Wall clock time and date at job start Tue Mar 31 2020 12:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.46243 * 126.95922 * 2 1 4 4 C 1.39707 * 134.19634 * 359.97438 * 3 2 1 5 5 C 1.36619 * 119.71425 * 179.97438 * 4 3 2 6 6 C 1.38838 * 120.44212 * 0.02615 * 5 4 3 7 7 C 1.37794 * 120.74616 * 359.97438 * 6 5 4 8 8 C 1.39029 * 119.85108 * 0.02562 * 7 6 5 9 9 O 1.34709 * 133.23541 * 180.02562 * 8 7 6 10 10 C 1.34954 * 110.86175 * 179.97438 * 9 8 7 11 11 C 1.46974 * 125.12969 * 180.02562 * 10 9 8 12 12 O 1.21659 * 119.99941 * 179.97438 * 11 10 9 13 13 N 1.34772 * 120.00472 * 359.97438 * 11 10 9 14 14 C 1.46502 * 120.00626 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47601 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47552 * 59.99504 * 15 14 13 17 17 O 1.42900 * 109.47035 * 299.99828 * 15 14 13 18 18 C 1.52997 * 109.47562 * 180.02562 * 15 14 13 19 19 N 1.46496 * 109.47650 * 184.99863 * 18 15 14 20 20 C 1.36936 * 120.00396 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99538 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47336 * 60.00035 * 24 22 20 26 26 H 1.48506 * 109.46694 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46889 * 299.99626 * 24 22 20 28 28 H 1.09002 * 109.47468 * 270.02072 * 1 2 3 29 29 H 1.09006 * 109.47310 * 30.02190 * 1 2 3 30 30 H 1.09003 * 109.46981 * 150.01658 * 1 2 3 31 31 H 1.07998 * 120.14216 * 359.94135 * 4 3 2 32 32 H 1.08001 * 119.77731 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.62663 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.07131 * 180.02562 * 7 6 5 35 35 H 0.97008 * 119.99994 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.46833 * 299.99947 * 14 13 11 37 37 H 1.09006 * 109.46923 * 59.99411 * 14 13 11 38 38 H 0.96704 * 114.00272 * 300.00072 * 17 15 14 39 39 H 1.09001 * 109.46729 * 304.99913 * 18 15 14 40 40 H 1.08996 * 109.47373 * 64.99471 * 18 15 14 41 41 H 0.97007 * 119.99636 * 359.97438 * 19 18 15 42 42 H 0.97000 * 120.00307 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1715 2.5490 -0.0004 5 6 3.2398 3.4006 0.0002 6 6 4.5360 2.9031 0.0008 7 6 4.7693 1.5450 0.0013 8 6 3.6980 0.6588 0.0006 9 8 3.6125 -0.6855 0.0012 10 6 2.3235 -1.0851 0.0006 11 6 1.8716 -2.4837 0.0015 12 8 0.6821 -2.7386 0.0013 13 7 2.7750 -3.4838 0.0026 14 6 2.3246 -4.8779 0.0030 15 6 3.5404 -5.8067 0.0036 16 1 4.1409 -5.6187 0.8936 17 8 4.3281 -5.5610 -1.1631 18 6 3.0700 -7.2626 0.0034 19 7 4.2290 -8.1504 0.1243 20 6 4.0523 -9.5081 0.1466 21 1 3.0583 -9.9244 0.0745 22 6 5.1506 -10.3492 0.2606 23 7 6.3619 -9.8418 0.3479 24 14 4.9094 -12.2014 0.2902 25 1 4.2544 -12.6355 -0.9698 26 1 6.2290 -12.8704 0.4187 27 1 4.0531 -12.5706 1.4460 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.1653 2.9413 -0.0019 32 1 3.0749 4.4679 0.0003 33 1 5.3709 3.5882 0.0009 34 1 5.7820 1.1699 0.0021 35 1 3.7236 -3.2807 0.0024 36 1 1.7234 -5.0652 0.8927 37 1 1.7245 -5.0661 -0.8873 38 1 3.8566 -5.7088 -1.9943 39 1 2.3970 -7.4271 0.8449 40 1 2.5455 -7.4748 -0.9282 41 1 5.1218 -7.7764 0.1887 42 1 7.1294 -10.4296 0.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497104278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:15 Heat of formation + Delta-G solvation = -74.675492 kcal Electronic energy + Delta-G solvation = -25264.871936 eV Core-core repulsion = 21403.455038 eV Total energy + Delta-G solvation = -3861.416898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61400 -40.83594 -39.03499 -38.78907 -36.16333 -35.58392 -34.84860 -33.23359 -31.60131 -31.32702 -30.47472 -28.73510 -27.12040 -25.24291 -24.07383 -23.70162 -22.82030 -21.87519 -21.16069 -19.57902 -19.13815 -18.15189 -17.91691 -17.67503 -17.13292 -16.98781 -16.74988 -16.43814 -15.80824 -15.76405 -15.41613 -15.07787 -14.94289 -14.75076 -14.41796 -14.26137 -14.10935 -13.87740 -13.78347 -13.35109 -13.26672 -13.20018 -12.97265 -12.77453 -12.72104 -12.21395 -12.02390 -11.93939 -11.82481 -11.44065 -11.01029 -10.98105 -10.94399 -10.35121 -9.69846 -9.23701 -9.02451 -7.95475 -5.25398 -0.52855 0.32136 0.73883 1.35844 1.47168 1.50521 1.56668 1.93382 1.95985 2.55459 2.69389 3.25977 3.35911 3.45972 3.50738 3.53614 3.72861 3.90476 3.97944 4.10821 4.17138 4.28418 4.36218 4.39693 4.49616 4.58133 4.61799 4.66369 4.71253 4.89952 4.92398 4.98461 5.09819 5.16738 5.19303 5.33864 5.38164 5.46313 5.47290 5.54797 5.97764 6.25170 6.29178 6.75574 6.85937 7.32252 8.07424 8.30197 9.27588 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.002124 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.876432 B =13179.667515 C =14042.122102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.078 4.078 3 C -0.164 4.164 4 C -0.064 4.064 5 C -0.136 4.136 6 C -0.071 4.071 7 C -0.128 4.128 8 C 0.046 3.954 9 O -0.197 6.197 10 C -0.064 4.064 11 C 0.599 3.401 12 O -0.541 6.541 13 N -0.701 5.701 14 C 0.101 3.899 15 C 0.106 3.894 16 H 0.098 0.902 17 O -0.564 6.564 18 C 0.124 3.876 19 N -0.741 5.741 20 C -0.249 4.249 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.977 3.023 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.277 1.277 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.166 0.834 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.386 0.614 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.376 0.624 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 31.149 -1.401 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.165 4.165 4 C -0.082 4.082 5 C -0.153 4.153 6 C -0.089 4.089 7 C -0.146 4.146 8 C -0.002 4.002 9 O -0.099 6.099 10 C -0.113 4.113 11 C 0.386 3.614 12 O -0.421 6.421 13 N -0.352 5.352 14 C -0.023 4.023 15 C 0.046 3.954 16 H 0.116 0.884 17 O -0.371 6.371 18 C -0.004 4.004 19 N -0.384 5.384 20 C -0.381 4.381 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.619 5.619 24 Si 0.805 3.195 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.203 1.203 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.169 0.831 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.165 0.835 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.235 0.765 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.208 0.792 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.117 30.716 -0.966 32.055 hybrid contribution 0.514 -1.389 -0.272 1.506 sum -8.603 29.327 -1.237 30.588 Atomic orbital electron populations 1.20485 0.86269 1.04284 1.03665 1.21783 0.97927 0.89742 0.98679 1.20054 0.91855 0.95363 1.09256 1.20728 1.01657 0.89130 0.96686 1.21276 0.91642 1.01658 1.00749 1.21524 0.98955 0.93237 0.95199 1.20414 0.96971 0.91873 1.05384 1.20286 0.96910 0.80767 1.02208 1.83980 1.26846 1.21995 1.77123 1.21621 0.81772 0.94587 1.13360 1.16715 0.85562 0.82207 0.76959 1.90825 1.16058 1.82993 1.52241 1.45758 1.10550 1.05761 1.73095 1.22017 0.96826 0.79254 1.04206 1.22115 0.91514 0.92206 0.89530 0.88387 1.86573 1.43028 1.91058 1.16447 1.21398 0.90366 0.89291 0.99303 1.42428 1.04840 1.02380 1.88753 1.19622 0.93262 0.83974 1.41251 0.90405 1.25635 0.95099 1.02710 1.03523 1.69832 0.98052 1.35315 1.58716 0.85169 0.76227 0.79842 0.78237 1.20282 1.22213 1.20275 0.89737 0.88897 0.90523 0.83084 0.81687 0.81134 0.83512 0.74902 0.89548 0.89751 0.76521 0.94522 0.94789 0.79217 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.81 71.24 0.70 -0.98 16 2 C -0.08 -1.80 6.39 -18.35 -0.12 -1.92 16 3 C -0.16 -3.37 6.37 -20.24 -0.13 -3.50 16 4 C -0.06 -0.86 10.06 22.25 0.22 -0.64 16 5 C -0.14 -1.26 9.98 22.03 0.22 -1.04 16 6 C -0.07 -0.71 10.01 22.31 0.22 -0.48 16 7 C -0.13 -2.02 10.07 22.35 0.23 -1.79 16 8 C 0.05 1.03 7.41 23.07 0.17 1.20 16 9 O -0.20 -5.10 10.28 -13.00 -0.13 -5.23 16 10 C -0.06 -1.69 7.07 24.00 0.17 -1.52 16 11 C 0.60 16.59 7.79 86.53 0.67 17.26 16 12 O -0.54 -16.87 14.62 -4.22 -0.06 -16.93 16 13 N -0.70 -17.76 5.44 -466.80 -2.54 -20.30 16 14 C 0.10 2.56 5.34 86.38 0.46 3.02 16 15 C 0.11 3.22 3.09 30.59 0.09 3.31 16 16 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 17 O -0.56 -17.74 13.03 -148.98 -1.94 -19.68 16 18 C 0.12 4.67 5.90 86.38 0.51 5.18 16 19 N -0.74 -37.66 5.55 -343.47 -1.91 -39.56 16 20 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 24 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.69 6.37 -2.39 -0.02 1.67 16 31 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 33 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.41 10.13 8.06 -92.70 -0.75 9.38 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.39 9.83 9.05 -74.05 -0.67 9.16 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.38 20.77 7.67 -92.70 -0.71 20.06 16 42 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.82 364.13 -0.59 -74.41 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -1.05 Total: 37.91 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.73 Total: 0.93 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.16 Total: -119.80 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -2.14 Total: -41.84 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -73.82 -0.59 -74.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497104278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.269 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds