Wall clock time and date at job start Tue Mar 31 2020 12:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86810 * 119.99622 * 2 1 4 4 H 1.48500 * 109.46799 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.46981 * 29.99888 * 3 2 1 6 6 H 1.48502 * 109.46639 * 150.00004 * 3 2 1 7 7 C 1.38643 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99811 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.35761 * 116.99968 * 174.96492 * 9 7 2 11 11 C 1.38950 * 120.03156 * 185.36511 * 10 9 7 12 12 C 1.38128 * 120.07231 * 179.97438 * 11 10 9 13 13 C 1.38206 * 120.13430 * 359.74361 * 12 11 10 14 14 C 1.38926 * 120.06613 * 0.50645 * 13 12 11 15 15 N 1.39924 * 120.03405 * 179.76634 * 14 13 12 16 16 C 1.34775 * 120.00483 * 324.64057 * 15 14 13 17 17 O 1.21287 * 119.99497 * 4.51453 * 16 15 14 18 18 C 1.50699 * 120.00133 * 184.52334 * 16 15 14 19 19 C 1.52998 * 109.46952 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.60368 * 304.99790 * 19 18 16 21 21 C 1.53340 * 109.60317 * 184.67115 * 19 18 16 22 22 C 1.53018 * 108.46542 * 172.88279 * 21 19 18 23 23 C 1.50181 * 110.00012 * 48.63684 * 22 21 19 24 24 O 1.21278 * 118.24095 * 162.55262 * 23 22 21 25 25 N 1.33350 * 123.51055 * 342.52795 * 23 22 21 26 26 C 1.45758 * 124.10772 * 2.24700 * 25 23 22 27 27 C 1.38726 * 120.03253 * 5.33925 * 10 9 7 28 28 H 0.96994 * 120.00098 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.96421 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.93206 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.96704 * 180.27706 * 13 12 11 32 32 H 0.97001 * 119.99726 * 144.35703 * 15 14 13 33 33 H 1.09002 * 109.46467 * 299.99251 * 18 16 15 34 34 H 1.08997 * 109.47245 * 59.99281 * 18 16 15 35 35 H 1.08997 * 109.67767 * 292.44273 * 21 19 18 36 36 H 1.08999 * 109.67563 * 52.98088 * 21 19 18 37 37 H 1.08998 * 109.24843 * 288.53210 * 22 21 19 38 38 H 1.08995 * 109.36337 * 168.81228 * 22 21 19 39 39 H 0.96998 * 117.94959 * 182.22639 * 25 23 22 40 40 H 1.08998 * 109.30339 * 220.59354 * 26 25 23 41 41 H 1.08997 * 109.29787 * 101.21478 * 26 25 23 42 42 H 1.08001 * 120.07444 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3348 -2.3683 0.0016 10 6 2.0701 -3.5046 -0.1041 11 6 1.4356 -4.7352 -0.2217 12 6 2.1830 -5.8918 -0.3299 13 6 3.5636 -5.8286 -0.3267 14 6 4.2039 -4.6018 -0.2042 15 7 5.6017 -4.5390 -0.1962 16 6 6.3171 -5.5217 0.3860 17 8 5.7543 -6.4999 0.8303 18 6 7.8164 -5.4051 0.4849 19 6 8.3792 -6.6443 1.1837 20 1 7.8899 -6.7737 2.1492 21 6 9.8894 -6.4769 1.3906 22 6 10.3936 -7.6419 2.2450 23 6 9.8799 -8.9418 1.6957 24 8 10.4277 -9.9672 2.0411 25 7 8.8536 -9.0289 0.8488 26 6 8.1344 -7.8789 0.3151 27 6 3.4558 -3.4383 -0.0953 28 1 -0.4850 0.8400 -0.0004 29 1 0.3569 -4.7874 -0.2286 30 1 1.6875 -6.8470 -0.4208 31 1 4.1453 -6.7341 -0.4159 32 1 6.0560 -3.7903 -0.6133 33 1 8.2415 -5.3273 -0.5158 34 1 8.0745 -4.5156 1.0595 35 1 10.3955 -6.4877 0.4253 36 1 10.0878 -5.5334 1.8990 37 1 10.0400 -7.5163 3.2684 38 1 11.4835 -7.6508 2.2369 39 1 8.5678 -9.9130 0.5701 40 1 7.0671 -8.0991 0.2947 41 1 8.4774 -7.6789 -0.7000 42 1 3.9513 -2.4830 -0.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362109619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:58 Heat of formation + Delta-G solvation = -81.423084 kcal Electronic energy + Delta-G solvation = -25658.744122 eV Core-core repulsion = 21797.034626 eV Total energy + Delta-G solvation = -3861.709495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85418 -40.07077 -38.78426 -37.16936 -36.31270 -34.33757 -33.71546 -32.30694 -31.76587 -29.53425 -28.73553 -26.96942 -25.36284 -24.80969 -22.85247 -21.88784 -21.63088 -20.11256 -19.41608 -18.05984 -17.87165 -17.41779 -16.96489 -16.28151 -15.94221 -15.60720 -15.44350 -15.04853 -14.80394 -14.46328 -14.24764 -14.05211 -13.86156 -13.63672 -13.57542 -13.30295 -13.03680 -12.66396 -12.35980 -11.93551 -11.79194 -11.68341 -11.56414 -11.40622 -11.26575 -11.18328 -11.02730 -10.85715 -10.50355 -10.05520 -9.90591 -9.63674 -9.47165 -9.27648 -8.86434 -7.81946 -7.23246 -6.50093 -4.10295 1.88158 2.31018 2.40224 2.69235 3.04142 3.06841 3.07608 3.11970 3.12754 3.90552 4.14019 4.23611 4.28501 4.39345 4.51160 4.67822 4.89741 5.00256 5.03248 5.05198 5.14350 5.22652 5.24577 5.35386 5.40562 5.43858 5.63647 5.70679 5.87483 5.93055 6.00655 6.17199 6.21335 6.50504 6.57370 6.88657 6.91870 7.05259 7.08587 7.24732 7.36153 7.59240 7.74143 7.93639 7.96040 8.18741 8.95029 9.65046 10.67852 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.002490 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.118666 B =11241.002352 C =12301.108827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.167 3.833 11 C -0.198 4.198 12 C -0.066 4.066 13 C -0.205 4.205 14 C 0.175 3.825 15 N -0.668 5.668 16 C 0.508 3.492 17 O -0.520 6.520 18 C -0.134 4.134 19 C -0.089 4.089 20 H 0.092 0.908 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.518 3.482 24 O -0.566 6.566 25 N -0.716 5.716 26 C 0.107 3.893 27 C -0.256 4.256 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 -8.473 -1.019 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.218 4.218 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.082 3.918 15 N -0.312 5.312 16 C 0.295 3.705 17 O -0.396 6.396 18 C -0.174 4.174 19 C -0.108 4.108 20 H 0.110 0.890 21 C -0.158 4.158 22 C -0.174 4.174 23 C 0.305 3.695 24 O -0.445 6.445 25 N -0.366 5.366 26 C -0.017 4.017 27 C -0.278 4.278 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.242 0.758 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.235 0.765 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.750 -9.241 -0.400 20.015 hybrid contribution 0.481 1.127 -0.369 1.280 sum 18.230 -8.114 -0.768 19.969 Atomic orbital electron populations 1.70035 1.05942 1.27706 1.45928 1.25285 0.95841 0.98809 0.96557 0.85723 0.78882 0.80179 0.78670 1.19882 1.20233 1.19287 1.21263 0.91650 0.80850 1.53174 0.89239 1.84011 1.33995 1.11345 1.78567 1.19078 0.89441 0.88185 0.92046 1.20285 0.99793 0.90302 1.11406 1.20565 0.93203 0.96844 0.97830 1.20655 0.94299 0.96385 1.11186 1.17419 0.80902 0.94208 0.99230 1.43498 1.05654 1.25393 1.56695 1.20710 0.89630 0.82770 0.77390 1.90690 1.72102 1.30051 1.46722 1.21699 0.91890 1.00183 1.03637 1.21213 0.95699 0.93214 1.00681 0.88952 1.21747 0.94680 0.98585 1.00788 1.21615 1.02907 0.91632 1.01282 1.20207 0.79374 0.91644 0.78290 1.90757 1.57521 1.36750 1.59487 1.45467 1.33365 1.10713 1.47103 1.21673 0.98581 0.85294 0.96185 1.20822 0.93974 0.97588 1.15380 0.91971 0.86392 0.86645 0.85907 0.75798 0.88242 0.87770 0.90892 0.90020 0.88079 0.88056 0.76532 0.88245 0.91985 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.39 -10.56 9.49 30.88 0.29 -10.27 16 8 H 0.09 2.19 5.20 -52.48 -0.27 1.92 16 9 O -0.18 -4.87 9.76 0.03 0.00 -4.87 16 10 C 0.17 3.90 6.65 -39.14 -0.26 3.64 16 11 C -0.20 -4.11 9.99 -39.36 -0.39 -4.50 16 12 C -0.07 -1.18 10.03 -39.63 -0.40 -1.58 16 13 C -0.20 -3.64 8.69 -39.34 -0.34 -3.98 16 14 C 0.18 3.07 6.29 -83.72 -0.53 2.54 16 15 N -0.67 -8.46 5.33 -9.88 -0.05 -8.52 16 16 C 0.51 5.80 7.43 -10.99 -0.08 5.72 16 17 O -0.52 -7.67 11.48 5.55 0.06 -7.61 16 18 C -0.13 -0.85 5.18 -27.88 -0.14 -1.00 16 19 C -0.09 -0.62 1.89 -90.48 -0.17 -0.79 16 20 H 0.09 0.82 7.94 -51.93 -0.41 0.40 16 21 C -0.12 -0.63 5.33 -26.55 -0.14 -0.77 16 22 C -0.13 -0.95 6.03 -28.13 -0.17 -1.12 16 23 C 0.52 5.46 7.72 -11.87 -0.09 5.36 16 24 O -0.57 -8.35 17.78 5.56 0.10 -8.25 16 25 N -0.72 -6.39 5.45 -61.38 -0.33 -6.73 16 26 C 0.11 0.83 6.12 -4.48 -0.03 0.81 16 27 C -0.26 -5.23 9.08 -39.21 -0.36 -5.59 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.12 2.09 6.24 -52.49 -0.33 1.76 16 32 H 0.41 3.85 8.82 -40.82 -0.36 3.49 16 33 H 0.10 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 3.38 8.80 -40.82 -0.36 3.02 16 40 H 0.10 0.96 6.19 -51.93 -0.32 0.64 16 41 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.13 2.58 5.63 -52.49 -0.30 2.28 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -34.75 349.91 -7.41 -42.16 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.28 Total: 8.37 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.91 Total: -10.57 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.37 Total: -39.14 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.16 Total: -20.73 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.75 -7.41 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362109619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.268 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds