Wall clock time and date at job start Tue Mar 31 2020 12:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47087 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47026 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47037 * 149.99923 * 3 2 1 7 7 C 1.38655 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99569 * 359.97438 * 7 2 1 9 9 O 1.34821 * 120.00085 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00361 * 174.97177 * 9 7 2 11 11 C 1.38949 * 120.03954 * 185.37551 * 10 9 7 12 12 C 1.38119 * 120.07069 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.14254 * 0.04509 * 12 11 10 14 14 C 1.38916 * 120.06514 * 359.97438 * 13 12 11 15 15 N 1.39939 * 120.03588 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00219 * 35.13030 * 15 14 13 17 17 O 1.21591 * 119.99693 * 355.49911 * 16 15 14 18 18 N 1.34773 * 120.00410 * 175.50176 * 16 15 14 19 19 C 1.47813 * 134.38382 * 179.97438 * 18 16 15 20 20 C 1.52706 * 85.72326 * 156.25901 * 19 18 16 21 21 C 1.47824 * 134.37635 * 359.97438 * 18 16 15 22 22 C 1.53379 * 115.97934 * 140.75438 * 20 19 18 23 23 C 1.54778 * 103.72387 * 129.44650 * 22 20 19 24 24 O 1.44529 * 104.87705 * 23.69900 * 23 22 20 25 25 C 1.44708 * 105.50940 * 320.24753 * 24 23 22 26 26 C 1.38739 * 120.03154 * 5.67605 * 10 9 7 27 27 H 0.96999 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.96161 * 0.02655 * 11 10 9 29 29 H 1.08005 * 119.92662 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.96923 * 180.02562 * 13 12 11 31 31 H 0.97002 * 120.00230 * 215.12745 * 15 14 13 32 32 H 1.08999 * 113.83570 * 42.05859 * 19 18 16 33 33 H 1.08998 * 113.83587 * 270.46065 * 19 18 16 34 34 H 1.09000 * 113.83527 * 89.54161 * 21 18 16 35 35 H 1.09003 * 113.83193 * 317.93753 * 21 18 16 36 36 H 1.08992 * 110.59933 * 10.83919 * 22 20 19 37 37 H 1.09000 * 110.59497 * 248.04644 * 22 20 19 38 38 H 1.08996 * 110.35585 * 142.55181 * 23 22 20 39 39 H 1.09002 * 110.35544 * 264.84543 * 23 22 20 40 40 H 1.09005 * 110.42590 * 158.10199 * 25 24 23 41 41 H 1.09002 * 110.42970 * 280.58762 * 25 24 23 42 42 H 1.08001 * 120.06470 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9735 -2.4057 0.1044 11 6 5.3564 -2.4716 0.2228 12 6 5.9843 -3.6971 0.3297 13 6 5.2400 -4.8615 0.3183 14 6 3.8571 -4.8024 0.1998 15 7 3.1041 -5.9818 0.1878 16 6 3.4860 -7.0329 0.9401 17 8 4.5279 -6.9865 1.5652 18 7 2.7132 -8.1355 0.9994 19 6 2.8160 -9.4338 1.6985 20 6 1.2960 -9.4958 1.5660 21 6 1.4245 -8.5287 0.3911 22 6 0.7056 -10.8734 1.2401 23 6 -0.4038 -11.0584 2.3033 24 8 -0.7582 -9.7167 2.7072 25 6 0.4914 -8.9899 2.7739 26 6 3.2238 -3.5730 0.0879 27 1 -0.4850 0.8400 0.0004 28 1 5.9409 -1.5634 0.2313 29 1 7.0593 -3.7456 0.4220 30 1 5.7338 -5.8183 0.4024 31 1 2.3072 -6.0430 -0.3618 32 1 3.1655 -9.3533 2.7277 33 1 3.3395 -10.2010 1.1280 34 1 1.5260 -9.0214 -0.5759 35 1 0.6775 -7.7349 0.3902 36 1 1.4649 -11.6491 1.3389 37 1 0.2801 -10.8805 0.2366 38 1 -1.2659 -11.5636 1.8679 39 1 -0.0228 -11.6226 3.1546 40 1 0.3130 -7.9180 2.6885 41 1 1.0144 -9.2167 3.7030 42 1 2.1492 -3.5245 -0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365031657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:36 Heat of formation + Delta-G solvation = -21.308054 kcal Electronic energy + Delta-G solvation = -26021.370209 eV Core-core repulsion = 22162.267497 eV Total energy + Delta-G solvation = -3859.102712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38153 -39.88557 -38.78781 -37.50505 -36.35755 -34.21880 -32.35736 -31.89728 -29.91483 -29.26573 -28.52168 -26.76601 -26.18401 -25.15682 -23.20620 -21.93544 -21.73345 -20.08767 -19.31006 -18.40092 -17.77839 -17.49049 -16.82823 -16.18056 -15.98173 -15.71301 -15.45942 -15.11395 -14.93403 -14.46503 -14.26327 -13.96954 -13.75519 -13.45731 -13.40148 -13.17698 -13.04768 -12.32618 -12.20296 -12.14820 -12.01690 -11.86121 -11.60447 -11.41784 -11.19893 -10.91305 -10.90347 -10.79006 -10.26610 -10.14433 -9.98346 -9.60097 -9.47242 -8.93975 -8.83376 -7.77435 -7.26579 -6.41419 -4.08696 1.95796 2.26723 2.37410 3.20508 3.24412 3.26400 3.41663 3.48340 3.73395 3.82565 4.06702 4.24566 4.42237 4.44591 4.54226 4.70711 4.86434 4.97673 4.99162 5.08463 5.11702 5.17916 5.22173 5.27686 5.29740 5.37330 5.45813 5.50419 5.63615 5.66191 5.94745 6.02758 6.19921 6.22796 6.38834 6.48693 6.85564 6.93431 7.19390 7.22298 7.30388 7.62695 7.78905 7.96318 8.03922 8.59924 8.94155 9.56695 10.66315 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.002996 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.538210 B = 9343.431629 C =10822.399573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.104 0.896 9 O -0.216 6.216 10 C 0.174 3.826 11 C -0.201 4.201 12 C -0.065 4.065 13 C -0.197 4.197 14 C 0.196 3.804 15 N -0.678 5.678 16 C 0.728 3.272 17 O -0.569 6.569 18 N -0.664 5.664 19 C 0.147 3.853 20 C -0.130 4.130 21 C 0.115 3.885 22 C -0.141 4.141 23 C 0.044 3.956 24 O -0.373 6.373 25 C 0.071 3.929 26 C -0.245 4.245 27 H 0.279 0.721 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.403 0.597 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -22.413 1.028 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.122 0.878 9 O -0.121 6.121 10 C 0.122 3.878 11 C -0.221 4.221 12 C -0.084 4.084 13 C -0.218 4.218 14 C 0.102 3.898 15 N -0.324 5.324 16 C 0.432 3.568 17 O -0.446 6.446 18 N -0.405 5.405 19 C 0.024 3.976 20 C -0.131 4.131 21 C -0.008 4.008 22 C -0.179 4.179 23 C -0.033 4.033 24 O -0.291 6.291 25 C -0.006 4.006 26 C -0.267 4.267 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.237 0.763 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.912 -21.765 1.532 21.902 hybrid contribution -0.157 0.526 -0.433 0.700 sum 1.756 -21.238 1.099 21.339 Atomic orbital electron populations 1.69647 1.05553 1.28463 1.48268 1.24458 0.95026 0.98824 0.95659 0.86177 0.80380 0.81407 0.78939 1.19896 1.20861 1.18277 1.20722 0.76940 0.96507 1.52330 0.87828 1.83596 1.22537 1.25341 1.80674 1.18768 0.91439 0.84914 0.92693 1.20249 0.91866 0.98061 1.11891 1.20547 0.98687 0.91313 0.97885 1.20775 0.91827 0.98928 1.10295 1.17212 0.90156 0.83382 0.99068 1.42493 1.30444 1.12429 1.47050 1.15374 0.82366 0.79119 0.79928 1.90933 1.23364 1.81156 1.49112 1.49191 1.24087 1.14616 1.52622 1.22893 0.93066 0.83105 0.98523 1.23069 0.96248 0.96208 0.97584 1.23152 0.84974 0.96386 0.96303 1.22778 0.98708 0.95575 1.00823 1.23480 0.98042 0.85429 0.96347 1.89231 1.28014 1.22186 1.89681 1.23126 0.84143 0.97826 0.95469 1.20903 1.00988 0.90323 1.14493 0.91090 0.86400 0.86454 0.85574 0.76253 0.89598 0.89479 0.89259 0.89442 0.89675 0.89757 0.88938 0.92101 0.88368 0.91265 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.48 0.77 -24.57 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.71 28.62 -169.99 -4.86 16.85 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -10.93 9.94 30.89 0.31 -10.63 16 8 H 0.10 2.96 5.44 -52.49 -0.29 2.67 16 9 O -0.22 -5.72 8.58 0.07 0.00 -5.72 16 10 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 11 C -0.20 -4.10 9.99 -39.36 -0.39 -4.50 16 12 C -0.07 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.20 -3.81 8.70 -39.35 -0.34 -4.15 16 14 C 0.20 3.82 6.29 -83.72 -0.53 3.29 16 15 N -0.68 -10.94 5.34 -14.24 -0.08 -11.02 16 16 C 0.73 11.72 8.60 -86.92 -0.75 10.97 16 17 O -0.57 -11.21 14.50 5.29 0.08 -11.13 16 18 N -0.66 -7.64 3.62 -190.47 -0.69 -8.32 16 19 C 0.15 1.23 8.06 -3.47 -0.03 1.21 16 20 C -0.13 -0.93 1.21 -154.43 -0.19 -1.11 16 21 C 0.11 0.92 7.60 -3.46 -0.03 0.89 16 22 C -0.14 -0.70 6.60 -25.60 -0.17 -0.86 16 23 C 0.04 0.27 7.66 38.09 0.29 0.56 16 24 O -0.37 -3.64 11.66 -35.23 -0.41 -4.05 16 25 C 0.07 0.62 7.08 37.52 0.27 0.89 16 26 C -0.25 -5.35 9.08 -39.21 -0.36 -5.71 16 27 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 29 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 30 H 0.13 2.44 6.22 -52.48 -0.33 2.11 16 31 H 0.40 5.40 8.43 -40.82 -0.34 5.06 16 32 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.08 0.30 7.97 -51.93 -0.41 -0.12 16 37 H 0.08 0.36 7.97 -51.93 -0.41 -0.05 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 41 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -33.79 351.35 -7.98 -41.76 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.42 Total: 6.16 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.67 Total: -5.25 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.01 Total: -43.91 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.33 Total: -20.90 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.86 Total: 16.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.79 -7.98 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365031657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.457 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds