Wall clock time and date at job start Tue Mar 31 2020 13:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50701 * 109.46849 * 240.00459 * 2 1 3 5 5 H 1.07998 * 119.99824 * 239.99711 * 4 2 1 6 6 C 1.37881 * 120.00110 * 60.00115 * 4 2 1 7 7 N 1.31515 * 119.99882 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47231 * 120.00037 * 8 6 4 11 11 H 1.48500 * 109.46959 * 239.99757 * 8 6 4 12 12 C 1.52994 * 109.47400 * 120.00589 * 2 1 3 13 13 S 1.81409 * 109.47088 * 299.99805 * 12 2 1 14 14 O 1.42099 * 110.54212 * 68.37265 * 13 12 2 15 15 O 1.42097 * 110.54240 * 291.62867 * 13 12 2 16 16 N 1.65594 * 104.44955 * 179.97438 * 13 12 2 17 17 C 1.47026 * 125.64396 * 90.02711 * 16 13 12 18 18 C 1.54330 * 107.26840 * 178.90120 * 17 16 13 19 19 C 1.55155 * 102.94292 * 337.81024 * 18 17 16 20 20 C 1.52994 * 111.03735 * 153.59095 * 19 18 17 21 21 C 1.50701 * 111.00037 * 277.42577 * 19 18 17 22 22 N 1.34774 * 120.00024 * 292.19339 * 21 19 18 23 23 O 1.21281 * 120.00235 * 112.19951 * 21 19 18 24 24 C 1.47420 * 125.65174 * 269.98068 * 16 13 12 25 25 H 1.09005 * 109.46963 * 299.99847 * 1 2 3 26 26 H 1.08997 * 109.47422 * 59.99461 * 1 2 3 27 27 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47112 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00561 * 3 2 1 30 30 H 1.09005 * 109.47050 * 60.00206 * 3 2 1 31 31 H 0.97000 * 119.99452 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47396 * 180.02562 * 12 2 1 33 33 H 1.09001 * 109.47100 * 59.99556 * 12 2 1 34 34 H 1.08998 * 109.88351 * 298.31719 * 17 16 13 35 35 H 1.08998 * 109.88379 * 59.48509 * 17 16 13 36 36 H 1.08998 * 110.71700 * 96.16950 * 18 17 16 37 37 H 1.08991 * 110.72004 * 219.44241 * 18 17 16 38 38 H 1.09000 * 109.47423 * 307.77896 * 20 19 18 39 39 H 1.09001 * 109.47579 * 67.78446 * 20 19 18 40 40 H 1.09008 * 109.46901 * 187.78254 * 20 19 18 41 41 H 0.97003 * 120.00120 * 0.02562 * 22 21 19 42 42 H 0.97006 * 119.99968 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.36858 * 323.00732 * 24 16 13 44 44 H 1.08999 * 110.36307 * 85.32946 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 3.1463 -2.2869 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0531 -0.7411 3.9935 17 6 3.3483 -0.5039 4.6477 18 6 3.4849 -1.5407 5.7827 19 6 2.0129 -1.9392 6.0684 20 6 1.9294 -3.3517 6.6503 21 6 1.3510 -0.9412 6.9832 22 7 1.7504 -0.8347 8.2660 23 8 0.4588 -0.2340 6.5652 24 6 1.3951 -1.8860 4.6488 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7087 1.1615 -3.4844 32 1 3.1300 -0.7209 1.2493 33 1 1.6767 -1.7490 1.2490 34 1 4.1564 -0.6335 3.9279 35 1 3.3756 0.5042 5.0612 36 1 4.0603 -2.4041 5.4489 37 1 3.9404 -1.0897 6.6641 38 1 2.4733 -4.0427 6.0063 39 1 2.3700 -3.3607 7.6472 40 1 0.8851 -3.6581 6.7119 41 1 2.4642 -1.4001 8.6003 42 1 1.3246 -0.1920 8.8548 43 1 0.3193 -1.7216 4.7092 44 1 1.6091 -2.8074 4.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364828772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:16 Heat of formation + Delta-G solvation = -111.703491 kcal Electronic energy + Delta-G solvation = -26654.446923 eV Core-core repulsion = 22926.868322 eV Total energy + Delta-G solvation = -3727.578601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52902 -37.55093 -36.42471 -36.21335 -35.15740 -34.16143 -32.39552 -31.62477 -29.71210 -26.73389 -26.18752 -25.66689 -25.19598 -23.60868 -22.30898 -19.61779 -19.38506 -18.49585 -17.79420 -17.17892 -16.77427 -15.93147 -15.66699 -15.25413 -14.99256 -14.80917 -14.65682 -13.94696 -13.77219 -13.55794 -13.25316 -13.03750 -12.87651 -12.73204 -12.60061 -12.45839 -12.00183 -11.58118 -11.52480 -11.41000 -11.21256 -11.06568 -11.02174 -10.98821 -10.85186 -10.63825 -10.31347 -10.21813 -10.05205 -9.93058 -9.87145 -9.60822 -9.52192 -8.84483 -8.54104 -8.37609 -6.00464 -4.12465 0.89996 2.48851 3.21460 3.25524 3.26535 3.34736 3.37315 4.04233 4.27220 4.37241 4.43624 4.57851 4.74741 4.87135 5.00510 5.08184 5.23637 5.25465 5.39838 5.47523 5.54370 5.60799 5.70703 5.73055 5.77302 5.86476 5.89565 6.22477 6.42859 6.56853 6.59458 6.74977 6.84734 6.96700 7.10098 7.10252 7.35997 7.54914 7.70862 8.02080 8.11432 8.13586 8.36453 8.86170 9.52682 11.00878 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003718 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.732628 B = 7530.088540 C = 7840.240321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.583 4.583 13 S 2.609 3.391 14 O -0.953 6.953 15 O -0.960 6.960 16 N -1.015 6.015 17 C 0.118 3.882 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.134 4.134 21 C 0.528 3.472 22 N -0.858 5.858 23 O -0.520 6.520 24 C 0.137 3.863 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.401 0.599 43 H 0.095 0.905 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -8.844 20.646 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.717 4.717 13 S 2.709 3.291 14 O -0.943 6.943 15 O -0.951 6.951 16 N -0.851 5.851 17 C -0.008 4.008 18 C -0.153 4.153 19 C -0.103 4.103 20 C -0.192 4.192 21 C 0.312 3.688 22 N -0.422 5.422 23 O -0.394 6.394 24 C 0.011 3.989 25 H 0.047 0.953 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.227 0.773 42 H 0.232 0.768 43 H 0.113 0.887 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.509 20.095 22.088 hybrid contribution 1.001 -1.011 -0.673 1.574 sum 6.265 -8.520 19.422 22.114 Atomic orbital electron populations 1.22270 0.96859 1.00637 1.02354 1.17943 0.92895 0.92227 0.89089 1.22270 0.99648 0.97844 1.02335 1.20981 1.31593 1.12025 0.89381 0.92284 1.24951 0.94926 0.95006 0.98932 1.69821 1.36349 1.22637 1.23331 0.86478 0.78616 0.79598 0.82928 1.19860 1.20948 1.20969 1.30603 1.11154 1.12862 1.17033 1.05324 0.74508 0.74588 0.74672 1.93540 1.28985 1.86338 1.85455 1.93520 1.78338 1.37532 1.85689 1.58857 1.29135 1.47192 1.49917 1.21651 0.85331 0.99164 0.94686 1.22765 0.93815 0.99847 0.98823 1.22000 0.97018 0.95601 0.95700 1.21733 1.03323 0.93140 1.01030 1.20241 0.82677 0.83511 0.82371 1.43837 1.42007 1.44027 1.12364 1.90836 1.29865 1.43741 1.74910 1.21884 0.99074 0.88834 0.89107 0.95325 0.88660 0.94471 0.94523 0.88650 0.95369 0.92815 0.86579 0.86493 0.91163 0.91271 0.89074 0.90012 0.90671 0.91800 0.91433 0.77308 0.76817 0.88671 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 7.77 37.16 0.29 -3.91 16 2 C 0.08 2.03 0.52 -155.66 -0.08 1.95 16 3 C -0.16 -4.18 7.77 37.16 0.29 -3.89 16 4 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.58 9.35 55.43 0.52 -24.06 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.58 -11.97 5.12 37.15 0.19 -11.78 16 13 S 2.61 53.71 4.68 -107.50 -0.50 53.21 16 14 O -0.95 -22.28 14.90 -57.54 -0.86 -23.14 16 15 O -0.96 -22.07 15.22 -57.54 -0.88 -22.94 16 16 N -1.02 -15.97 3.60 -111.42 -0.40 -16.37 16 17 C 0.12 1.45 6.74 -3.06 -0.02 1.42 16 18 C -0.11 -0.89 5.91 -24.89 -0.15 -1.04 16 19 C -0.10 -0.93 0.81 -153.52 -0.12 -1.05 16 20 C -0.13 -0.77 8.57 37.15 0.32 -0.45 16 21 C 0.53 6.16 6.66 -10.99 -0.07 6.08 16 22 N -0.86 -5.79 8.71 31.22 0.27 -5.51 16 23 O -0.52 -9.11 16.59 5.56 0.09 -9.01 16 24 C 0.14 1.80 5.63 -2.53 -0.01 1.79 16 25 H 0.03 0.71 5.46 -51.93 -0.28 0.42 16 26 H 0.09 2.61 6.07 -51.93 -0.32 2.30 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 2.61 6.07 -51.93 -0.32 2.29 16 30 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 33 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.52 7.99 -51.93 -0.42 0.10 16 37 H 0.08 0.47 8.00 -51.93 -0.42 0.05 16 38 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.06 0.22 7.37 -51.93 -0.38 -0.16 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.40 1.29 8.06 -40.82 -0.33 0.96 16 42 H 0.40 2.46 8.93 -40.82 -0.36 2.09 16 43 H 0.10 1.49 6.98 -51.93 -0.36 1.12 16 44 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -37.01 352.17 -8.02 -45.02 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.80 Total: 4.60 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 0.26 Total: -22.94 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.39 Total: -45.95 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -1.64 Total: -55.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.50 Total: 53.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.01 -8.02 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364828772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.682 kcal (2) G-P(sol) polarization free energy of solvation -37.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds