Wall clock time and date at job start Tue Mar 31 2020 12:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46243 * 126.95922 * 2 1 4 4 C 1.39707 * 134.19634 * 359.97438 * 3 2 1 5 5 C 1.36619 * 119.71425 * 179.97438 * 4 3 2 6 6 C 1.38838 * 120.44212 * 0.02615 * 5 4 3 7 7 C 1.37794 * 120.74616 * 359.97438 * 6 5 4 8 8 C 1.39029 * 119.85108 * 0.02562 * 7 6 5 9 9 O 1.34709 * 133.23541 * 180.02562 * 8 7 6 10 10 C 1.34954 * 110.86175 * 179.97438 * 9 8 7 11 11 C 1.46974 * 125.12969 * 180.02562 * 10 9 8 12 12 O 1.21659 * 119.99941 * 179.97438 * 11 10 9 13 13 N 1.34772 * 120.00472 * 359.97438 * 11 10 9 14 14 C 1.46502 * 120.00626 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47601 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47552 * 59.99504 * 15 14 13 17 17 O 1.42900 * 109.47035 * 299.99828 * 15 14 13 18 18 C 1.52997 * 109.47562 * 180.02562 * 15 14 13 19 19 N 1.46496 * 109.47650 * 184.99863 * 18 15 14 20 20 C 1.36936 * 120.00396 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99538 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47336 * 60.00035 * 24 22 20 26 26 H 1.48506 * 109.46694 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46889 * 299.99626 * 24 22 20 28 28 H 1.09002 * 109.47468 * 270.02072 * 1 2 3 29 29 H 1.09006 * 109.47310 * 30.02190 * 1 2 3 30 30 H 1.09003 * 109.46981 * 150.01658 * 1 2 3 31 31 H 1.07998 * 120.14216 * 359.94135 * 4 3 2 32 32 H 1.08001 * 119.77731 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.62663 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.07131 * 180.02562 * 7 6 5 35 35 H 0.97008 * 119.99994 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.46833 * 299.99947 * 14 13 11 37 37 H 1.09006 * 109.46923 * 59.99411 * 14 13 11 38 38 H 0.96704 * 114.00272 * 300.00072 * 17 15 14 39 39 H 1.09001 * 109.46729 * 304.99913 * 18 15 14 40 40 H 1.08996 * 109.47373 * 64.99471 * 18 15 14 41 41 H 0.97007 * 119.99636 * 359.97438 * 19 18 15 42 42 H 0.97000 * 120.00307 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1715 2.5490 -0.0004 5 6 3.2398 3.4006 0.0002 6 6 4.5360 2.9031 0.0008 7 6 4.7693 1.5450 0.0013 8 6 3.6980 0.6588 0.0006 9 8 3.6125 -0.6855 0.0012 10 6 2.3235 -1.0851 0.0006 11 6 1.8716 -2.4837 0.0015 12 8 0.6821 -2.7386 0.0013 13 7 2.7750 -3.4838 0.0026 14 6 2.3246 -4.8779 0.0030 15 6 3.5404 -5.8067 0.0036 16 1 4.1409 -5.6187 0.8936 17 8 4.3281 -5.5610 -1.1631 18 6 3.0700 -7.2626 0.0034 19 7 4.2290 -8.1504 0.1243 20 6 4.0523 -9.5081 0.1466 21 1 3.0583 -9.9244 0.0745 22 6 5.1506 -10.3492 0.2606 23 7 6.3619 -9.8418 0.3479 24 14 4.9094 -12.2014 0.2902 25 1 4.2544 -12.6355 -0.9698 26 1 6.2290 -12.8704 0.4187 27 1 4.0531 -12.5706 1.4460 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.1653 2.9413 -0.0019 32 1 3.0749 4.4679 0.0003 33 1 5.3709 3.5882 0.0009 34 1 5.7820 1.1699 0.0021 35 1 3.7236 -3.2807 0.0024 36 1 1.7234 -5.0652 0.8927 37 1 1.7245 -5.0661 -0.8873 38 1 3.8566 -5.7088 -1.9943 39 1 2.3970 -7.4271 0.8449 40 1 2.5455 -7.4748 -0.9282 41 1 5.1218 -7.7764 0.1887 42 1 7.1294 -10.4296 0.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497104278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:16 Heat of formation + Delta-G solvation = -49.298386 kcal Electronic energy + Delta-G solvation = -25263.771502 eV Core-core repulsion = 21403.455038 eV Total energy + Delta-G solvation = -3860.316464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.84073 -39.79166 -38.20654 -37.67987 -34.75607 -34.13023 -33.93531 -31.39398 -30.94432 -30.43486 -29.25671 -27.77707 -25.66989 -24.07110 -23.07850 -22.51225 -21.49303 -20.95541 -20.33285 -18.58841 -17.40302 -17.17391 -16.86542 -16.78302 -16.13917 -15.95464 -15.66838 -14.93570 -14.66437 -14.46864 -14.43211 -14.09039 -13.71301 -13.64405 -13.38959 -13.08592 -12.96133 -12.80163 -12.61143 -12.58580 -12.35878 -12.15720 -11.89514 -11.33744 -10.98127 -10.81258 -10.67423 -10.40471 -10.24765 -10.21940 -9.83361 -9.56041 -9.31892 -9.03415 -8.91555 -8.50336 -6.95855 -5.77252 -3.07291 0.22848 0.95258 1.50257 2.17246 2.91198 2.93253 3.29592 3.43584 3.47715 3.49034 4.07557 4.18260 4.45925 4.52426 4.58038 4.66612 4.71272 4.81367 4.85236 4.99121 5.07689 5.18112 5.27307 5.42984 5.53689 5.57193 5.60342 5.64608 5.68789 5.79757 5.89673 5.91968 6.01706 6.05171 6.14964 6.16211 6.26434 6.47897 6.63821 6.67987 7.28649 7.66604 7.84673 7.92725 8.40671 9.52233 10.08423 10.44004 11.44973 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.002124 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.876432 B =13179.667515 C =14042.122102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.110 4.110 8 C 0.073 3.927 9 O -0.181 6.181 10 C -0.032 4.032 11 C 0.597 3.403 12 O -0.517 6.517 13 N -0.706 5.706 14 C 0.088 3.912 15 C 0.088 3.912 16 H 0.106 0.894 17 O -0.552 6.552 18 C 0.128 3.872 19 N -0.726 5.726 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.412 0.588 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.374 0.626 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.389 0.611 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 28.899 -1.224 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.102 4.102 7 C -0.129 4.129 8 C 0.025 3.975 9 O -0.083 6.083 10 C -0.082 4.082 11 C 0.383 3.617 12 O -0.395 6.395 13 N -0.356 5.356 14 C -0.036 4.036 15 C 0.028 3.972 16 H 0.124 0.876 17 O -0.357 6.357 18 C -0.001 4.001 19 N -0.371 5.371 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.221 0.779 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.223 0.777 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.200 28.446 -0.775 29.615 hybrid contribution 0.256 -0.912 -0.310 0.997 sum -7.945 27.534 -1.085 28.678 Atomic orbital electron populations 1.20451 0.87394 1.03919 1.03181 1.21399 0.97046 0.89480 1.00546 1.19822 0.92369 0.94350 1.07785 1.20354 0.99828 0.90221 0.97320 1.20804 0.92242 1.00093 1.02741 1.21026 0.97564 0.93747 0.97866 1.20048 0.96959 0.91175 1.04698 1.19739 0.95549 0.81090 1.01152 1.84042 1.26988 1.20920 1.76353 1.21767 0.81124 0.94785 1.10522 1.16622 0.85869 0.81712 0.77531 1.90851 1.15291 1.82450 1.50928 1.45847 1.10464 1.06068 1.73265 1.22229 0.98189 0.79517 1.03651 1.22417 0.90977 0.93982 0.89794 0.87587 1.86595 1.42232 1.91157 1.15689 1.21192 0.92055 0.87999 0.98847 1.42230 1.03768 1.02376 1.88691 1.19170 0.92988 0.82466 1.42999 0.91226 1.24771 0.95259 0.98095 1.02731 1.69665 0.97370 1.34036 1.56730 0.86244 0.76594 0.85327 0.77848 1.21231 1.21645 1.21226 0.90415 0.91331 0.88913 0.85270 0.85099 0.84501 0.84547 0.75208 0.89864 0.90525 0.77942 0.95295 0.95840 0.77703 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.81 36.01 0.35 -0.53 16 2 C -0.08 -0.94 6.39 -102.28 -0.65 -1.59 16 3 C -0.14 -1.51 6.37 -105.19 -0.67 -2.18 16 4 C -0.06 -0.47 10.06 -39.62 -0.40 -0.87 16 5 C -0.14 -0.91 9.98 -39.94 -0.40 -1.31 16 6 C -0.08 -0.55 10.01 -39.52 -0.40 -0.94 16 7 C -0.11 -0.94 10.07 -39.45 -0.40 -1.33 16 8 C 0.07 0.81 7.41 -38.35 -0.28 0.53 16 9 O -0.18 -2.25 10.28 2.77 0.03 -2.22 16 10 C -0.03 -0.41 7.07 -36.92 -0.26 -0.67 16 11 C 0.60 8.05 7.79 -12.72 -0.10 7.95 16 12 O -0.52 -7.90 14.62 5.23 0.08 -7.83 16 13 N -0.71 -8.80 5.44 -61.53 -0.33 -9.13 16 14 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 15 C 0.09 1.34 3.09 -26.74 -0.08 1.26 16 16 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 17 O -0.55 -8.70 13.03 -35.23 -0.46 -9.16 16 18 C 0.13 2.44 5.90 -4.05 -0.02 2.42 16 19 N -0.73 -18.33 5.55 -59.91 -0.33 -18.66 16 20 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.01 6.37 -51.93 -0.33 0.68 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.41 4.89 8.06 -40.82 -0.33 4.56 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.37 4.84 9.05 45.56 0.41 5.26 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -33.78 364.13 -8.17 -41.95 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.76 Total: 13.42 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.58 Total: -3.64 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.06 Total: -55.46 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.35 Total: -19.21 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.78 -8.17 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497104278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.344 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds