968 5.3838 2.9549 13 8 2.7197 6.0629 2.0315 14 6 2.9408 7.3714 2.2687 15 1 2.6188 7.8134 3.2000 16 6 3.5818 8.1502 1.3165 17 7 3.9743 7.6118 0.1825 18 14 3.8874 9.9635 1.6448 19 1 4.7321 10.1115 2.8571 20 1 4.5827 10.5671 0.4797 21 1 2.5898 10.6535 1.8582 22 6 2.0645 -0.7665 -1.2301 23 6 3.3287 -1.4453 -0.6538 24 6 3.0523 -1.5451 0.8302 25 8 3.6575 -2.2574 1.6032 26 7 2.0379 -0.7301 1.1674 27 1 -0.3633 -1.0271 0.0347 28 1 -0.3633 0.4836 -0.9067 29 1 -0.3633 0.5435 0.8722 30 1 3.1459 1.4225 -0.0771 31 1 1.6408 1.9768 -0.8490 32 1 1.1472 1.6201 1.9087 33 1 0.5855 2.3392 3.5016 34 1 -0.0610 3.4598 5.5897 35 1 0.5891 5.7971 5.9959 36 1 1.9004 7.0295 4.3239 37 1 4.4222 8.1565 -0.4834 38 1 1.3433 -1.5098 -1.5702 39 1 2.3230 -0.0794 -2.0359 40 1 3.4591 -2.4378 -1.0851 41 1 4.2094 -0.8298 -0.8372 42 1 1.6867 -0.6366 2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361713986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:08 Heat of formation + Delta-G solvation = -97.589079 kcal Electronic energy + Delta-G solvation = -26557.013137 eV Core-core repulsion = 22694.602631 eV Total energy + Delta-G solvation = -3862.410506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85205 -41.13626 -39.76875 -38.27784 -38.01411 -35.30207 -34.32218 -32.54317 -32.28468 -31.36389 -30.57760 -27.85538 -27.23243 -25.38231 -24.28419 -23.04306 -22.06313 -21.41430 -21.15847 -19.86453 -19.41624 -18.14113 -17.76635 -17.42675 -16.61858 -16.48269 -16.28176 -15.94031 -15.87853 -15.60998 -15.34241 -15.33599 -14.92920 -14.55398 -14.39600 -14.24202 -14.07324 -13.81838 -13.55148 -13.44763 -13.16109 -12.96833 -12.71579 -12.56775 -12.50596 -12.36944 -12.15427 -11.98964 -11.86917 -11.44434 -10.98683 -10.82513 -10.65603 -10.24123 -10.12965 -9.79541 -9.04533 -8.44779 -6.15731 0.11183 0.71668 1.32504 1.45092 1.50059 1.53090 2.07827 2.13943 2.16362 2.39388 2.87391 3.21920 3.34436 3.45668 3.48399 3.61195 3.91082 3.97064 4.06150 4.09259 4.27671 4.40377 4.50135 4.56859 4.61014 4.73027 4.77855 4.87449 4.91476 4.96217 5.06639 5.09347 5.11299 5.13024 5.28817 5.46194 5.48324 5.59888 5.68594 5.82136 5.95618 5.99216 6.15548 6.63366 6.94497 7.19994 7.46299 7.79534 8.75374 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.003465 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.761020 B = 8078.635879 C = 9177.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 C 0.116 3.884 4 N -0.714 5.714 5 C 0.549 3.451 6 O -0.566 6.566 7 C -0.246 4.246 8 C -0.030 4.030 9 C -0.201 4.201 10 C -0.041 4.041 11 C -0.258 4.258 12 C 0.149 3.851 13 O -0.187 6.187 14 C -0.430 4.430 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.903 5.903 18 Si 1.021 2.979 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.111 4.111 23 C -0.156 4.156 24 C 0.512 3.488 25 O -0.589 6.589 26 N -0.713 5.713 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.407 0.593 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.271 0.729 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -15.667 1.335 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.067 3.933 3 C -0.009 4.009 4 N -0.369 5.369 5 C 0.338 3.662 6 O -0.445 6.445 7 C -0.251 4.251 8 C -0.049 4.049 9 C -0.220 4.220 10 C -0.059 4.059 11 C -0.278 4.278 12 C 0.094 3.906 13 O -0.090 6.090 14 C -0.506 4.506 15 H 0.123 0.877 16 C -0.219 4.219 17 N -0.539 5.539 18 Si 0.839 3.161 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.178 1.178 22 C -0.149 4.149 23 C -0.196 4.196 24 C 0.301 3.699 25 O -0.470 6.470 26 N -0.367 5.367 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -10.350 -15.632 0.563 18.756 hybrid contribution 0.371 1.082 0.678 1.329 sum -9.979 -14.551 1.241 17.687 Atomic orbital electron populations 1.22115 0.90397 1.04185 1.04243 1.21371 0.96573 0.88608 0.86737 1.21816 0.99445 0.92438 0.87198 1.45505 1.57914 1.11650 1.21858 1.18483 0.79128 0.82049 0.86493 1.90937 1.40279 1.65698 1.47570 1.19312 1.13061 0.93748 0.98978 1.21270 0.92501 0.99321 0.91775 1.21174 1.06479 0.95354 0.98954 1.21428 0.92326 0.94648 0.97476 1.21312 1.08476 1.02217 0.95765 1.20086 0.88979 0.92002 0.89567 1.84169 1.59899 1.22938 1.41958 1.21994 1.40757 0.82724 1.05124 0.87702 1.26727 0.95501 1.05665 0.94034 1.70306 1.37117 1.38729 1.07748 0.84643 0.79516 0.73369 0.78575 1.17975 1.19710 1.17790 1.22746 0.96342 1.00139 0.95640 1.22444 1.00968 1.05270 0.90945 1.21487 0.78447 0.77723 0.92281 1.90730 1.53592 1.43424 1.59235 1.46408 1.35738 1.42652 1.11875 0.89613 0.89452 0.91740 0.93553 0.90553 0.75541 0.82403 0.81898 0.82948 0.85961 0.91992 0.86365 0.87430 0.86138 0.87819 0.74935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.69 71.98 0.63 -0.85 16 2 C 0.15 2.23 0.83 4.06 0.00 2.23 16 3 C 0.12 2.84 4.71 86.38 0.41 3.25 16 4 N -0.71 -20.45 5.10 -466.26 -2.38 -22.83 16 5 C 0.55 23.93 7.76 86.69 0.67 24.61 16 6 O -0.57 -32.43 15.17 16.89 0.26 -32.17 16 7 C -0.25 -10.46 5.89 -19.99 -0.12 -10.57 16 8 C -0.03 -0.88 9.54 22.52 0.21 -0.67 16 9 C -0.20 -5.26 10.03 22.25 0.22 -5.03 16 10 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 11 C -0.26 -10.98 9.16 22.36 0.20 -10.78 16 12 C 0.15 7.61 6.66 22.91 0.15 7.76 16 13 O -0.19 -11.83 7.84 0.91 0.01 -11.83 16 14 C -0.43 -25.93 9.49 67.93 0.64 -25.28 16 15 H 0.11 5.67 5.21 -2.91 -0.02 5.65 16 16 C -0.02 -1.17 5.49 84.85 0.47 -0.70 16 17 N -0.90 -58.53 13.67 21.62 0.30 -58.23 16 18 Si 1.02 43.89 29.55 68.60 2.03 45.92 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 22 C -0.11 -1.13 6.21 31.65 0.20 -0.94 16 23 C -0.16 -2.34 6.86 30.59 0.21 -2.13 16 24 C 0.51 11.68 8.43 87.90 0.74 12.42 16 25 O -0.59 -19.20 18.03 -3.05 -0.05 -19.26 16 26 N -0.71 -12.39 5.18 -419.98 -2.18 -14.57 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.65 7.15 -2.39 -0.02 0.63 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.41 8.37 5.27 -92.71 -0.49 7.88 16 33 H 0.16 2.97 6.40 -2.91 -0.02 2.95 16 34 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 37 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 38 H 0.12 0.62 7.91 -2.39 -0.02 0.60 16 39 H 0.11 0.96 7.89 -2.39 -0.02 0.95 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.41 6.35 8.75 -92.71 -0.81 5.54 16 Total: -1.00 -94.30 353.14 2.63 -91.67 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.22 Total: 29.00 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.87 Total: -7.70 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -4.26 Total: -95.63 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: 0.21 Total: -63.25 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -94.30 2.63 -91.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361713986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.917 kcal (2) G-P(sol) polarization free energy of solvation -94.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds