Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47104 * 269.99713 * 3 2 1 5 5 H 1.48498 * 109.47373 * 29.99844 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99720 * 3 2 1 7 7 C 1.38655 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99953 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99354 * 180.02562 * 7 2 1 10 10 C 1.35758 * 116.99542 * 185.40227 * 9 7 2 11 11 C 1.38953 * 120.03010 * 185.89212 * 10 9 7 12 12 C 1.38123 * 120.06763 * 180.02562 * 11 10 9 13 13 C 1.38200 * 120.13905 * 359.70274 * 12 11 10 14 14 C 1.38922 * 120.06943 * 0.55460 * 13 12 11 15 15 N 1.39922 * 120.04007 * 179.74498 * 14 13 12 16 16 C 1.34775 * 120.00066 * 326.11331 * 15 14 13 17 17 O 1.21291 * 119.99569 * 354.80069 * 16 15 14 18 18 C 1.50691 * 120.00440 * 174.80110 * 16 15 14 19 19 C 1.53001 * 109.47616 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.73349 * 55.40705 * 19 18 16 21 21 C 1.53346 * 109.60463 * 175.81296 * 19 18 16 22 22 C 1.53072 * 108.42344 * 187.28646 * 21 19 18 23 23 C 1.50173 * 109.89136 * 311.10098 * 22 21 19 24 24 O 1.21286 * 118.24471 * 197.55988 * 23 22 21 25 25 N 1.32960 * 123.39447 * 17.52625 * 23 22 21 26 26 C 1.45748 * 124.41169 * 357.88235 * 25 23 22 27 27 C 1.38727 * 120.03502 * 5.92364 * 10 9 7 28 28 H 0.96996 * 119.99750 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96585 * 0.02766 * 11 10 9 30 30 H 1.07997 * 119.92762 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.97126 * 180.29739 * 13 12 11 32 32 H 0.97000 * 120.00029 * 146.11486 * 15 14 13 33 33 H 1.09003 * 109.47036 * 59.99713 * 18 16 15 34 34 H 1.09004 * 109.47057 * 300.00012 * 18 16 15 35 35 H 1.08997 * 109.67149 * 307.02121 * 21 19 18 36 36 H 1.09004 * 109.67292 * 67.55287 * 21 19 18 37 37 H 1.08997 * 109.39905 * 71.22886 * 22 21 19 38 38 H 1.08992 * 109.39932 * 191.05581 * 22 21 19 39 39 H 0.97007 * 117.64175 * 177.87362 * 25 23 22 40 40 H 1.09003 * 109.30300 * 258.75392 * 26 25 23 41 41 H 1.08999 * 109.30423 * 139.16898 * 26 25 23 42 42 H 1.08010 * 120.07181 * 359.95059 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4050 -0.1123 11 6 5.3554 -2.4926 0.0040 12 6 5.9833 -3.7174 -0.1118 13 6 5.2394 -4.8600 -0.3374 14 6 3.8580 -4.7783 -0.4599 15 7 3.1060 -5.9349 -0.6937 16 6 3.6177 -6.9316 -1.4427 17 8 4.6897 -6.7885 -1.9918 18 6 2.8582 -8.2238 -1.5980 19 6 3.6537 -9.1791 -2.4900 20 1 4.6538 -9.3189 -2.0796 21 6 2.9348 -10.5315 -2.5653 22 6 3.8382 -11.5188 -3.3084 23 6 4.3363 -10.8971 -4.5814 24 8 4.7874 -11.6271 -5.4386 25 7 4.3075 -9.5888 -4.8171 26 6 3.7547 -8.5989 -3.9012 27 6 3.2245 -3.5492 -0.3451 28 1 -0.4849 0.8400 -0.0004 29 1 5.9390 -1.6022 0.1851 30 1 7.0575 -3.7828 -0.0214 31 1 5.7328 -5.8170 -0.4226 32 1 2.2162 -6.0193 -0.3166 33 1 1.8887 -8.0228 -2.0540 34 1 2.7117 -8.6791 -0.6185 35 1 2.7391 -10.8996 -1.5582 36 1 1.9942 -10.4175 -3.1042 37 1 4.6871 -11.7791 -2.6763 38 1 3.2726 -12.4201 -3.5443 39 1 4.6802 -9.2743 -5.6556 40 1 2.7616 -8.3071 -4.2427 41 1 4.4021 -7.7221 -3.8848 42 1 2.1502 -3.4837 -0.4355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362109617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = -80.652505 kcal Electronic energy + Delta-G solvation = -25683.354539 eV Core-core repulsion = 21821.678458 eV Total energy + Delta-G solvation = -3861.676081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87477 -40.11239 -38.93948 -37.22656 -36.42204 -34.38788 -33.71424 -32.42636 -31.76900 -29.63980 -28.96316 -27.00647 -25.29362 -24.80008 -22.88723 -21.86591 -21.69942 -20.05230 -19.40781 -18.13003 -17.87022 -17.40370 -17.10097 -16.33206 -15.93905 -15.62724 -15.54493 -15.17299 -14.74016 -14.54488 -14.25719 -13.92195 -13.89152 -13.67804 -13.58764 -13.32917 -13.11592 -12.63190 -12.35071 -12.20435 -11.91882 -11.76685 -11.62830 -11.35489 -11.27555 -11.23976 -10.99229 -10.84843 -10.33768 -10.03053 -9.98909 -9.69044 -9.54449 -9.25308 -8.91487 -7.89543 -7.37746 -6.49026 -4.16344 1.78304 2.18901 2.42744 2.67942 3.05606 3.08723 3.17962 3.22265 3.36241 4.14622 4.18227 4.23940 4.28614 4.39764 4.44024 4.65460 4.80032 4.91379 5.00713 5.01928 5.05273 5.17859 5.23082 5.35560 5.40974 5.44885 5.55470 5.71237 5.83355 5.87272 5.89827 6.08554 6.11661 6.40211 6.51916 6.79708 6.82518 7.10018 7.11993 7.12300 7.46100 7.60157 7.69159 7.95006 7.98311 8.15585 8.86537 9.48509 10.58589 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.002422 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.392699 B =11559.764008 C =11987.535989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.105 0.895 9 O -0.215 6.215 10 C 0.174 3.826 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.198 4.198 14 C 0.178 3.822 15 N -0.669 5.669 16 C 0.509 3.491 17 O -0.520 6.520 18 C -0.134 4.134 19 C -0.088 4.088 20 H 0.091 0.909 21 C -0.121 4.121 22 C -0.135 4.135 23 C 0.517 3.483 24 O -0.567 6.567 25 N -0.714 5.714 26 C 0.105 3.895 27 C -0.244 4.244 28 H 0.280 0.720 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.409 0.591 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.399 0.601 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -17.914 -1.616 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.122 0.878 9 O -0.120 6.120 10 C 0.121 3.879 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.219 4.219 14 C 0.085 3.915 15 N -0.313 5.313 16 C 0.296 3.704 17 O -0.396 6.396 18 C -0.175 4.175 19 C -0.107 4.107 20 H 0.110 0.890 21 C -0.158 4.158 22 C -0.175 4.175 23 C 0.304 3.696 24 O -0.447 6.447 25 N -0.364 5.364 26 C -0.019 4.019 27 C -0.266 4.266 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.244 0.756 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.485 -17.946 -2.204 18.629 hybrid contribution -0.381 0.948 -0.074 1.024 sum 4.104 -16.999 -2.278 17.635 Atomic orbital electron populations 1.69640 1.05575 1.28578 1.47946 1.24467 0.95034 0.98894 0.95557 0.86180 0.80371 0.81362 0.79020 1.19878 1.20752 1.18270 1.20710 0.76881 0.96506 1.52474 0.87803 1.83622 1.22584 1.25358 1.80429 1.18821 0.91399 0.85142 0.92561 1.20261 0.91905 0.98234 1.11540 1.20534 0.98679 0.91479 0.97654 1.20580 0.92112 0.98978 1.10217 1.17414 0.90914 0.84852 0.98295 1.43542 1.19787 1.16508 1.51445 1.20721 0.86574 0.85089 0.78016 1.90702 1.22052 1.81144 1.45662 1.21704 1.00199 0.92979 1.02574 1.21214 1.00773 0.94048 0.94685 0.89020 1.21764 0.98629 0.93836 1.01607 1.21629 1.01541 0.99747 0.94536 1.20094 0.78087 0.82187 0.89230 1.90763 1.47803 1.59659 1.46473 1.45393 1.61592 1.06588 1.22840 1.21714 0.99917 0.91876 0.88360 1.20938 1.01332 0.90698 1.13594 0.91009 0.86370 0.86452 0.86197 0.75581 0.88104 0.87744 0.90069 0.90804 0.88137 0.88087 0.76555 0.91820 0.88124 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.96 55.48 0.77 -23.76 16 2 C 0.06 1.73 5.49 -17.51 -0.10 1.64 16 3 Si 0.91 21.07 28.62 -169.99 -4.86 16.21 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -10.53 9.90 30.89 0.31 -10.22 16 8 H 0.10 2.82 5.53 -52.49 -0.29 2.53 16 9 O -0.22 -5.46 8.59 0.02 0.00 -5.46 16 10 C 0.17 3.84 6.64 -39.14 -0.26 3.58 16 11 C -0.20 -3.84 9.99 -39.36 -0.39 -4.23 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.20 -3.39 8.65 -39.34 -0.34 -3.73 16 14 C 0.18 3.05 6.27 -83.72 -0.52 2.53 16 15 N -0.67 -8.45 5.34 -9.88 -0.05 -8.51 16 16 C 0.51 5.77 7.32 -10.99 -0.08 5.69 16 17 O -0.52 -7.60 11.73 5.55 0.07 -7.53 16 18 C -0.13 -0.86 5.18 -27.89 -0.14 -1.00 16 19 C -0.09 -0.61 1.90 -90.48 -0.17 -0.79 16 20 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16 21 C -0.12 -0.63 5.33 -26.52 -0.14 -0.77 16 22 C -0.13 -0.94 6.03 -28.10 -0.17 -1.11 16 23 C 0.52 5.54 7.71 -12.05 -0.09 5.44 16 24 O -0.57 -8.48 17.78 5.55 0.10 -8.38 16 25 N -0.71 -6.65 5.42 -61.49 -0.33 -6.99 16 26 C 0.11 0.88 6.11 -4.49 -0.03 0.85 16 27 C -0.24 -4.91 9.05 -39.21 -0.35 -5.26 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.12 1.97 6.45 -52.49 -0.34 1.63 16 32 H 0.41 3.99 8.82 -40.82 -0.36 3.63 16 33 H 0.10 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 3.59 8.79 -40.82 -0.36 3.23 16 40 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 41 H 0.10 1.05 6.17 -51.93 -0.32 0.73 16 42 H 0.14 2.81 5.71 -52.48 -0.30 2.51 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -33.49 349.12 -7.26 -40.74 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.32 Total: 7.29 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.89 Total: -8.87 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.39 Total: -39.26 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.16 Total: -21.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.49 -7.26 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362109617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.910 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds