Wall clock time and date at job start Tue Mar 31 2020 12:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46965 * 299.99670 * 3 2 1 6 6 H 1.48495 * 109.47219 * 59.99505 * 3 2 1 7 7 C 1.38629 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99804 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.35784 * 117.00159 * 174.96453 * 9 7 2 11 11 C 1.38899 * 120.00017 * 5.34783 * 10 9 7 12 12 C 1.37999 * 120.00390 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00008 * 359.97438 * 12 11 10 14 14 N 1.40029 * 120.00503 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99649 * 35.13392 * 14 13 12 16 16 O 1.21591 * 120.00246 * 355.49852 * 15 14 13 17 17 N 1.34775 * 120.00054 * 175.49180 * 15 14 13 18 18 C 1.46496 * 120.00052 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.81129 * 31.68087 * 18 17 15 20 20 C 1.55808 * 110.69877 * 268.26006 * 18 17 15 21 21 C 1.55818 * 102.71639 * 241.59486 * 20 18 17 22 22 H 1.08997 * 115.93909 * 158.65673 * 21 20 18 23 23 C 1.55823 * 105.32760 * 287.53483 * 21 20 18 24 24 C 1.54998 * 102.95210 * 72.77950 * 23 21 20 25 25 C 1.55818 * 102.78918 * 359.90935 * 24 23 21 26 26 H 1.09004 * 115.38375 * 158.11273 * 25 24 23 27 27 O 1.46533 * 101.24499 * 32.41858 * 25 24 23 28 28 C 1.38915 * 119.99587 * 0.25594 * 13 12 11 29 29 C 1.38015 * 119.99760 * 359.48725 * 28 13 12 30 30 H 0.97003 * 120.00262 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99684 * 0.04667 * 11 10 9 32 32 H 1.08001 * 120.00392 * 180.02562 * 12 11 10 33 33 H 0.96997 * 120.00370 * 215.12704 * 14 13 12 34 34 H 0.97003 * 119.99821 * 0.02562 * 17 15 14 35 35 H 1.08993 * 110.59310 * 123.38096 * 20 18 17 36 36 H 1.09006 * 111.13324 * 0.05402 * 20 18 17 37 37 H 1.08998 * 110.74513 * 314.35929 * 23 21 20 38 38 H 1.09000 * 110.74602 * 191.19514 * 23 21 20 39 39 H 1.09000 * 110.74750 * 118.23980 * 24 23 21 40 40 H 1.09003 * 110.74377 * 241.40212 * 24 23 21 41 41 H 1.07994 * 120.00172 * 179.74718 * 28 13 12 42 42 H 1.07994 * 119.99974 * 180.25441 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2126 6 1 1.8910 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5046 -0.1051 11 6 3.4577 -3.4374 -0.0950 12 6 4.2053 -4.5923 -0.2029 13 6 3.5704 -5.8222 -0.3211 14 7 4.3290 -6.9941 -0.4311 15 6 5.4951 -7.1070 0.2351 16 8 5.9289 -6.1623 0.8658 17 7 6.1802 -8.2672 0.2026 18 6 7.4474 -8.3901 0.9272 19 1 7.4421 -7.7711 1.8244 20 6 8.6474 -8.0199 0.0049 21 6 9.4667 -9.3445 -0.0401 22 1 10.1434 -9.4580 -0.8870 23 6 10.1289 -9.4673 1.3651 24 6 8.9344 -9.8379 2.2808 25 6 7.7364 -9.8788 1.2853 26 1 6.8778 -10.4660 1.6113 27 8 8.3966 -10.3439 0.0626 28 6 2.1830 -5.8889 -0.3361 29 6 1.4354 -4.7343 -0.2228 30 1 -0.4851 0.8400 -0.0004 31 1 3.9514 -2.4812 -0.0023 32 1 5.2841 -4.5401 -0.1945 33 1 4.0151 -7.7246 -0.9868 34 1 5.8342 -9.0208 -0.3008 35 1 9.2366 -7.2163 0.4465 36 1 8.3057 -7.7432 -0.9925 37 1 10.5684 -8.5173 1.6691 38 1 10.8794 -10.2577 1.3705 39 1 9.0885 -10.8143 2.7401 40 1 8.7809 -9.0741 3.0431 41 1 1.6893 -6.8446 -0.4321 42 1 0.3567 -4.7866 -0.2303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465052197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:05 Heat of formation + Delta-G solvation = -76.329872 kcal Electronic energy + Delta-G solvation = -25755.397422 eV Core-core repulsion = 21893.908785 eV Total energy + Delta-G solvation = -3861.488637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.06843 -41.27306 -40.33143 -38.26145 -35.54325 -35.34792 -34.14072 -33.02892 -31.83768 -30.94766 -30.32055 -28.88129 -27.22247 -24.21965 -23.65204 -22.81105 -22.39333 -21.69535 -21.21460 -20.07316 -19.45523 -18.92827 -18.27202 -17.70175 -16.98404 -16.54538 -16.32937 -16.19952 -15.85767 -15.51870 -15.43505 -15.29278 -15.20957 -14.64866 -14.45658 -14.14509 -13.61800 -13.52637 -13.38147 -13.22207 -13.12255 -12.71807 -12.62319 -12.43177 -12.39607 -12.17369 -12.11106 -11.97722 -11.55170 -11.39771 -11.23576 -11.06036 -10.92281 -10.54683 -10.08838 -9.81973 -8.57062 -8.46242 -6.12752 0.54116 0.60509 1.35201 1.42310 1.53177 1.58120 2.07420 2.18425 2.80768 2.83883 3.15894 3.21210 3.52436 3.53765 3.60585 3.73400 3.92017 4.05702 4.11081 4.14528 4.23687 4.37389 4.39772 4.49875 4.53514 4.67586 4.74347 4.82473 4.98578 5.01344 5.02304 5.08481 5.12257 5.15146 5.18352 5.36346 5.42173 5.46119 5.60012 5.64013 5.72214 5.99270 6.04139 6.20741 6.98627 7.03293 7.53030 7.78561 8.76749 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.002337 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.044049 B =11977.294816 C =12718.751665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.228 6.228 10 C 0.105 3.895 11 C -0.228 4.228 12 C -0.076 4.076 13 C 0.081 3.919 14 N -0.662 5.662 15 C 0.698 3.302 16 O -0.619 6.619 17 N -0.717 5.717 18 C 0.132 3.868 19 H 0.088 0.912 20 C -0.160 4.160 21 C 0.064 3.936 22 H 0.147 0.853 23 C -0.149 4.149 24 C -0.146 4.146 25 C 0.063 3.937 26 H 0.150 0.850 27 O -0.388 6.388 28 C -0.078 4.078 29 C -0.179 4.179 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.422 0.578 34 H 0.413 0.587 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.704 -23.506 0.179 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.248 4.248 12 C -0.096 4.096 13 C -0.013 4.013 14 N -0.312 5.312 15 C 0.398 3.602 16 O -0.499 6.499 17 N -0.372 5.372 18 C 0.026 3.974 19 H 0.106 0.894 20 C -0.199 4.199 21 C 0.007 3.993 22 H 0.164 0.836 23 C -0.187 4.187 24 C -0.185 4.185 25 C 0.005 3.995 26 H 0.167 0.833 27 O -0.308 6.308 28 C -0.098 4.098 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.260 0.740 34 H 0.250 0.750 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.184 0.816 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.672 -22.744 0.631 29.433 hybrid contribution -0.144 0.754 -0.319 0.832 sum 18.528 -21.990 0.311 28.756 Atomic orbital electron populations 1.70183 1.07824 1.28692 1.48968 1.26521 0.96878 1.02535 0.95953 0.84560 0.78068 0.75072 0.78698 1.17976 1.19067 1.19229 1.21795 0.92357 0.81619 1.53056 0.88623 1.83936 1.35557 1.12390 1.81577 1.19929 0.91058 0.88410 0.95173 1.21082 0.93311 0.99232 1.11148 1.20926 0.99781 0.90743 0.98180 1.17149 0.90153 0.85127 1.08895 1.42091 1.21174 1.17711 1.50191 1.16142 0.80643 0.83727 0.79638 1.90917 1.70381 1.39577 1.49025 1.44866 1.23706 1.13058 1.55584 1.22806 0.81861 0.97854 0.94882 0.89395 1.23838 0.97007 0.98656 1.00397 1.24918 0.89332 0.85769 0.99291 0.83595 1.23295 0.98143 1.03170 0.94095 1.23219 0.93746 1.03645 0.97840 1.25051 0.97263 0.91547 0.85683 0.83255 1.90104 1.45396 1.51077 1.44200 1.20743 0.90908 0.98338 0.99833 1.20313 1.00329 0.89588 1.09625 0.91809 0.86709 0.85756 0.73967 0.75017 0.89976 0.91363 0.89845 0.89721 0.89171 0.89940 0.81580 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 3 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.41 -24.71 9.48 67.91 0.64 -24.07 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.94 9.76 -22.95 -0.22 -14.16 16 10 C 0.10 5.36 6.65 22.59 0.15 5.51 16 11 C -0.23 -10.87 9.16 22.37 0.20 -10.67 16 12 C -0.08 -3.13 8.69 22.37 0.19 -2.93 16 13 C 0.08 2.74 6.30 38.16 0.24 2.98 16 14 N -0.66 -16.26 5.35 -317.04 -1.69 -17.95 16 15 C 0.70 18.86 8.41 179.06 1.51 20.37 16 16 O -0.62 -22.83 13.42 -4.00 -0.05 -22.88 16 17 N -0.72 -12.93 5.11 -448.58 -2.29 -15.23 16 18 C 0.13 2.26 2.90 46.94 0.14 2.39 16 19 H 0.09 1.86 7.22 -2.39 -0.02 1.84 16 20 C -0.16 -2.56 6.33 32.54 0.21 -2.36 16 21 C 0.06 0.78 5.73 32.54 0.19 0.96 16 22 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 23 C -0.15 -1.44 6.51 32.25 0.21 -1.23 16 24 C -0.15 -1.47 6.52 32.25 0.21 -1.26 16 25 C 0.06 0.77 5.30 32.54 0.17 0.94 16 26 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 27 O -0.39 -5.91 11.64 -148.98 -1.73 -7.65 16 28 C -0.08 -2.51 9.96 22.38 0.22 -2.29 16 29 C -0.18 -7.44 9.99 22.38 0.22 -7.21 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.12 5.68 5.63 -2.91 -0.02 5.66 16 32 H 0.12 5.18 6.22 -2.91 -0.02 5.16 16 33 H 0.42 6.53 8.84 -92.71 -0.82 5.71 16 34 H 0.41 5.02 8.68 -92.71 -0.80 4.21 16 35 H 0.08 1.33 7.80 -2.39 -0.02 1.31 16 36 H 0.07 1.26 8.01 -2.38 -0.02 1.24 16 37 H 0.08 0.74 7.80 -2.39 -0.02 0.72 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.82 7.81 -2.39 -0.02 0.80 16 41 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 42 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -79.76 347.44 0.76 -79.00 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.54 Total: 28.92 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.97 Total: -19.64 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -3.69 Total: -89.79 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -2.01 Total: -44.69 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -79.76 0.76 -79.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465052197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.675 kcal (2) G-P(sol) polarization free energy of solvation -79.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds