Wall clock time and date at job start Tue Mar 31 2020 12:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47104 * 269.99713 * 3 2 1 5 5 H 1.48498 * 109.47373 * 29.99844 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99720 * 3 2 1 7 7 C 1.38655 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99953 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99354 * 180.02562 * 7 2 1 10 10 C 1.35758 * 116.99542 * 185.40227 * 9 7 2 11 11 C 1.38953 * 120.03010 * 185.89212 * 10 9 7 12 12 C 1.38123 * 120.06763 * 180.02562 * 11 10 9 13 13 C 1.38200 * 120.13905 * 359.70274 * 12 11 10 14 14 C 1.38922 * 120.06943 * 0.55460 * 13 12 11 15 15 N 1.39922 * 120.04007 * 179.74498 * 14 13 12 16 16 C 1.34775 * 120.00066 * 326.11331 * 15 14 13 17 17 O 1.21291 * 119.99569 * 354.80069 * 16 15 14 18 18 C 1.50691 * 120.00440 * 174.80110 * 16 15 14 19 19 C 1.53001 * 109.47616 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.73349 * 55.40705 * 19 18 16 21 21 C 1.53346 * 109.60463 * 175.81296 * 19 18 16 22 22 C 1.53072 * 108.42344 * 187.28646 * 21 19 18 23 23 C 1.50173 * 109.89136 * 311.10098 * 22 21 19 24 24 O 1.21286 * 118.24471 * 197.55988 * 23 22 21 25 25 N 1.32960 * 123.39447 * 17.52625 * 23 22 21 26 26 C 1.45748 * 124.41169 * 357.88235 * 25 23 22 27 27 C 1.38727 * 120.03502 * 5.92364 * 10 9 7 28 28 H 0.96996 * 119.99750 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96585 * 0.02766 * 11 10 9 30 30 H 1.07997 * 119.92762 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.97126 * 180.29739 * 13 12 11 32 32 H 0.97000 * 120.00029 * 146.11486 * 15 14 13 33 33 H 1.09003 * 109.47036 * 59.99713 * 18 16 15 34 34 H 1.09004 * 109.47057 * 300.00012 * 18 16 15 35 35 H 1.08997 * 109.67149 * 307.02121 * 21 19 18 36 36 H 1.09004 * 109.67292 * 67.55287 * 21 19 18 37 37 H 1.08997 * 109.39905 * 71.22886 * 22 21 19 38 38 H 1.08992 * 109.39932 * 191.05581 * 22 21 19 39 39 H 0.97007 * 117.64175 * 177.87362 * 25 23 22 40 40 H 1.09003 * 109.30300 * 258.75392 * 26 25 23 41 41 H 1.08999 * 109.30423 * 139.16898 * 26 25 23 42 42 H 1.08010 * 120.07181 * 359.95059 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4050 -0.1123 11 6 5.3554 -2.4926 0.0040 12 6 5.9833 -3.7174 -0.1118 13 6 5.2394 -4.8600 -0.3374 14 6 3.8580 -4.7783 -0.4599 15 7 3.1060 -5.9349 -0.6937 16 6 3.6177 -6.9316 -1.4427 17 8 4.6897 -6.7885 -1.9918 18 6 2.8582 -8.2238 -1.5980 19 6 3.6537 -9.1791 -2.4900 20 1 4.6538 -9.3189 -2.0796 21 6 2.9348 -10.5315 -2.5653 22 6 3.8382 -11.5188 -3.3084 23 6 4.3363 -10.8971 -4.5814 24 8 4.7874 -11.6271 -5.4386 25 7 4.3075 -9.5888 -4.8171 26 6 3.7547 -8.5989 -3.9012 27 6 3.2245 -3.5492 -0.3451 28 1 -0.4849 0.8400 -0.0004 29 1 5.9390 -1.6022 0.1851 30 1 7.0575 -3.7828 -0.0214 31 1 5.7328 -5.8170 -0.4226 32 1 2.2162 -6.0193 -0.3166 33 1 1.8887 -8.0228 -2.0540 34 1 2.7117 -8.6791 -0.6185 35 1 2.7391 -10.8996 -1.5582 36 1 1.9942 -10.4175 -3.1042 37 1 4.6871 -11.7791 -2.6763 38 1 3.2726 -12.4201 -3.5443 39 1 4.6802 -9.2743 -5.6556 40 1 2.7616 -8.3071 -4.2427 41 1 4.4021 -7.7221 -3.8848 42 1 2.1502 -3.4837 -0.4355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362109617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:53 Heat of formation + Delta-G solvation = -104.871992 kcal Electronic energy + Delta-G solvation = -25684.404774 eV Core-core repulsion = 21821.678458 eV Total energy + Delta-G solvation = -3862.726316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78310 -41.16642 -40.39463 -38.43874 -37.54217 -35.60193 -34.44435 -34.35315 -32.44270 -31.06270 -30.39744 -27.87373 -27.12382 -25.42183 -23.87573 -23.39439 -22.66873 -21.22902 -20.04242 -19.84000 -19.33320 -18.23908 -18.16924 -17.20603 -17.07739 -16.91671 -16.59111 -16.32568 -16.05598 -15.70855 -15.56591 -15.36452 -15.01947 -14.77954 -14.46753 -14.30422 -14.19125 -14.01683 -13.94441 -13.36240 -13.07437 -12.82696 -12.66854 -12.50567 -12.41473 -12.22178 -12.06299 -11.94625 -11.75082 -11.49873 -11.25636 -10.89447 -10.82212 -10.64850 -10.07335 -9.37692 -8.89915 -8.49253 -6.21231 0.40084 0.66428 1.33471 1.36439 1.53092 1.61894 1.67808 2.10184 2.29184 2.35619 2.79061 3.10374 3.13044 3.55783 3.60013 3.72291 3.83420 4.00870 4.14977 4.33119 4.40152 4.43036 4.44910 4.55442 4.63136 4.66475 4.70842 4.78468 4.85354 4.92735 4.96397 5.00535 5.18080 5.36704 5.37938 5.41376 5.52208 5.65094 5.75345 5.77149 5.91165 6.22808 6.36139 6.52236 6.85860 7.18146 7.19066 7.60005 8.61880 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.002422 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.392699 B =11559.764008 C =11987.535989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.396 4.396 8 H 0.086 0.914 9 O -0.243 6.243 10 C 0.138 3.862 11 C -0.206 4.206 12 C -0.055 4.055 13 C -0.191 4.191 14 C 0.186 3.814 15 N -0.666 5.666 16 C 0.506 3.494 17 O -0.553 6.553 18 C -0.121 4.121 19 C -0.085 4.085 20 H 0.078 0.922 21 C -0.110 4.110 22 C -0.132 4.132 23 C 0.509 3.491 24 O -0.619 6.619 25 N -0.711 5.711 26 C 0.104 3.896 27 C -0.256 4.256 28 H 0.284 0.716 29 H 0.130 0.870 30 H 0.156 0.844 31 H 0.134 0.866 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.396 0.604 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -19.657 -0.780 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.104 0.896 9 O -0.150 6.150 10 C 0.088 3.912 11 C -0.226 4.226 12 C -0.073 4.073 13 C -0.212 4.212 14 C 0.091 3.909 15 N -0.312 5.312 16 C 0.297 3.703 17 O -0.431 6.431 18 C -0.161 4.161 19 C -0.104 4.104 20 H 0.097 0.903 21 C -0.147 4.147 22 C -0.171 4.171 23 C 0.298 3.702 24 O -0.503 6.503 25 N -0.359 5.359 26 C -0.019 4.019 27 C -0.278 4.278 28 H 0.094 0.906 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.261 0.739 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.231 0.769 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.044 -19.719 -1.349 20.398 hybrid contribution -0.375 1.221 -0.396 1.337 sum 4.669 -18.498 -1.745 19.158 Atomic orbital electron populations 1.69712 1.06739 1.29522 1.50159 1.25208 0.95833 1.01942 0.95634 0.85294 0.78983 0.77853 0.79120 1.19452 1.19308 1.18630 1.20691 0.77971 0.96133 1.52422 0.89642 1.83566 1.21388 1.27120 1.82911 1.19380 0.92811 0.84873 0.94091 1.20526 0.90778 0.99828 1.11440 1.20972 1.00592 0.90252 0.95530 1.20915 0.92102 0.99697 1.08443 1.17474 0.91483 0.85413 0.96535 1.43641 1.20305 1.15391 1.51841 1.21691 0.86348 0.85867 0.76431 1.90698 1.23849 1.81794 1.46741 1.21771 1.00082 0.89705 1.04522 1.21197 1.00678 0.95203 0.93371 0.90317 1.21743 0.98030 0.91843 1.03099 1.21685 1.02374 1.00322 0.92732 1.20852 0.77268 0.82110 0.90003 1.90735 1.50293 1.60793 1.48470 1.45488 1.60860 1.06671 1.22892 1.21776 0.99862 0.90865 0.89445 1.20930 1.00661 0.91700 1.14459 0.90629 0.85243 0.82661 0.84846 0.73886 0.85488 0.84314 0.87125 0.89799 0.87211 0.87112 0.76917 0.90413 0.90429 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.93 13.96 21.61 0.30 -52.63 16 2 C 0.01 0.70 5.49 84.83 0.47 1.17 16 3 Si 0.96 44.17 28.62 68.60 1.96 46.13 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.40 -22.24 9.90 67.92 0.67 -21.57 16 8 H 0.09 4.93 5.53 -2.91 -0.02 4.92 16 9 O -0.24 -12.69 8.59 -22.84 -0.20 -12.88 16 10 C 0.14 6.21 6.64 22.56 0.15 6.36 16 11 C -0.21 -7.71 9.99 22.41 0.22 -7.49 16 12 C -0.06 -1.72 10.03 22.23 0.22 -1.49 16 13 C -0.19 -6.07 8.65 22.42 0.19 -5.88 16 14 C 0.19 6.12 6.27 38.14 0.24 6.36 16 15 N -0.67 -15.38 5.34 -303.56 -1.62 -17.00 16 16 C 0.51 10.05 7.32 87.65 0.64 10.70 16 17 O -0.55 -15.06 11.73 -3.06 -0.04 -15.09 16 18 C -0.12 -1.02 5.18 29.85 0.15 -0.87 16 19 C -0.09 -0.90 1.90 -10.70 -0.02 -0.92 16 20 H 0.08 1.09 7.96 -2.39 -0.02 1.07 16 21 C -0.11 -0.67 5.33 30.73 0.16 -0.51 16 22 C -0.13 -1.50 6.03 29.71 0.18 -1.32 16 23 C 0.51 10.47 7.71 87.77 0.68 11.14 16 24 O -0.62 -18.72 17.78 -3.05 -0.05 -18.77 16 25 N -0.71 -12.75 5.42 -467.84 -2.54 -15.29 16 26 C 0.10 1.55 6.11 86.49 0.53 2.08 16 27 C -0.26 -10.44 9.05 22.51 0.20 -10.24 16 28 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.13 3.97 6.45 -2.91 -0.02 3.95 16 32 H 0.42 7.29 8.82 -92.71 -0.82 6.47 16 33 H 0.13 0.54 8.12 -2.39 -0.02 0.52 16 34 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.08 0.42 8.13 -2.38 -0.02 0.40 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.40 7.23 8.79 -92.70 -0.81 6.42 16 40 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.08 1.56 6.17 -2.39 -0.01 1.55 16 42 H 0.12 5.23 5.71 -2.91 -0.02 5.21 16 Total: -1.00 -76.95 349.12 1.97 -74.98 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.55 Total: 23.01 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.70 Total: -12.47 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.86 Total: -84.92 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.29 Total: -46.74 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.96 Total: 46.13 kcal Total: -76.95 1.97 -74.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362109617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.887 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds