Wall clock time and date at job start Tue Mar 31 2020 13:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 C 1.50699 * 109.47727 * 239.99459 * 2 1 3 5 5 H 1.08000 * 120.00369 * 240.84386 * 4 2 1 6 6 C 1.37873 * 119.99683 * 60.83439 * 4 2 1 7 7 N 1.31518 * 120.00483 * 194.57905 * 6 4 2 8 8 Si 1.86801 * 120.00175 * 14.58315 * 6 4 2 9 9 H 1.48504 * 109.47450 * 84.45285 * 8 6 4 10 10 H 1.48501 * 109.47311 * 204.45278 * 8 6 4 11 11 H 1.48496 * 109.47181 * 324.45277 * 8 6 4 12 12 C 1.53006 * 109.46874 * 119.99534 * 2 1 3 13 13 S 1.81400 * 109.47229 * 300.00180 * 12 2 1 14 14 O 1.42104 * 110.54064 * 68.37320 * 13 12 2 15 15 O 1.42109 * 110.54206 * 291.62603 * 13 12 2 16 16 N 1.65594 * 104.44979 * 179.97438 * 13 12 2 17 17 C 1.46496 * 119.99818 * 65.00330 * 16 13 12 18 18 C 1.53008 * 109.47119 * 164.99857 * 17 16 13 19 19 C 1.52998 * 110.21420 * 300.69975 * 18 17 16 20 20 C 1.54479 * 110.24322 * 178.77037 * 18 17 16 21 21 C 1.54637 * 101.76121 * 215.49391 * 20 18 17 22 22 C 1.51283 * 104.19317 * 24.80227 * 21 20 18 23 23 O 1.21275 * 124.93860 * 163.78730 * 22 21 20 24 24 N 1.34411 * 110.11679 * 343.74118 * 22 21 20 25 25 H 1.08999 * 109.47180 * 310.24067 * 1 2 3 26 26 H 1.09008 * 109.46723 * 70.23807 * 1 2 3 27 27 H 1.08994 * 109.47209 * 190.23158 * 1 2 3 28 28 H 1.08998 * 109.47368 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46399 * 299.99627 * 3 2 1 30 30 H 1.09000 * 109.46905 * 59.99017 * 3 2 1 31 31 H 0.96993 * 120.00844 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47226 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.46802 * 59.99984 * 12 2 1 34 34 H 0.97001 * 120.00456 * 244.99835 * 16 13 12 35 35 H 1.08995 * 109.47648 * 44.99700 * 17 16 13 36 36 H 1.08999 * 109.47125 * 284.99730 * 17 16 13 37 37 H 1.09008 * 109.47091 * 298.06497 * 19 18 17 38 38 H 1.09000 * 109.46702 * 178.07248 * 19 18 17 39 39 H 1.08995 * 109.47088 * 58.06935 * 19 18 17 40 40 H 1.08998 * 110.97597 * 333.61000 * 20 18 17 41 41 H 1.09005 * 110.97161 * 97.34442 * 20 18 17 42 42 H 1.09008 * 110.48482 * 143.47735 * 21 20 18 43 43 H 1.08994 * 110.48840 * 266.11663 * 21 20 18 44 44 H 0.97002 * 124.35202 * 179.59569 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6421 -1.5964 -1.1312 6 6 1.7137 -0.2296 -2.4825 7 7 1.8971 -0.9849 -3.5435 8 14 1.0214 1.4950 -2.6724 9 1 2.1372 2.4735 -2.7242 10 1 0.2330 1.5764 -3.9282 11 1 0.1435 1.8060 -1.5158 12 6 2.0400 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8543 15 8 2.0479 1.4103 2.8544 16 7 2.0528 -0.7406 3.9937 17 6 3.5011 -0.7978 4.2061 18 6 3.7899 -1.3342 5.6097 19 6 3.1504 -0.4283 6.6638 20 6 5.3141 -1.4311 5.8417 21 6 5.4200 -2.7043 6.7130 22 6 4.1781 -3.4955 6.3660 23 8 4.0121 -4.6711 6.6131 24 7 3.2853 -2.7057 5.7450 25 1 -0.3633 0.6639 0.7844 26 1 -0.3633 0.3475 -0.9672 27 1 -0.3633 -1.0113 0.1825 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6725 -0.6468 -4.4244 32 1 3.1300 -0.7208 1.2497 33 1 1.6766 -1.7488 1.2494 34 1 1.4556 -1.2149 4.5931 35 1 3.9230 0.2021 4.1054 36 1 3.9512 -1.4584 3.4650 37 1 3.5851 0.5691 6.5977 38 1 3.3343 -0.8398 7.6563 39 1 2.0763 -0.3689 6.4884 40 1 5.8451 -1.5587 4.8984 41 1 5.6831 -0.5579 6.3798 42 1 6.3163 -3.2690 6.4559 43 1 5.4229 -2.4433 7.7712 44 1 2.4187 -3.0039 5.4271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364000327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:17 Heat of formation + Delta-G solvation = -126.016876 kcal Electronic energy + Delta-G solvation = -26188.367349 eV Core-core repulsion = 22460.168073 eV Total energy + Delta-G solvation = -3728.199276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61907 -38.56463 -38.47998 -38.09097 -36.93043 -35.56344 -34.04048 -32.30138 -31.15538 -28.96259 -28.14050 -27.58379 -27.07431 -24.84348 -22.00100 -21.55375 -21.23231 -20.14384 -18.97534 -18.29979 -18.06083 -17.31712 -17.10601 -16.98046 -16.85024 -16.14478 -15.81654 -15.20281 -15.03799 -14.96383 -14.88866 -14.75819 -14.23625 -14.15429 -13.99036 -13.75076 -13.42027 -13.36146 -13.19923 -13.04199 -13.00698 -12.81673 -12.71894 -12.64772 -12.56120 -11.99514 -11.84903 -11.81399 -11.79761 -11.72818 -10.98742 -10.93536 -10.68269 -10.57004 -10.34535 -10.16939 -8.34708 -6.34391 -0.66119 1.30716 1.35522 1.43688 1.58767 1.81328 2.29886 2.37468 2.79060 2.99914 3.26600 3.36905 3.43999 3.75141 3.78844 3.96301 4.06582 4.14150 4.25479 4.39855 4.47282 4.53905 4.61306 4.64177 4.70399 4.75169 4.77698 4.86301 4.92579 4.97263 4.98962 5.15774 5.16634 5.18320 5.36707 5.40155 5.53680 5.63725 5.83897 6.01211 6.05686 6.26324 6.69116 7.23927 7.30324 8.81178 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.003617 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.396399 B = 7739.318629 C = 8186.487054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 C -0.186 4.186 4 C -0.503 4.503 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.918 3.082 9 H -0.273 1.273 10 H -0.308 1.308 11 H -0.221 1.221 12 C -0.587 4.587 13 S 2.622 3.378 14 O -0.989 6.989 15 O -0.976 6.976 16 N -1.113 6.113 17 C 0.098 3.902 18 C 0.152 3.848 19 C -0.160 4.160 20 C -0.117 4.117 21 C -0.148 4.148 22 C 0.510 3.490 23 O -0.593 6.593 24 N -0.718 5.718 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 3.271 22.212 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.242 4.242 4 C -0.542 4.542 5 H 0.066 0.934 6 C -0.174 4.174 7 N -0.576 5.576 8 Si 0.747 3.253 9 H -0.200 1.200 10 H -0.237 1.237 11 H -0.145 1.145 12 C -0.718 4.718 13 S 2.717 3.283 14 O -0.979 6.979 15 O -0.966 6.966 16 N -0.874 5.874 17 C -0.028 4.028 18 C 0.065 3.935 19 C -0.218 4.218 20 C -0.155 4.155 21 C -0.188 4.188 22 C 0.298 3.702 23 O -0.474 6.474 24 N -0.372 5.372 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.659 3.574 22.185 23.438 hybrid contribution -0.814 -0.572 -1.185 1.547 sum 5.846 3.003 21.000 22.004 Atomic orbital electron populations 1.22699 0.97041 1.01994 1.01577 1.18215 0.92588 0.92355 0.92722 1.22833 1.03146 0.97183 1.01081 1.20939 1.32368 1.11533 0.89321 0.93359 1.25694 0.95410 1.00561 0.95722 1.70059 1.50402 1.37679 0.99492 0.86701 0.79860 0.81773 0.76916 1.20006 1.23748 1.14539 1.30414 1.13213 1.13356 1.14826 1.04541 0.73478 0.74826 0.75449 1.93542 1.31292 1.86982 1.86079 1.93525 1.78342 1.39065 1.85687 1.55361 1.15254 1.70849 1.45950 1.22049 0.79318 1.04132 0.97305 1.21370 0.96335 0.81297 0.94537 1.22230 1.01422 1.00150 0.98026 1.22820 0.91567 0.98953 1.02183 1.22400 0.95977 0.96796 1.03613 1.21619 0.87203 0.85732 0.75631 1.90738 1.81556 1.17703 1.57446 1.46527 1.20046 1.11169 1.59480 0.92956 0.92663 0.91982 0.90766 0.94030 0.91491 0.92542 0.83835 0.84693 0.74367 0.87230 0.89607 0.89132 0.91038 0.92525 0.88213 0.85661 0.87079 0.85948 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.44 6.95 71.98 0.50 -6.94 16 2 C 0.04 1.85 0.52 -52.92 -0.03 1.83 16 3 C -0.19 -7.52 7.22 71.98 0.52 -7.00 16 4 C -0.50 -26.46 8.62 25.60 0.22 -26.24 16 5 H 0.05 2.75 7.99 -2.91 -0.02 2.73 16 6 C 0.02 1.38 5.31 84.65 0.45 1.83 16 7 N -0.94 -56.51 13.96 21.45 0.30 -56.22 16 8 Si 0.92 43.13 22.79 68.60 1.56 44.70 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 11 H -0.22 -9.42 4.67 99.48 0.46 -8.96 16 12 C -0.59 -18.78 4.99 71.98 0.36 -18.42 16 13 S 2.62 73.65 4.50 -56.49 -0.25 73.40 16 14 O -0.99 -33.65 15.93 -127.65 -2.03 -35.68 16 15 O -0.98 -30.80 15.12 -127.65 -1.93 -32.73 16 16 N -1.11 -19.90 5.29 -187.49 -0.99 -20.89 16 17 C 0.10 1.30 5.21 86.38 0.45 1.75 16 18 C 0.15 1.55 0.85 4.06 0.00 1.55 16 19 C -0.16 -1.45 8.64 71.98 0.62 -0.83 16 20 C -0.12 -0.66 6.21 31.65 0.20 -0.47 16 21 C -0.15 -1.37 6.86 30.59 0.21 -1.16 16 22 C 0.51 9.62 8.43 87.90 0.74 10.36 16 23 O -0.59 -17.59 18.03 -3.01 -0.05 -17.64 16 24 N -0.72 -10.47 5.39 -419.99 -2.26 -12.74 16 25 H 0.05 2.03 6.21 -2.39 -0.01 2.02 16 26 H 0.05 2.43 4.32 -2.38 -0.01 2.42 16 27 H 0.06 2.51 8.11 -2.39 -0.02 2.49 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.04 1.76 2.28 -2.39 -0.01 1.76 16 30 H 0.07 2.47 5.46 -2.39 -0.01 2.46 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.14 3.93 8.14 -2.39 -0.02 3.92 16 33 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.42 6.28 7.26 -96.74 -0.70 5.58 16 35 H 0.11 1.29 7.70 -2.39 -0.02 1.27 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.64 7.16 -2.39 -0.02 0.62 16 40 H 0.10 0.45 7.91 -2.39 -0.02 0.43 16 41 H 0.13 0.10 7.89 -2.38 -0.02 0.08 16 42 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.41 6.02 8.28 -92.71 -0.77 5.25 16 Total: -1.00 -78.15 343.69 -2.10 -80.25 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.68 Total: 21.29 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 4.24 Total: -43.74 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -2.96 Total: -89.84 kcal Atomic # 8 Polarization: -82.03 SS G_CDS: -4.02 Total: -86.05 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.56 Total: 44.70 kcal Atomic # 16 Polarization: 73.65 SS G_CDS: -0.25 Total: 73.40 kcal Total: -78.15 -2.10 -80.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364000327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.772 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds