Wall clock time and date at job start Tue Mar 31 2020 13:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50701 * 109.46849 * 240.00459 * 2 1 3 5 5 H 1.07998 * 119.99824 * 239.99711 * 4 2 1 6 6 C 1.37881 * 120.00110 * 60.00115 * 4 2 1 7 7 N 1.31515 * 119.99882 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47231 * 120.00037 * 8 6 4 11 11 H 1.48500 * 109.46959 * 239.99757 * 8 6 4 12 12 C 1.52994 * 109.47400 * 120.00589 * 2 1 3 13 13 S 1.81409 * 109.47088 * 299.99805 * 12 2 1 14 14 O 1.42099 * 110.54212 * 68.37265 * 13 12 2 15 15 O 1.42097 * 110.54240 * 291.62867 * 13 12 2 16 16 N 1.65594 * 104.44955 * 179.97438 * 13 12 2 17 17 C 1.47026 * 125.64396 * 90.02711 * 16 13 12 18 18 C 1.54330 * 107.26840 * 178.90120 * 17 16 13 19 19 C 1.55155 * 102.94292 * 337.81024 * 18 17 16 20 20 C 1.52994 * 111.03735 * 153.59095 * 19 18 17 21 21 C 1.50701 * 111.00037 * 277.42577 * 19 18 17 22 22 N 1.34774 * 120.00024 * 292.19339 * 21 19 18 23 23 O 1.21281 * 120.00235 * 112.19951 * 21 19 18 24 24 C 1.47420 * 125.65174 * 269.98068 * 16 13 12 25 25 H 1.09005 * 109.46963 * 299.99847 * 1 2 3 26 26 H 1.08997 * 109.47422 * 59.99461 * 1 2 3 27 27 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47112 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00561 * 3 2 1 30 30 H 1.09005 * 109.47050 * 60.00206 * 3 2 1 31 31 H 0.97000 * 119.99452 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47396 * 180.02562 * 12 2 1 33 33 H 1.09001 * 109.47100 * 59.99556 * 12 2 1 34 34 H 1.08998 * 109.88351 * 298.31719 * 17 16 13 35 35 H 1.08998 * 109.88379 * 59.48509 * 17 16 13 36 36 H 1.08998 * 110.71700 * 96.16950 * 18 17 16 37 37 H 1.08991 * 110.72004 * 219.44241 * 18 17 16 38 38 H 1.09000 * 109.47423 * 307.77896 * 20 19 18 39 39 H 1.09001 * 109.47579 * 67.78446 * 20 19 18 40 40 H 1.09008 * 109.46901 * 187.78254 * 20 19 18 41 41 H 0.97003 * 120.00120 * 0.02562 * 22 21 19 42 42 H 0.97006 * 119.99968 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.36858 * 323.00732 * 24 16 13 44 44 H 1.08999 * 110.36307 * 85.32946 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 3.1463 -2.2869 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0531 -0.7411 3.9935 17 6 3.3483 -0.5039 4.6477 18 6 3.4849 -1.5407 5.7827 19 6 2.0129 -1.9392 6.0684 20 6 1.9294 -3.3517 6.6503 21 6 1.3510 -0.9412 6.9832 22 7 1.7504 -0.8347 8.2660 23 8 0.4588 -0.2340 6.5652 24 6 1.3951 -1.8860 4.6488 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7087 1.1615 -3.4844 32 1 3.1300 -0.7209 1.2493 33 1 1.6767 -1.7490 1.2490 34 1 4.1564 -0.6335 3.9279 35 1 3.3756 0.5042 5.0612 36 1 4.0603 -2.4041 5.4489 37 1 3.9404 -1.0897 6.6641 38 1 2.4733 -4.0427 6.0063 39 1 2.3700 -3.3607 7.6472 40 1 0.8851 -3.6581 6.7119 41 1 2.4642 -1.4001 8.6003 42 1 1.3246 -0.1920 8.8548 43 1 0.3193 -1.7216 4.7092 44 1 1.6091 -2.8074 4.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364828772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:15 Heat of formation + Delta-G solvation = -142.100843 kcal Electronic energy + Delta-G solvation = -26655.765051 eV Core-core repulsion = 22926.868322 eV Total energy + Delta-G solvation = -3728.896729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38966 -38.53373 -38.15089 -38.13918 -36.89341 -35.02215 -33.64823 -33.18606 -30.55531 -28.41124 -27.73872 -27.27206 -27.01321 -24.45898 -23.23382 -21.32069 -20.39173 -19.89822 -18.92842 -18.39381 -17.87820 -17.63884 -17.01489 -16.79190 -16.66408 -16.11138 -15.71584 -15.14232 -14.92637 -14.75274 -14.53268 -14.46096 -14.36220 -13.95131 -13.81316 -13.71871 -13.22797 -13.14612 -13.07276 -12.91028 -12.76989 -12.57805 -12.53813 -12.33256 -12.22876 -12.10610 -12.00879 -11.96133 -11.71592 -11.60666 -11.40115 -10.82795 -10.65494 -10.63751 -10.43866 -9.87677 -8.03705 -6.23181 -0.68812 1.43916 1.46097 1.56551 1.64303 1.82182 2.44220 2.56357 2.94726 3.07968 3.18977 3.32544 3.63835 3.86084 3.99075 4.10074 4.18948 4.31361 4.40626 4.54850 4.56428 4.74958 4.75948 4.80170 4.82289 4.83703 4.95051 4.99160 5.03653 5.07647 5.11304 5.18865 5.34206 5.36787 5.44642 5.54792 5.62861 5.91823 5.91970 6.07798 6.31107 6.50118 6.81808 7.40024 7.45299 8.96818 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003718 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.732628 B = 7530.088540 C = 7840.240321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.910 5.910 8 Si 0.960 3.040 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.578 4.578 13 S 2.619 3.381 14 O -0.992 6.992 15 O -0.994 6.994 16 N -1.015 6.015 17 C 0.098 3.902 18 C -0.098 4.098 19 C -0.091 4.091 20 C -0.130 4.130 21 C 0.519 3.481 22 N -0.832 5.832 23 O -0.593 6.593 24 C 0.121 3.879 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.420 0.580 42 H 0.406 0.594 43 H 0.058 0.942 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 -11.895 22.256 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.549 5.549 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.711 4.711 13 S 2.720 3.280 14 O -0.982 6.982 15 O -0.984 6.984 16 N -0.853 5.853 17 C -0.026 4.026 18 C -0.137 4.137 19 C -0.097 4.097 20 C -0.187 4.187 21 C 0.304 3.696 22 N -0.397 5.397 23 O -0.473 6.473 24 C -0.004 4.004 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.252 0.748 42 H 0.237 0.763 43 H 0.077 0.923 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.125 -10.584 21.759 25.524 hybrid contribution 0.126 -0.047 -1.061 1.069 sum 8.251 -10.631 20.698 24.688 Atomic orbital electron populations 1.22203 0.97952 1.00479 1.01064 1.17957 0.92234 0.92186 0.91085 1.22198 0.99912 0.98463 1.01079 1.21304 1.31678 1.12331 0.90109 0.91492 1.25749 0.95127 0.95666 1.01894 1.69970 1.37233 1.23854 1.23847 0.85482 0.78015 0.78726 0.79251 1.18608 1.20987 1.20931 1.30470 1.12552 1.13267 1.14805 1.04576 0.73617 0.74388 0.75469 1.93483 1.31626 1.86895 1.86225 1.93463 1.78617 1.39945 1.86405 1.58395 1.30758 1.47597 1.48597 1.22074 0.83969 0.99916 0.96670 1.22871 0.92911 0.99844 0.98034 1.22033 0.97306 0.97292 0.93026 1.21800 1.03551 0.90458 1.02940 1.20813 0.81891 0.83135 0.83745 1.43639 1.41640 1.43571 1.10811 1.90818 1.33251 1.46701 1.76499 1.22239 0.97336 0.88800 0.92033 0.95575 0.90936 0.93987 0.93855 0.90949 0.95543 0.92916 0.84240 0.84384 0.89250 0.93409 0.85329 0.87281 0.88500 0.88705 0.92370 0.74776 0.76326 0.92347 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.41 7.77 71.98 0.56 -7.85 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -8.31 7.77 71.98 0.56 -7.75 16 4 C -0.52 -27.29 8.01 25.60 0.21 -27.09 16 5 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 6 C 0.01 0.80 5.15 84.66 0.44 1.23 16 7 N -0.91 -51.65 9.35 21.45 0.20 -51.45 16 8 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C -0.58 -23.21 5.12 71.98 0.37 -22.84 16 13 S 2.62 109.80 4.68 -56.49 -0.26 109.54 16 14 O -0.99 -48.52 14.90 -127.65 -1.90 -50.42 16 15 O -0.99 -47.09 15.22 -127.65 -1.94 -49.04 16 16 N -1.01 -31.22 3.60 -506.43 -1.82 -33.04 16 17 C 0.10 2.21 6.74 86.73 0.58 2.80 16 18 C -0.10 -1.09 5.91 31.78 0.19 -0.91 16 19 C -0.09 -1.47 0.81 -51.54 -0.04 -1.51 16 20 C -0.13 -0.90 8.57 71.98 0.62 -0.29 16 21 C 0.52 11.50 6.66 87.66 0.58 12.09 16 22 N -0.83 -9.16 8.71 -173.53 -1.51 -10.67 16 23 O -0.59 -21.61 16.59 -3.03 -0.05 -21.66 16 24 C 0.12 3.03 5.63 86.86 0.49 3.52 16 25 H 0.03 1.35 5.46 -2.38 -0.01 1.34 16 26 H 0.07 4.13 6.07 -2.39 -0.01 4.12 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 4.10 6.07 -2.39 -0.01 4.08 16 30 H 0.03 1.35 5.46 -2.38 -0.01 1.34 16 31 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 33 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.13 0.59 7.99 -2.39 -0.02 0.57 16 37 H 0.11 0.67 8.00 -2.39 -0.02 0.65 16 38 H 0.10 0.33 8.08 -2.39 -0.02 0.31 16 39 H 0.09 0.10 7.37 -2.39 -0.02 0.08 16 40 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.42 0.94 8.06 -92.71 -0.75 0.19 16 42 H 0.41 4.28 8.93 -92.70 -0.83 3.45 16 43 H 0.06 1.90 6.98 -2.39 -0.02 1.88 16 44 H 0.11 1.91 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -86.05 352.17 -1.30 -87.35 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.55 Total: 20.12 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 4.52 Total: -45.20 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -3.14 Total: -95.16 kcal Atomic # 8 Polarization: -117.22 SS G_CDS: -3.90 Total: -121.11 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 109.80 SS G_CDS: -0.26 Total: 109.54 kcal Total: -86.05 -1.30 -87.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364828772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.752 kcal (2) G-P(sol) polarization free energy of solvation -86.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds