Wall clock time and date at job start Tue Mar 31 2020 13:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00158 * 2 1 4 4 C 1.50704 * 109.47146 * 275.00209 * 3 2 1 5 5 H 1.08002 * 119.99846 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99596 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99900 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47084 * 59.99844 * 8 6 4 10 10 H 1.48495 * 109.46953 * 299.99888 * 8 6 4 11 11 H 1.48500 * 109.47100 * 179.97438 * 8 6 4 12 12 S 1.65603 * 120.00106 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40176 * 18.73609 * 12 2 1 14 14 O 1.42101 * 106.40287 * 151.66009 * 12 2 1 15 15 N 1.65599 * 107.21820 * 265.19996 * 12 2 1 16 16 C 1.46707 * 125.20736 * 80.25527 * 15 12 2 17 17 C 1.55332 * 107.21972 * 182.11101 * 16 15 12 18 18 C 1.52999 * 109.99256 * 219.47293 * 17 16 15 19 19 C 1.52997 * 111.74286 * 96.36045 * 17 16 15 20 20 C 1.54417 * 103.28930 * 337.50188 * 17 16 15 21 21 H 1.08996 * 113.74584 * 156.82084 * 20 17 16 22 22 C 1.54399 * 110.10440 * 285.89580 * 20 17 16 23 23 O 1.43542 * 105.53138 * 143.12577 * 22 20 17 24 24 C 1.43108 * 110.02998 * 335.89401 * 23 22 20 25 25 C 1.47081 * 125.20502 * 260.56252 * 15 12 2 26 26 H 1.08999 * 112.97257 * 75.17161 * 25 15 12 27 27 H 1.08997 * 109.47092 * 95.07805 * 1 2 3 28 28 H 1.09006 * 109.47167 * 215.07570 * 1 2 3 29 29 H 1.09000 * 109.47394 * 335.07684 * 1 2 3 30 30 H 1.08996 * 109.47282 * 155.00216 * 3 2 1 31 31 H 1.08996 * 109.46911 * 34.99806 * 3 2 1 32 32 H 0.96996 * 120.00848 * 0.02562 * 7 6 4 33 33 H 1.09000 * 109.86409 * 300.92241 * 16 15 12 34 34 H 1.08998 * 109.86440 * 62.01609 * 16 15 12 35 35 H 1.08998 * 109.47128 * 173.43218 * 18 17 16 36 36 H 1.09004 * 109.46807 * 293.44001 * 18 17 16 37 37 H 1.09008 * 109.47001 * 53.43145 * 18 17 16 38 38 H 1.09001 * 109.47168 * 305.55021 * 19 17 16 39 39 H 1.08998 * 109.47342 * 65.54731 * 19 17 16 40 40 H 1.08996 * 109.47262 * 185.55048 * 19 17 16 41 41 H 1.09005 * 110.23544 * 262.14765 * 22 20 17 42 42 H 1.09002 * 110.23759 * 24.02454 * 22 20 17 43 43 H 1.09007 * 109.76983 * 242.73398 * 24 23 22 44 44 H 1.08999 * 109.77718 * 121.98593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0007 2.9504 -1.6665 7 7 3.5034 3.6468 -0.6706 8 14 3.1796 3.5660 -3.4210 9 1 1.8334 3.7722 -4.0130 10 1 3.9252 2.5635 -4.2236 11 1 3.9221 4.8521 -3.4209 12 16 2.2930 -1.4341 -0.0006 13 8 1.3757 -2.4269 -0.4389 14 8 3.5327 -1.1815 -0.6476 15 7 2.6527 -1.7932 1.5754 16 6 1.7244 -2.3949 2.5389 17 6 2.4730 -2.4980 3.8960 18 6 2.1253 -3.8185 4.5863 19 6 2.1530 -1.3145 4.8112 20 6 3.9608 -2.4773 3.4831 21 1 4.6316 -2.1452 4.2754 22 6 4.3573 -3.8327 2.8588 23 8 5.2749 -3.5151 1.8016 24 6 5.0597 -2.1735 1.3523 25 6 3.9499 -1.5517 2.2253 26 1 4.1174 -0.5013 2.4635 27 1 -0.3633 -0.0910 -1.0236 28 1 -0.3634 -0.8411 0.5906 29 1 -0.3634 0.9319 0.4331 30 1 3.1857 1.1177 0.4343 31 1 1.6501 2.0043 0.5894 32 1 3.4108 3.3270 0.2404 33 1 0.8478 -1.7578 2.6563 34 1 1.4221 -3.3838 2.1941 35 1 2.7413 -3.9356 5.4779 36 1 1.0728 -3.8141 4.8697 37 1 2.3141 -4.6464 3.9029 38 1 2.3611 -0.3823 4.2860 39 1 1.1001 -1.3462 5.0915 40 1 2.7696 -1.3716 5.7082 41 1 4.8434 -4.4630 3.6034 42 1 3.4769 -4.3348 2.4575 43 1 4.7471 -2.1801 0.3080 44 1 5.9788 -1.5972 1.4585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413370126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:48 Heat of formation + Delta-G solvation = -108.858459 kcal Electronic energy + Delta-G solvation = -27482.749812 eV Core-core repulsion = 23755.294581 eV Total energy + Delta-G solvation = -3727.455231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88257 -37.09060 -36.61751 -35.73320 -35.36056 -33.81734 -32.66556 -30.15642 -28.93104 -27.55156 -27.43904 -25.59017 -24.83541 -22.86812 -22.51856 -21.54921 -19.35619 -18.68682 -17.67461 -17.16361 -16.69478 -16.22598 -15.72099 -15.62262 -14.93670 -14.58608 -14.41793 -14.10274 -13.93889 -13.71763 -13.40756 -13.32888 -12.91005 -12.80594 -12.52951 -12.38290 -12.36912 -12.15198 -11.95767 -11.75453 -11.67654 -11.51890 -11.33881 -11.17457 -10.96326 -10.87865 -10.74600 -10.67530 -10.59405 -10.49649 -10.08889 -9.40806 -9.27404 -8.99280 -8.42440 -8.02054 -6.43571 -4.15382 0.96924 3.28682 3.43601 3.47950 3.64877 3.80737 3.87611 4.00297 4.22045 4.51754 4.55514 4.73546 4.80290 4.91986 4.98002 5.08683 5.16606 5.22923 5.32936 5.39015 5.42395 5.42915 5.51405 5.57697 5.65626 5.68912 5.77905 5.81569 5.87547 5.89802 5.93045 6.08906 6.14119 6.18951 6.30501 6.34563 6.44738 6.80028 7.04384 7.10074 7.36238 7.95214 8.40191 8.75238 9.53166 10.94304 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.004789 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.061786 B = 5845.722828 C = 6053.113106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.993 5.993 3 C 0.250 3.750 4 C -0.607 4.607 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 1.069 2.931 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.281 1.281 12 S 2.793 3.207 13 O -0.988 6.988 14 O -0.952 6.952 15 N -1.015 6.015 16 C 0.128 3.872 17 C -0.063 4.063 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.120 4.120 21 H 0.110 0.890 22 C 0.059 3.941 23 O -0.382 6.382 24 C 0.011 3.989 25 C 0.127 3.873 26 H 0.104 0.896 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -12.163 13.641 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.835 5.835 3 C 0.128 3.872 4 C -0.646 4.646 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.545 5.545 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.206 1.206 12 S 2.803 3.197 13 O -0.972 6.972 14 O -0.936 6.936 15 N -0.853 5.853 16 C 0.002 3.998 17 C -0.064 4.064 18 C -0.200 4.200 19 C -0.194 4.194 20 C -0.140 4.140 21 H 0.128 0.872 22 C -0.017 4.017 23 O -0.301 6.301 24 C -0.066 4.066 25 C 0.020 3.980 26 H 0.122 0.878 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.191 -11.558 11.772 16.642 hybrid contribution -0.992 -0.711 1.358 1.826 sum -3.183 -12.269 13.130 18.249 Atomic orbital electron populations 1.21230 0.79774 1.01446 1.01364 1.57577 1.14354 1.23077 1.88453 1.19112 0.90205 0.79556 0.98353 1.22283 1.40249 1.09552 0.92506 0.92754 1.25806 0.92909 0.93542 1.05947 1.70837 1.43224 1.40147 1.00303 0.83549 0.76539 0.76338 0.73949 1.21378 1.21144 1.20637 1.01752 0.73282 0.72680 0.71969 1.93540 1.65434 1.58918 1.79308 1.93536 1.43249 1.85150 1.71657 1.59236 1.19486 1.76666 1.29956 1.21967 0.91937 0.98260 0.87652 1.21578 0.93474 0.96857 0.94505 1.21908 1.01926 0.95643 1.00552 1.21790 1.01722 0.97205 0.98711 1.23826 0.97009 0.95841 0.97336 0.87158 1.23318 0.93390 0.95727 0.89298 1.88363 1.58087 1.30320 1.53352 1.24179 0.98373 0.82703 1.01308 1.22910 0.82965 0.99986 0.92147 0.87800 0.93036 0.93068 0.91211 0.95871 0.95816 0.92441 0.91633 0.90977 0.91967 0.92005 0.91867 0.91949 0.92114 0.92107 0.89906 0.91818 0.87110 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.89 10.27 59.84 0.61 2.50 16 2 N -0.99 -20.65 3.23 -123.05 -0.40 -21.05 16 3 C 0.25 6.12 4.41 -5.19 -0.02 6.10 16 4 C -0.61 -17.09 9.38 -34.44 -0.32 -17.42 16 5 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 7 N -0.91 -26.87 13.65 55.43 0.76 -26.12 16 8 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.79 56.42 6.01 -107.50 -0.65 55.78 16 13 O -0.99 -21.04 16.86 -57.17 -0.96 -22.01 16 14 O -0.95 -22.41 13.78 -57.17 -0.79 -23.20 16 15 N -1.02 -15.84 3.36 -102.90 -0.35 -16.18 16 16 C 0.13 1.56 5.58 -2.69 -0.02 1.55 16 17 C -0.06 -0.59 0.75 -152.53 -0.11 -0.71 16 18 C -0.14 -1.05 7.99 37.16 0.30 -0.75 16 19 C -0.14 -1.16 8.54 37.16 0.32 -0.85 16 20 C -0.12 -1.28 3.44 -87.44 -0.30 -1.58 16 21 H 0.11 0.98 8.12 -51.93 -0.42 0.56 16 22 C 0.06 0.70 5.97 37.89 0.23 0.92 16 23 O -0.38 -5.97 11.34 -35.23 -0.40 -6.37 16 24 C 0.01 0.19 7.12 37.83 0.27 0.45 16 25 C 0.13 1.80 4.11 -65.24 -0.27 1.54 16 26 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.74 7.86 -51.93 -0.41 0.34 16 29 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 30 H 0.02 0.59 7.61 -51.93 -0.40 0.19 16 31 H 0.02 0.58 7.81 -51.93 -0.41 0.18 16 32 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 33 H 0.07 0.74 7.87 -51.93 -0.41 0.34 16 34 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.47 6.22 -51.92 -0.32 0.15 16 38 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.76 5.89 -51.93 -0.31 0.46 16 43 H 0.11 2.14 4.62 -51.93 -0.24 1.91 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -34.04 352.11 -8.99 -43.03 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.01 Total: -1.91 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.58 Total: -7.70 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.01 Total: -63.35 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.15 Total: -51.57 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Atomic # 16 Polarization: 56.42 SS G_CDS: -0.65 Total: 55.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.04 -8.99 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413370126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.828 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds