Wall clock time and date at job start Tue Mar 31 2020 13:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 C 1.50699 * 109.47727 * 239.99459 * 2 1 3 5 5 H 1.08000 * 120.00369 * 240.84386 * 4 2 1 6 6 C 1.37873 * 119.99683 * 60.83439 * 4 2 1 7 7 N 1.31518 * 120.00483 * 194.57905 * 6 4 2 8 8 Si 1.86801 * 120.00175 * 14.58315 * 6 4 2 9 9 H 1.48504 * 109.47450 * 84.45285 * 8 6 4 10 10 H 1.48501 * 109.47311 * 204.45278 * 8 6 4 11 11 H 1.48496 * 109.47181 * 324.45277 * 8 6 4 12 12 C 1.53006 * 109.46874 * 119.99534 * 2 1 3 13 13 S 1.81400 * 109.47229 * 300.00180 * 12 2 1 14 14 O 1.42104 * 110.54064 * 68.37320 * 13 12 2 15 15 O 1.42109 * 110.54206 * 291.62603 * 13 12 2 16 16 N 1.65594 * 104.44979 * 179.97438 * 13 12 2 17 17 C 1.46496 * 119.99818 * 65.00330 * 16 13 12 18 18 C 1.53008 * 109.47119 * 164.99857 * 17 16 13 19 19 C 1.52998 * 110.21420 * 300.69975 * 18 17 16 20 20 C 1.54479 * 110.24322 * 178.77037 * 18 17 16 21 21 C 1.54637 * 101.76121 * 215.49391 * 20 18 17 22 22 C 1.51283 * 104.19317 * 24.80227 * 21 20 18 23 23 O 1.21275 * 124.93860 * 163.78730 * 22 21 20 24 24 N 1.34411 * 110.11679 * 343.74118 * 22 21 20 25 25 H 1.08999 * 109.47180 * 310.24067 * 1 2 3 26 26 H 1.09008 * 109.46723 * 70.23807 * 1 2 3 27 27 H 1.08994 * 109.47209 * 190.23158 * 1 2 3 28 28 H 1.08998 * 109.47368 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46399 * 299.99627 * 3 2 1 30 30 H 1.09000 * 109.46905 * 59.99017 * 3 2 1 31 31 H 0.96993 * 120.00844 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47226 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.46802 * 59.99984 * 12 2 1 34 34 H 0.97001 * 120.00456 * 244.99835 * 16 13 12 35 35 H 1.08995 * 109.47648 * 44.99700 * 17 16 13 36 36 H 1.08999 * 109.47125 * 284.99730 * 17 16 13 37 37 H 1.09008 * 109.47091 * 298.06497 * 19 18 17 38 38 H 1.09000 * 109.46702 * 178.07248 * 19 18 17 39 39 H 1.08995 * 109.47088 * 58.06935 * 19 18 17 40 40 H 1.08998 * 110.97597 * 333.61000 * 20 18 17 41 41 H 1.09005 * 110.97161 * 97.34442 * 20 18 17 42 42 H 1.09008 * 110.48482 * 143.47735 * 21 20 18 43 43 H 1.08994 * 110.48840 * 266.11663 * 21 20 18 44 44 H 0.97002 * 124.35202 * 179.59569 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6421 -1.5964 -1.1312 6 6 1.7137 -0.2296 -2.4825 7 7 1.8971 -0.9849 -3.5435 8 14 1.0214 1.4950 -2.6724 9 1 2.1372 2.4735 -2.7242 10 1 0.2330 1.5764 -3.9282 11 1 0.1435 1.8060 -1.5158 12 6 2.0400 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8543 15 8 2.0479 1.4103 2.8544 16 7 2.0528 -0.7406 3.9937 17 6 3.5011 -0.7978 4.2061 18 6 3.7899 -1.3342 5.6097 19 6 3.1504 -0.4283 6.6638 20 6 5.3141 -1.4311 5.8417 21 6 5.4200 -2.7043 6.7130 22 6 4.1781 -3.4955 6.3660 23 8 4.0121 -4.6711 6.6131 24 7 3.2853 -2.7057 5.7450 25 1 -0.3633 0.6639 0.7844 26 1 -0.3633 0.3475 -0.9672 27 1 -0.3633 -1.0113 0.1825 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6725 -0.6468 -4.4244 32 1 3.1300 -0.7208 1.2497 33 1 1.6766 -1.7488 1.2494 34 1 1.4556 -1.2149 4.5931 35 1 3.9230 0.2021 4.1054 36 1 3.9512 -1.4584 3.4650 37 1 3.5851 0.5691 6.5977 38 1 3.3343 -0.8398 7.6563 39 1 2.0763 -0.3689 6.4884 40 1 5.8451 -1.5587 4.8984 41 1 5.6831 -0.5579 6.3798 42 1 6.3163 -3.2690 6.4559 43 1 5.4229 -2.4433 7.7712 44 1 2.4187 -3.0039 5.4271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364000327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:18 Heat of formation + Delta-G solvation = -96.173510 kcal Electronic energy + Delta-G solvation = -26187.073244 eV Core-core repulsion = 22460.168073 eV Total energy + Delta-G solvation = -3726.905171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98098 -37.73982 -36.80482 -36.76859 -35.59402 -34.72988 -31.99283 -31.74652 -30.54185 -27.49598 -26.98008 -26.43394 -25.06781 -24.26678 -21.30787 -20.64142 -19.97749 -18.89745 -17.90677 -17.20732 -16.56066 -16.23081 -16.15874 -15.70391 -15.40303 -15.12744 -14.80610 -14.40105 -14.26873 -13.50332 -13.40100 -13.28412 -13.19566 -12.97340 -12.90366 -12.72386 -12.53556 -12.36971 -12.34364 -11.93099 -11.70041 -11.61342 -11.32335 -11.17484 -11.15174 -11.06347 -10.82461 -10.22845 -10.15520 -10.11723 -10.10285 -9.61676 -9.48244 -9.06844 -8.79587 -8.51786 -6.23254 -4.21148 0.58199 2.32299 2.82765 3.05202 3.21697 3.30654 3.35760 3.89454 3.93221 4.06970 4.22267 4.30156 4.47560 4.51882 4.61559 4.88200 5.04893 5.08403 5.17614 5.22808 5.29783 5.31105 5.40570 5.43528 5.51998 5.54366 5.65312 5.80906 5.92879 6.13920 6.25810 6.37912 6.43417 6.47717 6.63714 6.72152 6.80160 6.83304 7.07868 7.25976 7.57853 7.96047 8.34114 8.79190 9.40399 10.89216 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.003617 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.396399 B = 7739.318629 C = 8186.487054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.054 3.946 3 C -0.181 4.181 4 C -0.509 4.509 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.280 1.280 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.591 3.409 14 O -0.962 6.962 15 O -0.962 6.962 16 N -1.129 6.129 17 C 0.111 3.889 18 C 0.151 3.849 19 C -0.158 4.158 20 C -0.124 4.124 21 C -0.155 4.155 22 C 0.521 3.479 23 O -0.536 6.536 24 N -0.722 5.722 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.266 0.734 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.410 0.590 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 1.501 19.886 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.238 4.238 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.706 3.294 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.689 3.311 14 O -0.952 6.952 15 O -0.951 6.951 16 N -0.886 5.886 17 C -0.016 4.016 18 C 0.062 3.938 19 C -0.217 4.217 20 C -0.162 4.162 21 C -0.195 4.195 22 C 0.307 3.693 23 O -0.412 6.412 24 N -0.378 5.378 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.244 0.756 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.815 1.765 19.861 20.770 hybrid contribution -0.590 0.059 -0.547 0.807 sum 5.225 1.824 19.313 20.091 Atomic orbital electron populations 1.22683 0.97010 1.01330 1.01785 1.18236 0.92521 0.91725 0.92366 1.22818 1.02342 0.97827 1.00812 1.20635 1.34035 1.12602 0.87509 0.90416 1.24967 0.94528 0.97296 0.95792 1.69931 1.47761 1.35783 0.98933 0.87439 0.79801 0.85650 0.76554 1.20782 1.22888 1.17214 1.30368 1.11761 1.13099 1.15465 1.05690 0.74478 0.75248 0.75731 1.93580 1.29298 1.86593 1.85714 1.93547 1.78146 1.37968 1.85488 1.55817 1.13857 1.71269 1.47692 1.21699 0.81007 1.02957 0.95927 1.21240 0.94805 0.82378 0.95345 1.22192 1.02010 0.99584 0.97868 1.22718 0.93267 0.98638 1.01612 1.22358 0.97982 0.96919 1.02282 1.20882 0.85835 0.86225 0.76360 1.90773 1.80257 1.15160 1.55044 1.46393 1.20332 1.10532 1.60505 0.94471 0.91416 0.92339 0.91769 0.92990 0.93210 0.92370 0.85750 0.85419 0.75607 0.88382 0.90581 0.90428 0.91839 0.91524 0.89039 0.88409 0.87779 0.87734 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 6.95 37.16 0.26 -3.48 16 2 C 0.05 1.19 0.52 -155.65 -0.08 1.11 16 3 C -0.18 -3.88 7.22 37.16 0.27 -3.62 16 4 C -0.51 -13.34 8.62 -34.44 -0.30 -13.63 16 5 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 6 C 0.08 2.14 5.31 -17.82 -0.09 2.04 16 7 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 8 Si 0.87 21.10 22.79 -169.99 -3.87 17.22 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.25 -5.55 4.67 56.52 0.26 -5.29 16 12 C -0.57 -9.73 4.99 37.16 0.19 -9.54 16 13 S 2.59 39.81 4.50 -107.50 -0.48 39.32 16 14 O -0.96 -17.43 15.93 -57.54 -0.92 -18.34 16 15 O -0.96 -16.72 15.12 -57.54 -0.87 -17.59 16 16 N -1.13 -11.66 5.29 -10.61 -0.06 -11.71 16 17 C 0.11 0.92 5.21 -4.04 -0.02 0.90 16 18 C 0.15 1.00 0.85 -130.90 -0.11 0.89 16 19 C -0.16 -0.98 8.64 37.16 0.32 -0.66 16 20 C -0.12 -0.60 6.21 -25.09 -0.16 -0.75 16 21 C -0.16 -0.93 6.86 -26.74 -0.18 -1.12 16 22 C 0.52 5.22 8.43 -10.86 -0.09 5.13 16 23 O -0.54 -7.86 18.03 5.56 0.10 -7.76 16 24 N -0.72 -5.90 5.39 -46.61 -0.25 -6.15 16 25 H 0.04 0.76 6.21 -51.93 -0.32 0.43 16 26 H 0.07 1.54 4.32 -51.92 -0.22 1.31 16 27 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.16 2.28 -51.93 -0.12 1.05 16 30 H 0.05 0.99 5.46 -51.93 -0.28 0.71 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.12 1.85 8.14 -51.92 -0.42 1.42 16 33 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 34 H 0.41 3.57 7.26 -34.47 -0.25 3.32 16 35 H 0.10 0.78 7.70 -51.93 -0.40 0.38 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.47 7.16 -51.93 -0.37 0.10 16 40 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 41 H 0.10 0.29 7.89 -51.93 -0.41 -0.12 16 42 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.41 3.27 8.28 -40.82 -0.34 2.93 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -35.48 343.69 -7.02 -42.51 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.62 Total: 5.33 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 0.00 Total: -22.72 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.47 Total: -43.14 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.69 Total: -43.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -3.87 Total: 17.22 kcal Atomic # 16 Polarization: 39.81 SS G_CDS: -0.48 Total: 39.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.48 -7.02 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364000327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.668 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds