Wall clock time and date at job start Tue Mar 31 2020 13:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00158 * 2 1 4 4 C 1.50704 * 109.47146 * 275.00209 * 3 2 1 5 5 H 1.08002 * 119.99846 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99596 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99900 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47084 * 59.99844 * 8 6 4 10 10 H 1.48495 * 109.46953 * 299.99888 * 8 6 4 11 11 H 1.48500 * 109.47100 * 179.97438 * 8 6 4 12 12 S 1.65603 * 120.00106 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40176 * 18.73609 * 12 2 1 14 14 O 1.42101 * 106.40287 * 151.66009 * 12 2 1 15 15 N 1.65599 * 107.21820 * 265.19996 * 12 2 1 16 16 C 1.46707 * 125.20736 * 80.25527 * 15 12 2 17 17 C 1.55332 * 107.21972 * 182.11101 * 16 15 12 18 18 C 1.52999 * 109.99256 * 219.47293 * 17 16 15 19 19 C 1.52997 * 111.74286 * 96.36045 * 17 16 15 20 20 C 1.54417 * 103.28930 * 337.50188 * 17 16 15 21 21 H 1.08996 * 113.74584 * 156.82084 * 20 17 16 22 22 C 1.54399 * 110.10440 * 285.89580 * 20 17 16 23 23 O 1.43542 * 105.53138 * 143.12577 * 22 20 17 24 24 C 1.43108 * 110.02998 * 335.89401 * 23 22 20 25 25 C 1.47081 * 125.20502 * 260.56252 * 15 12 2 26 26 H 1.08999 * 112.97257 * 75.17161 * 25 15 12 27 27 H 1.08997 * 109.47092 * 95.07805 * 1 2 3 28 28 H 1.09006 * 109.47167 * 215.07570 * 1 2 3 29 29 H 1.09000 * 109.47394 * 335.07684 * 1 2 3 30 30 H 1.08996 * 109.47282 * 155.00216 * 3 2 1 31 31 H 1.08996 * 109.46911 * 34.99806 * 3 2 1 32 32 H 0.96996 * 120.00848 * 0.02562 * 7 6 4 33 33 H 1.09000 * 109.86409 * 300.92241 * 16 15 12 34 34 H 1.08998 * 109.86440 * 62.01609 * 16 15 12 35 35 H 1.08998 * 109.47128 * 173.43218 * 18 17 16 36 36 H 1.09004 * 109.46807 * 293.44001 * 18 17 16 37 37 H 1.09008 * 109.47001 * 53.43145 * 18 17 16 38 38 H 1.09001 * 109.47168 * 305.55021 * 19 17 16 39 39 H 1.08998 * 109.47342 * 65.54731 * 19 17 16 40 40 H 1.08996 * 109.47262 * 185.55048 * 19 17 16 41 41 H 1.09005 * 110.23544 * 262.14765 * 22 20 17 42 42 H 1.09002 * 110.23759 * 24.02454 * 22 20 17 43 43 H 1.09007 * 109.76983 * 242.73398 * 24 23 22 44 44 H 1.08999 * 109.77718 * 121.98593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0007 2.9504 -1.6665 7 7 3.5034 3.6468 -0.6706 8 14 3.1796 3.5660 -3.4210 9 1 1.8334 3.7722 -4.0130 10 1 3.9252 2.5635 -4.2236 11 1 3.9221 4.8521 -3.4209 12 16 2.2930 -1.4341 -0.0006 13 8 1.3757 -2.4269 -0.4389 14 8 3.5327 -1.1815 -0.6476 15 7 2.6527 -1.7932 1.5754 16 6 1.7244 -2.3949 2.5389 17 6 2.4730 -2.4980 3.8960 18 6 2.1253 -3.8185 4.5863 19 6 2.1530 -1.3145 4.8112 20 6 3.9608 -2.4773 3.4831 21 1 4.6316 -2.1452 4.2754 22 6 4.3573 -3.8327 2.8588 23 8 5.2749 -3.5151 1.8016 24 6 5.0597 -2.1735 1.3523 25 6 3.9499 -1.5517 2.2253 26 1 4.1174 -0.5013 2.4635 27 1 -0.3633 -0.0910 -1.0236 28 1 -0.3634 -0.8411 0.5906 29 1 -0.3634 0.9319 0.4331 30 1 3.1857 1.1177 0.4343 31 1 1.6501 2.0043 0.5894 32 1 3.4108 3.3270 0.2404 33 1 0.8478 -1.7578 2.6563 34 1 1.4221 -3.3838 2.1941 35 1 2.7413 -3.9356 5.4779 36 1 1.0728 -3.8141 4.8697 37 1 2.3141 -4.6464 3.9029 38 1 2.3611 -0.3823 4.2860 39 1 1.1001 -1.3462 5.0915 40 1 2.7696 -1.3716 5.7082 41 1 4.8434 -4.4630 3.6034 42 1 3.4769 -4.3348 2.4575 43 1 4.7471 -2.1801 0.3080 44 1 5.9788 -1.5972 1.4585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413370126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:47 Heat of formation + Delta-G solvation = -134.024958 kcal Electronic energy + Delta-G solvation = -27483.841113 eV Core-core repulsion = 23755.294581 eV Total energy + Delta-G solvation = -3728.546533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89928 -38.59857 -37.85269 -37.49635 -37.05715 -34.84105 -34.73363 -31.21580 -29.88713 -29.39373 -28.10880 -26.83770 -26.38079 -24.50445 -23.89293 -22.66600 -20.32062 -20.09997 -19.37096 -18.68551 -18.45062 -17.45432 -17.22572 -16.78310 -16.17725 -15.80684 -15.65762 -15.54633 -15.50580 -15.06533 -14.92972 -14.35427 -14.15310 -14.07512 -13.84062 -13.70866 -13.45233 -13.38185 -13.28292 -13.19671 -13.08642 -13.02405 -12.71577 -12.54932 -12.46628 -12.41006 -11.95963 -11.90580 -11.71853 -11.59598 -11.41824 -11.32671 -10.59444 -10.46094 -10.21030 -9.84803 -8.68300 -6.41887 -0.59667 1.50612 1.58309 1.77636 1.82958 2.34372 2.53661 2.81469 2.94667 3.06740 3.11405 3.47820 3.69663 3.82441 3.87202 3.98380 4.09004 4.22638 4.29013 4.32517 4.46164 4.49329 4.58078 4.65645 4.72046 4.75597 4.77052 4.81597 4.85222 4.88270 4.91616 5.03767 5.08215 5.09761 5.17879 5.21456 5.29273 5.40498 5.48478 5.65327 5.82889 5.95113 6.17068 6.51550 7.33105 8.69729 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.004789 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.061786 B = 5845.722828 C = 6053.113106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.000 6.000 3 C 0.263 3.737 4 C -0.624 4.624 5 H 0.040 0.960 6 C -0.024 4.024 7 N -0.928 5.928 8 Si 1.107 2.893 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.276 1.276 12 S 2.804 3.196 13 O -1.003 7.003 14 O -0.994 6.994 15 N -1.010 6.010 16 C 0.113 3.887 17 C -0.052 4.052 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.104 4.104 21 H 0.138 0.862 22 C 0.050 3.950 23 O -0.400 6.400 24 C 0.008 3.992 25 C 0.117 3.883 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 -12.962 15.838 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.841 5.841 3 C 0.139 3.861 4 C -0.663 4.663 5 H 0.058 0.942 6 C -0.223 4.223 7 N -0.565 5.565 8 Si 0.929 3.071 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.200 1.200 12 S 2.815 3.185 13 O -0.987 6.987 14 O -0.978 6.978 15 N -0.851 5.851 16 C -0.012 4.012 17 C -0.053 4.053 18 C -0.197 4.197 19 C -0.192 4.192 20 C -0.123 4.123 21 H 0.156 0.844 22 C -0.026 4.026 23 O -0.320 6.320 24 C -0.070 4.070 25 C 0.011 3.989 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.977 -12.377 13.973 18.902 hybrid contribution -0.772 -0.567 0.736 1.208 sum -3.749 -12.944 14.709 19.949 Atomic orbital electron populations 1.21474 0.77887 1.03552 1.01709 1.57519 1.15707 1.21811 1.89033 1.18739 0.90097 0.80969 0.96311 1.22625 1.40077 1.09637 0.93953 0.94167 1.27098 0.92351 0.93990 1.08848 1.70931 1.44443 1.40717 1.00406 0.83067 0.77705 0.76127 0.70250 1.19114 1.20736 1.20040 1.01129 0.72223 0.72347 0.72818 1.93507 1.65735 1.59086 1.80400 1.93496 1.44924 1.85625 1.73762 1.58808 1.20838 1.76309 1.29122 1.22379 0.92150 0.98228 0.88443 1.21593 0.91773 0.98828 0.93121 1.21911 1.03125 0.93794 1.00913 1.21796 1.02929 0.95625 0.98878 1.23894 0.98613 0.93780 0.96057 0.84413 1.23620 0.93144 0.96765 0.89039 1.88340 1.59120 1.29808 1.54775 1.24047 0.99361 0.83657 0.99914 1.23102 0.81448 1.00866 0.93492 0.87687 0.93844 0.89960 0.89913 0.97113 0.95691 0.93117 0.90596 0.90858 0.90006 0.90874 0.92144 0.93785 0.90995 0.90128 0.86783 0.92210 0.90681 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.39 10.27 127.77 1.31 4.70 16 2 N -1.00 -42.06 3.23 -543.23 -1.75 -43.81 16 3 C 0.26 13.14 4.41 85.63 0.38 13.51 16 4 C -0.62 -35.85 9.38 25.60 0.24 -35.60 16 5 H 0.04 2.37 7.81 -2.91 -0.02 2.34 16 6 C -0.02 -1.35 5.46 84.66 0.46 -0.89 16 7 N -0.93 -55.49 13.65 21.45 0.29 -55.20 16 8 Si 1.11 51.38 29.90 68.60 2.05 53.43 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 S 2.80 115.79 6.01 -56.49 -0.34 115.45 16 13 O -1.00 -43.14 16.86 -128.00 -2.16 -45.30 16 14 O -0.99 -49.09 13.78 -128.00 -1.76 -50.86 16 15 N -1.01 -31.23 3.36 -479.46 -1.61 -32.84 16 16 C 0.11 2.55 5.58 87.14 0.49 3.04 16 17 C -0.05 -0.81 0.75 -50.90 -0.04 -0.85 16 18 C -0.14 -1.48 7.99 71.98 0.57 -0.90 16 19 C -0.14 -1.82 8.54 71.98 0.61 -1.21 16 20 C -0.10 -1.94 3.44 -8.73 -0.03 -1.97 16 21 H 0.14 1.89 8.12 -2.39 -0.02 1.87 16 22 C 0.05 1.07 5.97 72.46 0.43 1.50 16 23 O -0.40 -12.36 11.34 -148.98 -1.69 -14.05 16 24 C 0.01 0.26 7.12 72.42 0.52 0.77 16 25 C 0.12 3.29 4.11 46.42 0.19 3.48 16 26 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 2.27 7.86 -2.38 -0.02 2.25 16 29 H 0.08 2.58 7.89 -2.39 -0.02 2.56 16 30 H 0.01 0.57 7.61 -2.39 -0.02 0.55 16 31 H 0.03 1.24 7.81 -2.39 -0.02 1.22 16 32 H 0.26 15.28 7.22 -92.71 -0.67 14.61 16 33 H 0.08 1.56 7.87 -2.39 -0.02 1.54 16 34 H 0.07 1.65 7.55 -2.39 -0.02 1.63 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.70 6.22 -2.38 -0.01 0.68 16 38 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.06 1.32 5.89 -2.39 -0.01 1.31 16 43 H 0.08 3.09 4.62 -2.38 -0.01 3.07 16 44 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -75.39 352.11 -0.75 -76.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.08 Total: 11.47 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 5.14 Total: -14.42 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -3.07 Total: -131.85 kcal Atomic # 8 Polarization: -104.60 SS G_CDS: -5.61 Total: -110.21 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Atomic # 16 Polarization: 115.79 SS G_CDS: -0.34 Total: 115.45 kcal Total: -75.39 -0.75 -76.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413370126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.887 kcal (2) G-P(sol) polarization free energy of solvation -75.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds