Wall clock time and date at job start Tue Mar 31 2020 13:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47649 * 2 1 4 4 C 1.50704 * 109.47525 * 240.00043 * 2 1 3 5 5 H 1.08001 * 119.99748 * 240.00986 * 4 2 1 6 6 C 1.37875 * 119.99882 * 59.99559 * 4 2 1 7 7 N 1.31512 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47179 * 60.00767 * 8 6 4 10 10 H 1.48501 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47453 * 300.00652 * 8 6 4 12 12 C 1.53007 * 109.46902 * 120.00171 * 2 1 3 13 13 S 1.81397 * 109.46949 * 299.99822 * 12 2 1 14 14 O 1.42094 * 110.54255 * 68.37435 * 13 12 2 15 15 O 1.42104 * 110.54329 * 291.62474 * 13 12 2 16 16 N 1.65596 * 104.44950 * 180.02562 * 13 12 2 17 17 C 1.47031 * 125.64887 * 90.02465 * 16 13 12 18 18 C 1.54327 * 107.26879 * 181.03879 * 17 16 13 19 19 C 1.55156 * 102.94181 * 22.19441 * 18 17 16 20 20 C 1.53004 * 111.00038 * 206.38478 * 19 18 17 21 21 C 1.50701 * 111.00528 * 82.57399 * 19 18 17 22 22 N 1.34776 * 120.00211 * 61.45000 * 21 19 18 23 23 O 1.21278 * 119.99514 * 241.45125 * 21 19 18 24 24 C 1.47422 * 125.64976 * 270.00019 * 16 13 12 25 25 H 1.08997 * 109.47274 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.46919 * 60.00044 * 1 2 3 27 27 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47425 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47175 * 300.00439 * 3 2 1 30 30 H 1.09006 * 109.46848 * 59.99572 * 3 2 1 31 31 H 0.97003 * 119.99923 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46718 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47173 * 60.00218 * 12 2 1 34 34 H 1.08998 * 109.88059 * 61.62244 * 17 16 13 35 35 H 1.08994 * 109.87878 * 300.45524 * 17 16 13 36 36 H 1.09001 * 110.71763 * 140.55775 * 18 17 16 37 37 H 1.08997 * 110.71798 * 263.82943 * 18 17 16 38 38 H 1.08996 * 109.47322 * 58.54621 * 20 19 18 39 39 H 1.08997 * 109.46941 * 178.55201 * 20 19 18 40 40 H 1.09000 * 109.47049 * 298.54559 * 20 19 18 41 41 H 0.97001 * 119.99992 * 0.02562 * 22 21 19 42 42 H 0.96993 * 120.00004 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.36378 * 37.05474 * 24 16 13 44 44 H 1.09001 * 110.46274 * 274.77650 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1338 2.7304 14 8 0.0279 -0.0183 2.8543 15 8 2.0479 1.4100 2.8544 16 7 2.0539 -0.7401 3.9936 17 6 3.3492 -0.5018 4.6473 18 6 3.5110 -1.5723 5.7471 19 6 2.5551 -2.7005 5.2773 20 6 2.0618 -3.5308 6.4640 21 6 3.2193 -3.5773 4.2472 22 7 4.3312 -4.2686 4.5666 23 8 2.7532 -3.6607 3.1306 24 6 1.3971 -1.8854 4.6493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1617 -3.4844 32 1 3.1299 -0.7209 1.2495 33 1 1.6766 -1.7490 1.2492 34 1 3.3619 0.4927 5.0933 35 1 4.1546 -0.5941 3.9188 36 1 4.5397 -1.9306 5.7881 37 1 3.1991 -1.1808 6.7153 38 1 1.5484 -2.8817 7.1732 39 1 1.3736 -4.2981 6.1094 40 1 2.9122 -4.0043 6.9546 41 1 4.7038 -4.2021 5.4598 42 1 4.7589 -4.8326 3.9035 43 1 0.8637 -2.4884 3.9145 44 1 0.7127 -1.5398 5.4241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364828773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:21 Heat of formation + Delta-G solvation = -111.929610 kcal Electronic energy + Delta-G solvation = -26949.719036 eV Core-core repulsion = 23222.130630 eV Total energy + Delta-G solvation = -3727.588406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53396 -37.55989 -36.45850 -36.15516 -35.20306 -34.12297 -32.42874 -31.55800 -29.71499 -26.63775 -26.20827 -25.62642 -25.12969 -23.59470 -22.32742 -19.60802 -19.33215 -18.49471 -17.81696 -17.17860 -16.74184 -15.87136 -15.64094 -15.29503 -15.03126 -14.78566 -14.58495 -13.92662 -13.79899 -13.58118 -13.13534 -13.04456 -12.87656 -12.73656 -12.57951 -12.40006 -12.01584 -11.58640 -11.53078 -11.42004 -11.25564 -11.05072 -10.97950 -10.95855 -10.84244 -10.58358 -10.31368 -10.18936 -10.00433 -9.92557 -9.84972 -9.55188 -9.47308 -8.84193 -8.50354 -8.31356 -5.94473 -4.05410 0.93088 2.49718 3.19587 3.26934 3.33510 3.37816 3.40781 4.01121 4.26637 4.40208 4.45261 4.54810 4.74740 4.88249 4.98643 5.08931 5.23291 5.30523 5.38616 5.45848 5.55211 5.65262 5.75888 5.77894 5.83795 5.85424 5.89334 6.21948 6.53793 6.56849 6.60117 6.83561 6.89545 6.99933 7.11732 7.12901 7.41210 7.59979 7.76993 8.06543 8.11942 8.19393 8.43258 8.93012 9.59062 11.06945 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.004658 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.534602 B = 6009.790801 C = 6898.151171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.162 4.162 4 C -0.497 4.497 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.573 4.573 13 S 2.608 3.392 14 O -0.960 6.960 15 O -0.963 6.963 16 N -1.016 6.016 17 C 0.118 3.882 18 C -0.114 4.114 19 C -0.101 4.101 20 C -0.133 4.133 21 C 0.529 3.471 22 N -0.857 5.857 23 O -0.521 6.521 24 C 0.144 3.856 25 H 0.026 0.974 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.402 0.598 43 H 0.088 0.912 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 -8.731 20.427 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 C -0.220 4.220 4 C -0.537 4.537 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 C -0.707 4.707 13 S 2.708 3.292 14 O -0.951 6.951 15 O -0.954 6.954 16 N -0.852 5.852 17 C -0.008 4.008 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.191 4.191 21 C 0.313 3.687 22 N -0.421 5.421 23 O -0.395 6.395 24 C 0.018 3.982 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.227 0.773 42 H 0.233 0.767 43 H 0.107 0.893 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.781 -7.689 19.663 21.890 hybrid contribution 1.259 -1.311 -0.974 2.062 sum 7.040 -9.000 18.689 21.905 Atomic orbital electron populations 1.22262 0.96959 1.00653 1.02157 1.17940 0.92811 0.92102 0.89257 1.22269 0.99624 0.97913 1.02198 1.20924 1.31456 1.11927 0.89365 0.92368 1.24930 0.94979 0.95019 0.98841 1.69798 1.36524 1.22667 1.23428 0.86598 0.79096 0.79765 0.82161 1.20282 1.21221 1.20353 1.30484 1.10962 1.13200 1.16095 1.05358 0.74427 0.74485 0.74922 1.93527 1.29278 1.86588 1.85699 1.93522 1.78339 1.37734 1.85771 1.58902 1.29385 1.46899 1.50021 1.21653 0.85315 0.99122 0.94717 1.22772 0.99175 0.94051 0.99333 1.22046 0.97484 0.95414 0.95673 1.21704 1.01751 0.99909 0.95730 1.20209 0.80420 0.79522 0.88540 1.43818 1.29971 1.50583 1.17703 1.90823 1.63348 1.63433 1.21899 1.21815 0.93036 0.85910 0.97437 0.95496 0.88688 0.94434 0.94585 0.88659 0.95503 0.92797 0.86852 0.85840 0.90611 0.91816 0.89945 0.89186 0.90735 0.91494 0.91710 0.77332 0.76678 0.89347 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 7.78 37.15 0.29 -3.98 16 2 C 0.08 2.12 0.52 -155.66 -0.08 2.04 16 3 C -0.16 -4.22 7.78 37.16 0.29 -3.93 16 4 C -0.50 -13.91 8.01 -34.44 -0.28 -14.18 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.89 -25.12 9.35 55.43 0.52 -24.60 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.57 -12.74 5.12 37.16 0.19 -12.55 16 13 S 2.61 53.65 4.68 -107.50 -0.50 53.15 16 14 O -0.96 -21.80 15.23 -57.54 -0.88 -22.67 16 15 O -0.96 -21.54 15.22 -57.54 -0.88 -22.42 16 16 N -1.02 -15.90 3.60 -111.42 -0.40 -16.30 16 17 C 0.12 1.43 6.74 -3.06 -0.02 1.40 16 18 C -0.11 -0.88 5.90 -24.90 -0.15 -1.02 16 19 C -0.10 -0.94 0.79 -153.51 -0.12 -1.06 16 20 C -0.13 -0.78 8.61 37.16 0.32 -0.46 16 21 C 0.53 5.94 6.67 -10.98 -0.07 5.87 16 22 N -0.86 -5.79 8.61 31.22 0.27 -5.52 16 23 O -0.52 -8.61 16.55 5.56 0.09 -8.52 16 24 C 0.14 1.89 5.51 -2.53 -0.01 1.88 16 25 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 26 H 0.09 2.64 6.07 -51.93 -0.32 2.33 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 2.64 6.07 -51.93 -0.32 2.32 16 30 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 32 H 0.11 2.37 8.14 -51.92 -0.42 1.94 16 33 H 0.12 2.72 8.14 -51.92 -0.42 2.29 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.44 7.55 -51.93 -0.39 0.04 16 37 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 38 H 0.07 0.37 8.10 -51.93 -0.42 -0.06 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.23 7.92 -51.93 -0.41 -0.18 16 41 H 0.40 1.32 8.30 -40.82 -0.34 0.98 16 42 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 43 H 0.09 1.31 7.36 -51.93 -0.38 0.93 16 44 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -36.26 353.00 -8.06 -44.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.84 Total: 5.00 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 0.26 Total: -24.32 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.39 Total: -46.42 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.66 Total: -53.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.50 Total: 53.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.26 -8.06 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364828773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.610 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds