Wall clock time and date at job start Tue Mar 31 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86810 * 119.99622 * 2 1 4 4 H 1.48500 * 109.46799 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.46981 * 29.99888 * 3 2 1 6 6 H 1.48502 * 109.46639 * 150.00004 * 3 2 1 7 7 C 1.38643 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99811 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.35761 * 116.99968 * 174.96492 * 9 7 2 11 11 C 1.38950 * 120.03156 * 185.36511 * 10 9 7 12 12 C 1.38128 * 120.07231 * 179.97438 * 11 10 9 13 13 C 1.38206 * 120.13430 * 359.74361 * 12 11 10 14 14 C 1.38926 * 120.06613 * 0.50645 * 13 12 11 15 15 N 1.39924 * 120.03405 * 179.76634 * 14 13 12 16 16 C 1.34775 * 120.00483 * 324.64057 * 15 14 13 17 17 O 1.21287 * 119.99497 * 4.51453 * 16 15 14 18 18 C 1.50699 * 120.00133 * 184.52334 * 16 15 14 19 19 C 1.52998 * 109.46952 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.60368 * 304.99790 * 19 18 16 21 21 C 1.53340 * 109.60317 * 184.67115 * 19 18 16 22 22 C 1.53018 * 108.46542 * 172.88279 * 21 19 18 23 23 C 1.50181 * 110.00012 * 48.63684 * 22 21 19 24 24 O 1.21278 * 118.24095 * 162.55262 * 23 22 21 25 25 N 1.33350 * 123.51055 * 342.52795 * 23 22 21 26 26 C 1.45758 * 124.10772 * 2.24700 * 25 23 22 27 27 C 1.38726 * 120.03253 * 5.33925 * 10 9 7 28 28 H 0.96994 * 120.00098 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.96421 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.93206 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.96704 * 180.27706 * 13 12 11 32 32 H 0.97001 * 119.99726 * 144.35703 * 15 14 13 33 33 H 1.09002 * 109.46467 * 299.99251 * 18 16 15 34 34 H 1.08997 * 109.47245 * 59.99281 * 18 16 15 35 35 H 1.08997 * 109.67767 * 292.44273 * 21 19 18 36 36 H 1.08999 * 109.67563 * 52.98088 * 21 19 18 37 37 H 1.08998 * 109.24843 * 288.53210 * 22 21 19 38 38 H 1.08995 * 109.36337 * 168.81228 * 22 21 19 39 39 H 0.96998 * 117.94959 * 182.22639 * 25 23 22 40 40 H 1.08998 * 109.30339 * 220.59354 * 26 25 23 41 41 H 1.08997 * 109.29787 * 101.21478 * 26 25 23 42 42 H 1.08001 * 120.07444 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3348 -2.3683 0.0016 10 6 2.0701 -3.5046 -0.1041 11 6 1.4356 -4.7352 -0.2217 12 6 2.1830 -5.8918 -0.3299 13 6 3.5636 -5.8286 -0.3267 14 6 4.2039 -4.6018 -0.2042 15 7 5.6017 -4.5390 -0.1962 16 6 6.3171 -5.5217 0.3860 17 8 5.7543 -6.4999 0.8303 18 6 7.8164 -5.4051 0.4849 19 6 8.3792 -6.6443 1.1837 20 1 7.8899 -6.7737 2.1492 21 6 9.8894 -6.4769 1.3906 22 6 10.3936 -7.6419 2.2450 23 6 9.8799 -8.9418 1.6957 24 8 10.4277 -9.9672 2.0411 25 7 8.8536 -9.0289 0.8488 26 6 8.1344 -7.8789 0.3151 27 6 3.4558 -3.4383 -0.0953 28 1 -0.4850 0.8400 -0.0004 29 1 0.3569 -4.7874 -0.2286 30 1 1.6875 -6.8470 -0.4208 31 1 4.1453 -6.7341 -0.4159 32 1 6.0560 -3.7903 -0.6133 33 1 8.2415 -5.3273 -0.5158 34 1 8.0745 -4.5156 1.0595 35 1 10.3955 -6.4877 0.4253 36 1 10.0878 -5.5334 1.8990 37 1 10.0400 -7.5163 3.2684 38 1 11.4835 -7.6508 2.2369 39 1 8.5678 -9.9130 0.5701 40 1 7.0671 -8.0991 0.2947 41 1 8.4774 -7.6789 -0.7000 42 1 3.9513 -2.4830 -0.0040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362109619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:57 Heat of formation + Delta-G solvation = -107.228890 kcal Electronic energy + Delta-G solvation = -25659.863146 eV Core-core repulsion = 21797.034626 eV Total energy + Delta-G solvation = -3862.828519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74775 -41.10756 -40.28927 -38.34913 -37.50664 -35.58051 -34.39687 -34.19624 -32.43636 -30.97917 -30.23906 -27.85338 -27.18527 -25.40597 -23.83224 -23.46212 -22.63908 -21.29738 -20.01004 -19.76151 -19.25374 -18.19079 -18.10125 -17.18130 -17.11246 -16.71725 -16.49685 -16.34409 -15.98529 -15.86088 -15.48766 -15.33637 -15.04717 -14.66053 -14.45759 -14.34006 -14.12015 -13.92883 -13.56035 -13.29745 -13.04085 -12.76206 -12.63158 -12.47835 -12.43327 -12.19589 -12.09503 -11.91844 -11.74075 -11.41067 -11.17421 -10.83495 -10.72825 -10.61704 -10.04567 -9.31721 -8.85408 -8.44308 -6.13390 0.43724 0.72739 1.38060 1.47448 1.55696 1.61635 1.68806 2.12906 2.20184 2.36895 2.86143 3.18840 3.51798 3.56811 3.62207 3.74545 3.84152 4.03118 4.15907 4.36333 4.41527 4.45381 4.47778 4.56337 4.67042 4.68800 4.74846 4.80017 4.88499 4.95625 5.01304 5.06807 5.13507 5.20052 5.38868 5.43788 5.52729 5.69555 5.70532 5.78775 6.03822 6.21599 6.36327 6.55762 7.00015 7.19154 7.23042 7.80352 8.78817 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.002490 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.118666 B =11241.002352 C =12301.108827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.412 4.412 8 H 0.106 0.894 9 O -0.229 6.229 10 C 0.131 3.869 11 C -0.217 4.217 12 C -0.057 4.057 13 C -0.198 4.198 14 C 0.187 3.813 15 N -0.663 5.663 16 C 0.505 3.495 17 O -0.555 6.555 18 C -0.120 4.120 19 C -0.088 4.088 20 H 0.071 0.929 21 C -0.109 4.109 22 C -0.133 4.133 23 C 0.509 3.491 24 O -0.618 6.618 25 N -0.712 5.712 26 C 0.106 3.894 27 C -0.260 4.260 28 H 0.272 0.728 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.425 0.575 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.398 0.602 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.864 -7.931 -1.582 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.488 4.488 8 H 0.123 0.877 9 O -0.136 6.136 10 C 0.080 3.920 11 C -0.237 4.237 12 C -0.075 4.075 13 C -0.218 4.218 14 C 0.092 3.908 15 N -0.309 5.309 16 C 0.295 3.705 17 O -0.432 6.432 18 C -0.159 4.159 19 C -0.107 4.107 20 H 0.089 0.911 21 C -0.146 4.146 22 C -0.172 4.172 23 C 0.298 3.702 24 O -0.502 6.502 25 N -0.361 5.361 26 C -0.018 4.018 27 C -0.281 4.281 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.263 0.737 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.473 -8.719 -0.988 23.197 hybrid contribution -0.578 0.603 -0.209 0.860 sum 20.896 -8.117 -1.197 22.449 Atomic orbital electron populations 1.70197 1.08160 1.28774 1.48894 1.26628 0.96826 1.02872 0.95890 0.84571 0.77920 0.74388 0.79236 1.18751 1.20149 1.17147 1.21832 0.92608 0.81243 1.53095 0.87664 1.83981 1.35769 1.12550 1.81270 1.19621 0.90995 0.87911 0.93488 1.20482 1.00095 0.90614 1.12540 1.20941 0.93492 0.97190 0.95887 1.21006 0.94381 0.97082 1.09373 1.17452 0.83477 0.92964 0.96885 1.43552 1.03489 1.26750 1.57089 1.21715 0.91627 0.81405 0.75719 1.90688 1.73264 1.31421 1.47857 1.21759 0.87271 1.00758 1.06139 1.21196 0.97053 0.92999 0.99480 0.91097 1.21724 0.92819 0.98620 1.01484 1.21667 1.03497 0.90387 1.01670 1.20917 0.79076 0.92374 0.77807 1.90729 1.59305 1.38779 1.61371 1.45557 1.32822 1.11302 1.46401 1.21762 0.97267 0.85232 0.97531 1.20878 0.93047 0.98816 1.15407 0.91928 0.86802 0.83287 0.84392 0.73687 0.84646 0.84967 0.89340 0.87491 0.87649 0.87043 0.76746 0.90256 0.89776 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.67 21.61 0.30 -55.08 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 40.56 29.55 68.60 2.03 42.58 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.41 -22.87 9.49 67.92 0.64 -22.23 16 8 H 0.11 5.21 5.20 -2.91 -0.02 5.19 16 9 O -0.23 -13.40 9.76 -22.82 -0.22 -13.62 16 10 C 0.13 6.33 6.65 22.56 0.15 6.48 16 11 C -0.22 -9.23 9.99 22.41 0.22 -9.00 16 12 C -0.06 -1.96 10.03 22.24 0.22 -1.74 16 13 C -0.20 -6.62 8.69 22.43 0.19 -6.42 16 14 C 0.19 6.18 6.29 38.14 0.24 6.42 16 15 N -0.66 -14.50 5.33 -303.55 -1.62 -16.12 16 16 C 0.51 9.67 7.43 87.66 0.65 10.32 16 17 O -0.55 -14.97 11.48 -3.05 -0.04 -15.00 16 18 C -0.12 -0.90 5.18 29.85 0.15 -0.74 16 19 C -0.09 -0.89 1.89 -10.71 -0.02 -0.91 16 20 H 0.07 1.07 7.94 -2.39 -0.02 1.05 16 21 C -0.11 -0.63 5.33 30.71 0.16 -0.46 16 22 C -0.13 -1.51 6.03 29.69 0.18 -1.34 16 23 C 0.51 10.17 7.72 87.72 0.68 10.85 16 24 O -0.62 -18.36 17.78 -3.02 -0.05 -18.41 16 25 N -0.71 -11.79 5.45 -467.31 -2.55 -14.33 16 26 C 0.11 1.36 6.12 86.49 0.53 1.89 16 27 C -0.26 -10.54 9.08 22.51 0.20 -10.34 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.14 4.29 6.24 -2.91 -0.02 4.27 16 32 H 0.42 6.29 8.82 -92.71 -0.82 5.47 16 33 H 0.14 0.19 8.11 -2.39 -0.02 0.17 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.31 8.13 -2.39 -0.02 0.29 16 36 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.40 6.57 8.80 -92.71 -0.82 5.76 16 40 H 0.08 1.39 6.19 -2.39 -0.01 1.38 16 41 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 42 H 0.13 5.15 5.63 -2.91 -0.02 5.13 16 Total: -1.00 -82.35 349.91 1.98 -80.37 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.55 Total: 27.73 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.68 Total: -18.12 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.87 Total: -85.53 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.31 Total: -47.03 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -82.35 1.98 -80.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362109619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.855 kcal (2) G-P(sol) polarization free energy of solvation -82.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds