Wall clock time and date at job start Tue Mar 31 2020 12:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46965 * 299.99670 * 3 2 1 6 6 H 1.48495 * 109.47219 * 59.99505 * 3 2 1 7 7 C 1.38629 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99804 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.35784 * 117.00159 * 174.96453 * 9 7 2 11 11 C 1.38899 * 120.00017 * 5.34783 * 10 9 7 12 12 C 1.37999 * 120.00390 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00008 * 359.97438 * 12 11 10 14 14 N 1.40029 * 120.00503 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99649 * 35.13392 * 14 13 12 16 16 O 1.21591 * 120.00246 * 355.49852 * 15 14 13 17 17 N 1.34775 * 120.00054 * 175.49180 * 15 14 13 18 18 C 1.46496 * 120.00052 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.81129 * 31.68087 * 18 17 15 20 20 C 1.55808 * 110.69877 * 268.26006 * 18 17 15 21 21 C 1.55818 * 102.71639 * 241.59486 * 20 18 17 22 22 H 1.08997 * 115.93909 * 158.65673 * 21 20 18 23 23 C 1.55823 * 105.32760 * 287.53483 * 21 20 18 24 24 C 1.54998 * 102.95210 * 72.77950 * 23 21 20 25 25 C 1.55818 * 102.78918 * 359.90935 * 24 23 21 26 26 H 1.09004 * 115.38375 * 158.11273 * 25 24 23 27 27 O 1.46533 * 101.24499 * 32.41858 * 25 24 23 28 28 C 1.38915 * 119.99587 * 0.25594 * 13 12 11 29 29 C 1.38015 * 119.99760 * 359.48725 * 28 13 12 30 30 H 0.97003 * 120.00262 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99684 * 0.04667 * 11 10 9 32 32 H 1.08001 * 120.00392 * 180.02562 * 12 11 10 33 33 H 0.96997 * 120.00370 * 215.12704 * 14 13 12 34 34 H 0.97003 * 119.99821 * 0.02562 * 17 15 14 35 35 H 1.08993 * 110.59310 * 123.38096 * 20 18 17 36 36 H 1.09006 * 111.13324 * 0.05402 * 20 18 17 37 37 H 1.08998 * 110.74513 * 314.35929 * 23 21 20 38 38 H 1.09000 * 110.74602 * 191.19514 * 23 21 20 39 39 H 1.09000 * 110.74750 * 118.23980 * 24 23 21 40 40 H 1.09003 * 110.74377 * 241.40212 * 24 23 21 41 41 H 1.07994 * 120.00172 * 179.74718 * 28 13 12 42 42 H 1.07994 * 119.99974 * 180.25441 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8910 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5046 -0.1051 11 6 3.4577 -3.4374 -0.0950 12 6 4.2053 -4.5923 -0.2029 13 6 3.5704 -5.8222 -0.3211 14 7 4.3290 -6.9941 -0.4311 15 6 5.4951 -7.1070 0.2351 16 8 5.9289 -6.1623 0.8658 17 7 6.1802 -8.2672 0.2026 18 6 7.4474 -8.3901 0.9272 19 1 7.4421 -7.7711 1.8244 20 6 8.6474 -8.0199 0.0049 21 6 9.4667 -9.3445 -0.0401 22 1 10.1434 -9.4580 -0.8870 23 6 10.1289 -9.4673 1.3651 24 6 8.9344 -9.8379 2.2808 25 6 7.7364 -9.8788 1.2853 26 1 6.8778 -10.4660 1.6113 27 8 8.3966 -10.3439 0.0626 28 6 2.1830 -5.8889 -0.3361 29 6 1.4354 -4.7343 -0.2228 30 1 -0.4851 0.8400 -0.0004 31 1 3.9514 -2.4812 -0.0023 32 1 5.2841 -4.5401 -0.1945 33 1 4.0151 -7.7246 -0.9868 34 1 5.8342 -9.0208 -0.3008 35 1 9.2366 -7.2163 0.4465 36 1 8.3057 -7.7432 -0.9925 37 1 10.5684 -8.5173 1.6691 38 1 10.8794 -10.2577 1.3705 39 1 9.0885 -10.8143 2.7401 40 1 8.7809 -9.0741 3.0431 41 1 1.6893 -6.8446 -0.4321 42 1 0.3567 -4.7866 -0.2303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465052197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:06 Heat of formation + Delta-G solvation = -51.325281 kcal Electronic energy + Delta-G solvation = -25754.313142 eV Core-core repulsion = 21893.908785 eV Total energy + Delta-G solvation = -3860.404357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28926 -40.02743 -38.66845 -36.60941 -34.47657 -33.90231 -32.44397 -32.12227 -30.31015 -30.15128 -29.36734 -27.46457 -25.22716 -23.02686 -22.23967 -21.92964 -21.36922 -20.57607 -20.40619 -18.53486 -17.89424 -17.55939 -17.08972 -16.49897 -15.96379 -15.65391 -15.05579 -14.75428 -14.49571 -14.39666 -14.09585 -13.78185 -13.56343 -13.50775 -12.96122 -12.84219 -12.66796 -12.43365 -12.07237 -11.78157 -11.70846 -11.60913 -11.54760 -11.47543 -11.37740 -11.01587 -10.83976 -10.70703 -10.41187 -10.39279 -9.93027 -9.65463 -9.16925 -9.14813 -8.65425 -8.15564 -6.87815 -6.40965 -3.98389 2.18389 2.28750 2.67310 3.14577 3.17587 3.23263 3.31849 3.41240 4.00831 4.09427 4.18644 4.23768 4.31671 4.52527 4.62154 4.67606 4.80421 4.88461 5.10094 5.13376 5.15232 5.30342 5.38191 5.46040 5.55734 5.63068 5.68718 5.71981 5.75523 5.81010 6.11163 6.17505 6.22454 6.31849 6.44783 6.71832 6.78297 7.00560 7.15018 7.23915 7.38255 7.48928 7.83574 8.04141 8.07699 8.69364 9.05185 9.75307 10.77232 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.002337 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.044049 B =11977.294816 C =12718.751665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.179 6.179 10 C 0.145 3.855 11 C -0.220 4.220 12 C -0.064 4.064 13 C 0.053 3.947 14 N -0.674 5.674 15 C 0.700 3.300 16 O -0.576 6.576 17 N -0.738 5.738 18 C 0.140 3.860 19 H 0.105 0.895 20 C -0.160 4.160 21 C 0.062 3.938 22 H 0.131 0.869 23 C -0.151 4.151 24 C -0.146 4.146 25 C 0.056 3.944 26 H 0.134 0.866 27 O -0.374 6.374 28 C -0.095 4.095 29 C -0.178 4.178 30 H 0.269 0.731 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.398 0.602 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.939 -20.588 0.434 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.091 3.909 11 C -0.239 4.239 12 C -0.084 4.084 13 C -0.040 4.040 14 N -0.322 5.322 15 C 0.400 3.600 16 O -0.452 6.452 17 N -0.394 5.394 18 C 0.033 3.967 19 H 0.123 0.877 20 C -0.199 4.199 21 C 0.004 3.996 22 H 0.148 0.852 23 C -0.188 4.188 24 C -0.184 4.184 25 C -0.002 4.002 26 H 0.152 0.848 27 O -0.293 6.293 28 C -0.116 4.116 29 C -0.198 4.198 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.232 0.768 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.865 -19.697 0.916 25.947 hybrid contribution 0.240 0.231 -0.386 0.510 sum 17.105 -19.466 0.529 25.919 Atomic orbital electron populations 1.70055 1.05923 1.27472 1.46486 1.25276 0.95844 0.98803 0.96665 0.85652 0.79217 0.80419 0.78189 1.19064 1.20186 1.20186 1.21378 0.91865 0.80838 1.52445 0.89003 1.83974 1.34241 1.11392 1.78593 1.19407 0.90276 0.88135 0.93065 1.21108 0.93548 0.98763 1.10529 1.20875 0.99911 0.90249 0.97387 1.17043 0.89468 0.84616 1.12893 1.42293 1.21625 1.18411 1.49822 1.15977 0.80680 0.83234 0.80075 1.90928 1.69367 1.37700 1.47230 1.45032 1.24009 1.14067 1.56273 1.22655 0.82254 0.96342 0.95436 0.87680 1.23872 0.96975 0.97605 1.01420 1.24774 0.89582 0.87312 0.97901 0.85166 1.23277 0.98029 1.02507 0.95009 1.23182 0.94309 1.02909 0.98016 1.24963 0.96351 0.93200 0.85708 0.84808 1.90113 1.44844 1.50691 1.43625 1.20327 0.91369 0.97446 1.02420 1.19971 0.99429 0.89833 1.10546 0.92144 0.85259 0.85604 0.76841 0.76914 0.89787 0.90144 0.90264 0.90756 0.90319 0.90047 0.86815 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.06 9.48 30.88 0.29 -10.77 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.18 -5.16 9.76 -0.01 0.00 -5.16 16 10 C 0.14 3.57 6.65 -39.09 -0.26 3.31 16 11 C -0.22 -5.06 9.16 -39.42 -0.36 -5.42 16 12 C -0.06 -1.32 8.69 -39.42 -0.34 -1.67 16 13 C 0.05 0.95 6.30 -83.61 -0.53 0.43 16 14 N -0.67 -9.41 5.35 -14.18 -0.08 -9.49 16 15 C 0.70 10.23 8.41 -86.92 -0.73 9.50 16 16 O -0.58 -10.85 13.42 5.29 0.07 -10.78 16 17 N -0.74 -7.61 5.11 -55.76 -0.28 -7.89 16 18 C 0.14 1.32 2.90 -64.93 -0.19 1.13 16 19 H 0.11 1.16 7.22 -51.93 -0.37 0.78 16 20 C -0.16 -1.39 6.33 -23.73 -0.15 -1.54 16 21 C 0.06 0.45 5.73 -23.72 -0.14 0.31 16 22 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 23 C -0.15 -0.91 6.51 -24.17 -0.16 -1.07 16 24 C -0.15 -0.91 6.52 -24.17 -0.16 -1.07 16 25 C 0.06 0.42 5.30 -23.72 -0.13 0.29 16 26 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 27 O -0.37 -3.37 11.64 -35.23 -0.41 -3.78 16 28 C -0.10 -1.68 9.96 -39.41 -0.39 -2.07 16 29 C -0.18 -3.75 9.99 -39.42 -0.39 -4.14 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.13 3.00 5.63 -52.48 -0.30 2.71 16 32 H 0.13 2.61 6.22 -52.49 -0.33 2.28 16 33 H 0.40 4.02 8.84 -40.82 -0.36 3.66 16 34 H 0.40 3.12 8.68 -40.82 -0.35 2.76 16 35 H 0.08 0.72 7.80 -51.93 -0.41 0.31 16 36 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 37 H 0.08 0.43 7.80 -51.93 -0.41 0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.48 7.81 -51.93 -0.41 0.08 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -34.43 347.44 -8.74 -43.17 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.29 Total: 9.45 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.73 Total: -11.82 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.40 Total: -42.22 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.34 Total: -19.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.43 -8.74 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465052197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.153 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds