Wall clock time and date at job start Tue Mar 31 2020 12:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47087 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47026 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47037 * 149.99923 * 3 2 1 7 7 C 1.38655 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99569 * 359.97438 * 7 2 1 9 9 O 1.34821 * 120.00085 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00361 * 174.97177 * 9 7 2 11 11 C 1.38949 * 120.03954 * 185.37551 * 10 9 7 12 12 C 1.38119 * 120.07069 * 180.02562 * 11 10 9 13 13 C 1.38198 * 120.14254 * 0.04509 * 12 11 10 14 14 C 1.38916 * 120.06514 * 359.97438 * 13 12 11 15 15 N 1.39939 * 120.03588 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00219 * 35.13030 * 15 14 13 17 17 O 1.21591 * 119.99693 * 355.49911 * 16 15 14 18 18 N 1.34773 * 120.00410 * 175.50176 * 16 15 14 19 19 C 1.47813 * 134.38382 * 179.97438 * 18 16 15 20 20 C 1.52706 * 85.72326 * 156.25901 * 19 18 16 21 21 C 1.47824 * 134.37635 * 359.97438 * 18 16 15 22 22 C 1.53379 * 115.97934 * 140.75438 * 20 19 18 23 23 C 1.54778 * 103.72387 * 129.44650 * 22 20 19 24 24 O 1.44529 * 104.87705 * 23.69900 * 23 22 20 25 25 C 1.44708 * 105.50940 * 320.24753 * 24 23 22 26 26 C 1.38739 * 120.03154 * 5.67605 * 10 9 7 27 27 H 0.96999 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.96161 * 0.02655 * 11 10 9 29 29 H 1.08005 * 119.92662 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.96923 * 180.02562 * 13 12 11 31 31 H 0.97002 * 120.00230 * 215.12745 * 15 14 13 32 32 H 1.08999 * 113.83570 * 42.05859 * 19 18 16 33 33 H 1.08998 * 113.83587 * 270.46065 * 19 18 16 34 34 H 1.09000 * 113.83527 * 89.54161 * 21 18 16 35 35 H 1.09003 * 113.83193 * 317.93753 * 21 18 16 36 36 H 1.08992 * 110.59933 * 10.83919 * 22 20 19 37 37 H 1.09000 * 110.59497 * 248.04644 * 22 20 19 38 38 H 1.08996 * 110.35585 * 142.55181 * 23 22 20 39 39 H 1.09002 * 110.35544 * 264.84543 * 23 22 20 40 40 H 1.09005 * 110.42590 * 158.10199 * 25 24 23 41 41 H 1.09002 * 110.42970 * 280.58762 * 25 24 23 42 42 H 1.08001 * 120.06470 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9735 -2.4057 0.1044 11 6 5.3564 -2.4716 0.2228 12 6 5.9843 -3.6971 0.3297 13 6 5.2400 -4.8615 0.3183 14 6 3.8571 -4.8024 0.1998 15 7 3.1041 -5.9818 0.1878 16 6 3.4860 -7.0329 0.9401 17 8 4.5279 -6.9865 1.5652 18 7 2.7132 -8.1355 0.9994 19 6 2.8160 -9.4338 1.6985 20 6 1.2960 -9.4958 1.5660 21 6 1.4245 -8.5287 0.3911 22 6 0.7056 -10.8734 1.2401 23 6 -0.4038 -11.0584 2.3033 24 8 -0.7582 -9.7167 2.7072 25 6 0.4914 -8.9899 2.7739 26 6 3.2238 -3.5730 0.0879 27 1 -0.4850 0.8400 0.0004 28 1 5.9409 -1.5634 0.2313 29 1 7.0593 -3.7456 0.4220 30 1 5.7338 -5.8183 0.4024 31 1 2.3072 -6.0430 -0.3618 32 1 3.1655 -9.3533 2.7277 33 1 3.3395 -10.2010 1.1280 34 1 1.5260 -9.0214 -0.5759 35 1 0.6775 -7.7349 0.3902 36 1 1.4649 -11.6491 1.3389 37 1 0.2801 -10.8805 0.2366 38 1 -1.2659 -11.5636 1.8679 39 1 -0.0228 -11.6226 3.1546 40 1 0.3130 -7.9180 2.6885 41 1 1.0144 -9.2167 3.7030 42 1 2.1492 -3.5245 -0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365031657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:35 Heat of formation + Delta-G solvation = -44.540837 kcal Electronic energy + Delta-G solvation = -26022.377659 eV Core-core repulsion = 22162.267497 eV Total energy + Delta-G solvation = -3860.110161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24653 -41.22092 -40.27725 -38.57001 -37.79851 -35.66809 -34.40892 -32.68548 -31.12607 -30.66345 -29.72938 -27.47296 -27.35649 -26.89200 -23.88524 -23.41962 -23.22965 -21.31887 -20.17217 -19.85481 -19.44581 -18.90658 -17.63415 -17.34841 -16.97360 -16.79233 -16.64674 -16.47064 -16.04949 -15.79244 -15.68795 -15.53730 -15.24726 -14.72346 -14.69477 -14.21242 -14.00506 -13.98137 -13.76854 -13.30805 -12.94400 -12.81601 -12.69247 -12.66030 -12.49567 -12.36899 -12.08189 -11.97920 -11.51632 -11.45706 -11.34292 -11.05232 -10.83395 -10.76012 -9.89380 -9.39031 -8.91889 -8.49955 -6.22975 0.39629 0.64395 1.25955 1.33381 1.37426 1.53278 1.96131 2.28838 2.63088 2.77595 2.91954 3.00690 3.17612 3.20952 3.41009 3.82915 3.87191 4.07933 4.24301 4.29766 4.30549 4.39942 4.44357 4.46162 4.47941 4.57833 4.62890 4.64732 4.72632 4.74350 4.78358 4.90587 4.90864 5.07265 5.15393 5.33241 5.40235 5.48494 5.62815 5.74365 5.81959 5.89569 6.05585 6.21479 6.77314 6.84346 7.35041 7.57184 8.61315 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.002996 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.538210 B = 9343.431629 C =10822.399573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.081 0.919 9 O -0.239 6.239 10 C 0.142 3.858 11 C -0.201 4.201 12 C -0.052 4.052 13 C -0.192 4.192 14 C 0.198 3.802 15 N -0.675 5.675 16 C 0.722 3.278 17 O -0.610 6.610 18 N -0.665 5.665 19 C 0.145 3.855 20 C -0.117 4.117 21 C 0.113 3.887 22 C -0.129 4.129 23 C 0.035 3.965 24 O -0.401 6.401 25 C 0.067 3.933 26 C -0.256 4.256 27 H 0.285 0.715 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.133 0.867 31 H 0.414 0.586 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 -24.451 0.583 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.099 0.901 9 O -0.146 6.146 10 C 0.092 3.908 11 C -0.221 4.221 12 C -0.070 4.070 13 C -0.213 4.213 14 C 0.103 3.897 15 N -0.322 5.322 16 C 0.426 3.574 17 O -0.490 6.490 18 N -0.404 5.404 19 C 0.023 3.977 20 C -0.118 4.118 21 C -0.009 4.009 22 C -0.167 4.167 23 C -0.041 4.041 24 O -0.320 6.320 25 C -0.010 4.010 26 C -0.278 4.278 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.151 0.849 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.472 -23.892 1.076 24.167 hybrid contribution -0.602 0.822 -0.245 1.047 sum 2.870 -23.070 0.831 23.263 Atomic orbital electron populations 1.69726 1.06860 1.29594 1.50054 1.25259 0.95868 1.02102 0.95439 0.85233 0.78846 0.77421 0.79360 1.18901 1.19420 1.18633 1.20685 0.78049 0.96097 1.52740 0.90111 1.83543 1.21277 1.26854 1.82906 1.19311 0.92878 0.84526 0.94120 1.20552 0.90590 0.99778 1.11160 1.20998 1.00724 0.89874 0.95442 1.21055 0.91664 0.99695 1.08894 1.17263 0.90772 0.83739 0.97960 1.42421 1.30617 1.11721 1.47447 1.15545 0.82411 0.79897 0.79539 1.90884 1.25323 1.82156 1.50667 1.49364 1.24375 1.14237 1.52464 1.23215 0.94082 0.81900 0.98457 1.22882 0.95238 0.97374 0.96313 1.23476 0.82949 0.96506 0.97946 1.22775 0.98681 0.94274 1.00998 1.23734 0.99159 0.83913 0.97254 1.89206 1.28652 1.24075 1.90067 1.23106 0.84445 0.96839 0.96619 1.20853 1.00236 0.91252 1.15458 0.90583 0.84616 0.82203 0.84944 0.74963 0.90241 0.86687 0.86320 0.89985 0.87290 0.88438 0.87735 0.91128 0.90489 0.90943 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 13.96 21.61 0.30 -54.44 16 2 C 0.01 0.69 5.49 84.83 0.47 1.15 16 3 Si 0.97 45.34 28.62 68.60 1.96 47.30 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.40 -23.44 9.94 67.92 0.68 -22.76 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 9 O -0.24 -12.96 8.58 -22.66 -0.19 -13.16 16 10 C 0.14 6.75 6.64 22.56 0.15 6.90 16 11 C -0.20 -7.96 9.99 22.41 0.22 -7.74 16 12 C -0.05 -1.78 10.03 22.23 0.22 -1.55 16 13 C -0.19 -7.13 8.70 22.42 0.19 -6.94 16 14 C 0.20 7.73 6.29 38.13 0.24 7.97 16 15 N -0.68 -21.75 5.34 -317.23 -1.69 -23.45 16 16 C 0.72 22.80 8.60 179.06 1.54 24.34 16 17 O -0.61 -23.66 14.50 -4.00 -0.06 -23.72 16 18 N -0.67 -14.36 3.62 -874.80 -3.16 -17.53 16 19 C 0.15 2.09 8.06 86.03 0.69 2.79 16 20 C -0.12 -1.42 1.21 -51.95 -0.06 -1.48 16 21 C 0.11 1.58 7.60 86.03 0.65 2.24 16 22 C -0.13 -0.83 6.60 31.33 0.21 -0.62 16 23 C 0.04 0.35 7.66 72.59 0.56 0.91 16 24 O -0.40 -7.53 11.66 -148.98 -1.74 -9.26 16 25 C 0.07 1.14 7.08 72.22 0.51 1.65 16 26 C -0.26 -11.56 9.08 22.51 0.20 -11.35 16 27 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.13 4.87 6.22 -2.91 -0.02 4.85 16 31 H 0.41 11.18 8.43 -92.71 -0.78 10.40 16 32 H 0.08 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.12 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 36 H 0.11 0.25 7.97 -2.39 -0.02 0.23 16 37 H 0.10 0.44 7.97 -2.39 -0.02 0.42 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 1.60 7.92 -2.38 -0.02 1.58 16 41 H 0.07 1.15 8.07 -2.39 -0.02 1.13 16 42 H 0.12 5.64 5.64 -2.91 -0.02 5.63 16 Total: -1.00 -76.02 351.35 2.18 -73.84 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.28 Total: 24.91 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 6.48 Total: -4.50 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -4.55 Total: -95.42 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.99 Total: -46.14 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.96 Total: 47.30 kcal Total: -76.02 2.18 -73.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365031657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.301 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds