Wall clock time and date at job start Tue Mar 31 2020 13:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47649 * 2 1 4 4 C 1.50704 * 109.47525 * 240.00043 * 2 1 3 5 5 H 1.08001 * 119.99748 * 240.00986 * 4 2 1 6 6 C 1.37875 * 119.99882 * 59.99559 * 4 2 1 7 7 N 1.31512 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47179 * 60.00767 * 8 6 4 10 10 H 1.48501 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47453 * 300.00652 * 8 6 4 12 12 C 1.53007 * 109.46902 * 120.00171 * 2 1 3 13 13 S 1.81397 * 109.46949 * 299.99822 * 12 2 1 14 14 O 1.42094 * 110.54255 * 68.37435 * 13 12 2 15 15 O 1.42104 * 110.54329 * 291.62474 * 13 12 2 16 16 N 1.65596 * 104.44950 * 180.02562 * 13 12 2 17 17 C 1.47031 * 125.64887 * 90.02465 * 16 13 12 18 18 C 1.54327 * 107.26879 * 181.03879 * 17 16 13 19 19 C 1.55156 * 102.94181 * 22.19441 * 18 17 16 20 20 C 1.53004 * 111.00038 * 206.38478 * 19 18 17 21 21 C 1.50701 * 111.00528 * 82.57399 * 19 18 17 22 22 N 1.34776 * 120.00211 * 61.45000 * 21 19 18 23 23 O 1.21278 * 119.99514 * 241.45125 * 21 19 18 24 24 C 1.47422 * 125.64976 * 270.00019 * 16 13 12 25 25 H 1.08997 * 109.47274 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.46919 * 60.00044 * 1 2 3 27 27 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47425 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47175 * 300.00439 * 3 2 1 30 30 H 1.09006 * 109.46848 * 59.99572 * 3 2 1 31 31 H 0.97003 * 119.99923 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46718 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47173 * 60.00218 * 12 2 1 34 34 H 1.08998 * 109.88059 * 61.62244 * 17 16 13 35 35 H 1.08994 * 109.87878 * 300.45524 * 17 16 13 36 36 H 1.09001 * 110.71763 * 140.55775 * 18 17 16 37 37 H 1.08997 * 110.71798 * 263.82943 * 18 17 16 38 38 H 1.08996 * 109.47322 * 58.54621 * 20 19 18 39 39 H 1.08997 * 109.46941 * 178.55201 * 20 19 18 40 40 H 1.09000 * 109.47049 * 298.54559 * 20 19 18 41 41 H 0.97001 * 119.99992 * 0.02562 * 22 21 19 42 42 H 0.96993 * 120.00004 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.36378 * 37.05474 * 24 16 13 44 44 H 1.09001 * 110.46274 * 274.77650 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0078 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1338 2.7304 14 8 0.0279 -0.0183 2.8543 15 8 2.0479 1.4100 2.8544 16 7 2.0539 -0.7401 3.9936 17 6 3.3492 -0.5018 4.6473 18 6 3.5110 -1.5723 5.7471 19 6 2.5551 -2.7005 5.2773 20 6 2.0618 -3.5308 6.4640 21 6 3.2193 -3.5773 4.2472 22 7 4.3312 -4.2686 4.5666 23 8 2.7532 -3.6607 3.1306 24 6 1.3971 -1.8854 4.6493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1617 -3.4844 32 1 3.1299 -0.7209 1.2495 33 1 1.6766 -1.7490 1.2492 34 1 3.3619 0.4927 5.0933 35 1 4.1546 -0.5941 3.9188 36 1 4.5397 -1.9306 5.7881 37 1 3.1991 -1.1808 6.7153 38 1 1.5484 -2.8817 7.1732 39 1 1.3736 -4.2981 6.1094 40 1 2.9122 -4.0043 6.9546 41 1 4.7038 -4.2021 5.4598 42 1 4.7589 -4.8326 3.9035 43 1 0.8637 -2.4884 3.9145 44 1 0.7127 -1.5398 5.4241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364828773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:20 Heat of formation + Delta-G solvation = -141.209047 kcal Electronic energy + Delta-G solvation = -26950.988688 eV Core-core repulsion = 23222.130630 eV Total energy + Delta-G solvation = -3728.858058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38150 -38.53871 -38.19432 -38.15650 -36.96661 -34.96316 -33.68024 -33.21861 -30.56993 -28.40502 -27.75626 -27.30298 -27.05966 -24.43739 -23.25957 -21.32659 -20.36387 -19.94612 -18.99108 -18.36728 -17.90988 -17.62067 -17.01821 -16.83979 -16.67092 -16.18471 -15.64910 -15.16988 -14.92172 -14.79625 -14.55080 -14.47731 -14.40169 -13.93639 -13.91346 -13.72439 -13.26246 -13.14794 -13.10886 -12.91801 -12.85550 -12.59397 -12.55564 -12.36514 -12.23726 -12.17911 -12.04297 -12.02287 -11.72709 -11.63486 -11.41445 -10.79585 -10.71253 -10.58896 -10.45400 -9.92218 -8.06619 -6.25469 -0.69987 1.40530 1.41897 1.49700 1.68302 1.75522 2.41191 2.58167 2.81462 3.03647 3.14911 3.30762 3.61512 3.86149 3.99540 4.08449 4.17211 4.28280 4.40341 4.48059 4.54063 4.71950 4.74957 4.79447 4.81550 4.82947 4.91881 4.97801 5.00948 5.05298 5.08602 5.17378 5.31568 5.34737 5.42567 5.50527 5.59096 5.91239 5.95346 6.05923 6.30561 6.53181 6.77045 7.41946 7.42784 8.93432 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.004658 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.534602 B = 6009.790801 C = 6898.151171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 C -0.155 4.155 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.906 5.906 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.271 1.271 12 C -0.579 4.579 13 S 2.632 3.368 14 O -0.986 6.986 15 O -0.982 6.982 16 N -1.014 6.014 17 C 0.098 3.902 18 C -0.099 4.099 19 C -0.092 4.092 20 C -0.129 4.129 21 C 0.522 3.478 22 N -0.833 5.833 23 O -0.587 6.587 24 C 0.127 3.873 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.419 0.581 42 H 0.406 0.594 43 H 0.061 0.939 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -9.928 23.118 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.067 3.933 3 C -0.213 4.213 4 C -0.560 4.560 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.545 5.545 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.197 1.197 12 C -0.711 4.711 13 S 2.730 3.270 14 O -0.976 6.976 15 O -0.973 6.973 16 N -0.853 5.853 17 C -0.027 4.027 18 C -0.138 4.138 19 C -0.097 4.097 20 C -0.187 4.187 21 C 0.307 3.693 22 N -0.397 5.397 23 O -0.466 6.466 24 C 0.002 3.998 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.251 0.749 42 H 0.237 0.763 43 H 0.079 0.921 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.608 -8.903 22.382 25.261 hybrid contribution 0.740 -0.982 -1.712 2.108 sum 8.348 -9.885 20.670 24.386 Atomic orbital electron populations 1.22176 0.97645 1.00165 1.01450 1.17948 0.92422 0.92299 0.90678 1.22168 0.99687 0.98000 1.01460 1.21189 1.31935 1.12161 0.90700 0.92937 1.25671 0.95077 0.95685 1.01544 1.69920 1.36953 1.23507 1.24071 0.85642 0.78773 0.78626 0.78764 1.20050 1.20504 1.19667 1.30434 1.11398 1.12767 1.16509 1.04239 0.73695 0.74138 0.74893 1.93481 1.31055 1.87027 1.86086 1.93483 1.78592 1.39117 1.86097 1.58474 1.31167 1.47347 1.48327 1.22102 0.83205 1.01399 0.95972 1.22873 1.00664 0.91522 0.98712 1.22032 0.96174 0.95574 0.95919 1.21769 1.03010 0.99547 0.94377 1.20671 0.80965 0.79672 0.88021 1.43636 1.28301 1.48917 1.18859 1.90809 1.65351 1.65831 1.24587 1.22161 0.94976 0.85402 0.97243 0.94901 0.90553 0.94751 0.94275 0.90612 0.94900 0.92682 0.86137 0.86409 0.90046 0.92238 0.86720 0.86018 0.89044 0.92472 0.88443 0.74869 0.76287 0.92073 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.54 7.78 71.98 0.56 -7.98 16 2 C 0.07 3.69 0.52 -52.93 -0.03 3.66 16 3 C -0.16 -8.31 7.78 71.98 0.56 -7.75 16 4 C -0.52 -29.86 8.01 25.60 0.21 -29.66 16 5 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 6 C 0.02 1.11 5.15 84.65 0.44 1.55 16 7 N -0.91 -52.49 9.35 21.45 0.20 -52.29 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 C -0.58 -26.60 5.12 71.98 0.37 -26.23 16 13 S 2.63 109.96 4.68 -56.49 -0.26 109.70 16 14 O -0.99 -45.74 15.23 -127.65 -1.94 -47.68 16 15 O -0.98 -44.17 15.22 -127.65 -1.94 -46.11 16 16 N -1.01 -31.08 3.60 -506.42 -1.82 -32.90 16 17 C 0.10 2.16 6.74 86.73 0.58 2.74 16 18 C -0.10 -1.08 5.90 31.78 0.19 -0.89 16 19 C -0.09 -1.44 0.79 -51.53 -0.04 -1.48 16 20 C -0.13 -0.98 8.61 71.98 0.62 -0.36 16 21 C 0.52 10.85 6.67 87.66 0.58 11.43 16 22 N -0.83 -8.84 8.61 -173.53 -1.49 -10.33 16 23 O -0.59 -19.72 16.55 -3.02 -0.05 -19.77 16 24 C 0.13 3.22 5.51 86.86 0.48 3.70 16 25 H 0.03 1.70 5.46 -2.39 -0.01 1.69 16 26 H 0.08 4.41 6.07 -2.39 -0.01 4.40 16 27 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 4.32 6.07 -2.39 -0.01 4.31 16 30 H 0.03 1.67 5.46 -2.38 -0.01 1.65 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.12 5.20 8.14 -2.39 -0.02 5.18 16 33 H 0.12 5.47 8.14 -2.39 -0.02 5.45 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 0.56 7.55 -2.39 -0.02 0.55 16 37 H 0.12 0.67 8.04 -2.39 -0.02 0.65 16 38 H 0.09 0.45 8.10 -2.39 -0.02 0.43 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 0.14 7.92 -2.39 -0.02 0.12 16 41 H 0.42 0.86 8.30 -92.71 -0.77 0.09 16 42 H 0.41 4.31 8.93 -92.71 -0.83 3.48 16 43 H 0.06 1.88 7.36 -2.39 -0.02 1.86 16 44 H 0.10 2.02 8.01 -2.39 -0.02 2.00 16 Total: -1.00 -82.27 353.00 -1.35 -83.62 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.57 Total: 20.30 kcal Atomic # 6 Polarization: -55.78 SS G_CDS: 4.52 Total: -51.26 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.12 Total: -95.52 kcal Atomic # 8 Polarization: -109.63 SS G_CDS: -3.94 Total: -113.57 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 109.96 SS G_CDS: -0.26 Total: 109.70 kcal Total: -82.27 -1.35 -83.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364828773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.587 kcal (2) G-P(sol) polarization free energy of solvation -82.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds