Wall clock time and date at job start Tue Mar 31 2020 12:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.46253 * 126.95987 * 2 1 4 4 C 1.39699 * 134.18884 * 0.04417 * 3 2 1 5 5 C 1.36618 * 119.71337 * 180.31343 * 4 3 2 6 6 C 1.38842 * 120.44058 * 359.95675 * 5 4 3 7 7 C 1.37797 * 120.74343 * 0.02562 * 6 5 4 8 8 C 1.39032 * 119.85773 * 0.02562 * 7 6 5 9 9 O 1.34716 * 133.25057 * 180.02562 * 8 7 6 10 10 C 1.34943 * 110.86500 * 179.97438 * 9 8 7 11 11 C 1.46976 * 125.12892 * 180.02562 * 10 9 8 12 12 O 1.21659 * 119.99934 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00122 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47465 * 305.00253 * 15 14 13 17 17 O 1.42904 * 109.47221 * 65.00655 * 15 14 13 18 18 C 1.53003 * 109.47015 * 184.99978 * 15 14 13 19 19 N 1.46500 * 109.47377 * 180.02562 * 18 15 14 20 20 C 1.36937 * 120.00028 * 180.02562 * 19 18 15 21 21 H 1.08007 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00161 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00306 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99993 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 90.00125 * 24 22 20 26 26 H 1.48500 * 109.47460 * 210.00619 * 24 22 20 27 27 H 1.48509 * 109.47074 * 330.00255 * 24 22 20 28 28 H 1.09003 * 109.46982 * 270.14970 * 1 2 3 29 29 H 1.09002 * 109.46862 * 30.14457 * 1 2 3 30 30 H 1.08998 * 109.47064 * 150.14458 * 1 2 3 31 31 H 1.08001 * 120.14324 * 0.31243 * 4 3 2 32 32 H 1.07996 * 119.78516 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.62871 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.07328 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00018 * 0.27771 * 13 11 10 36 36 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 37 37 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 38 38 H 0.96695 * 113.99906 * 59.99617 * 17 15 14 39 39 H 1.08999 * 109.47145 * 300.00897 * 18 15 14 40 40 H 1.09000 * 109.46883 * 59.99966 * 18 15 14 41 41 H 0.96997 * 119.99983 * 0.02562 * 19 18 15 42 42 H 0.96997 * 119.99879 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3864 1.1686 0.0000 4 6 2.1715 2.5490 0.0008 5 6 3.2397 3.4007 -0.0060 6 6 4.5359 2.9032 -0.0127 7 6 4.7692 1.5451 -0.0132 8 6 3.6981 0.6588 -0.0075 9 8 3.6125 -0.6856 -0.0060 10 6 2.3236 -1.0851 0.0009 11 6 1.8716 -2.4837 0.0049 12 8 0.6821 -2.7385 0.0106 13 7 2.7751 -3.4838 0.0021 14 6 2.3245 -4.8779 0.0066 15 6 3.5403 -5.8067 0.0029 16 1 4.1831 -5.5604 -0.8422 17 8 4.2699 -5.6413 1.2205 18 6 3.0727 -7.2585 -0.1182 19 7 4.2367 -8.1479 -0.1211 20 6 4.0631 -9.5025 -0.2217 21 1 3.0680 -9.9152 -0.2984 22 6 5.1660 -10.3453 -0.2240 23 7 4.9992 -11.6473 -0.3212 24 14 6.8872 -9.6316 -0.0906 25 1 7.2742 -9.5368 1.3399 26 1 7.8453 -10.5128 -0.8053 27 1 6.9104 -8.2778 -0.7006 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8887 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 1.1652 2.9412 0.0067 32 1 3.0748 4.4680 -0.0058 33 1 5.3707 3.5884 -0.0176 34 1 5.7820 1.1700 -0.0180 35 1 3.7235 -3.2807 0.0016 36 1 1.7282 -5.0641 0.8998 37 1 1.7196 -5.0670 -0.8802 38 1 3.7586 -5.8437 2.0159 39 1 2.4298 -7.5047 0.7269 40 1 2.5161 -7.3846 -1.0468 41 1 5.1305 -7.7773 -0.0519 42 1 5.7700 -12.2361 -0.3232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497104280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:20 Heat of formation + Delta-G solvation = -45.580521 kcal Electronic energy + Delta-G solvation = -25344.036750 eV Core-core repulsion = 21483.881505 eV Total energy + Delta-G solvation = -3860.155245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89203 -39.86162 -38.26035 -37.82613 -34.86633 -34.25504 -34.02144 -31.54518 -31.00178 -30.54490 -29.54810 -27.90092 -25.88947 -24.09519 -23.11433 -22.26665 -21.58807 -20.99468 -20.39438 -18.66946 -17.73844 -17.45167 -16.90641 -16.84031 -16.17398 -16.09444 -15.72678 -15.00683 -14.73205 -14.58723 -14.43001 -14.09914 -13.84821 -13.66482 -13.43456 -13.27419 -13.08186 -12.84752 -12.65571 -12.61874 -12.41144 -12.19994 -12.05319 -11.38657 -11.31799 -10.88551 -10.85784 -10.47759 -10.29578 -10.18713 -9.81455 -9.58225 -9.39450 -9.08305 -8.94744 -8.55369 -7.27859 -5.79244 -3.15690 0.17894 0.90560 1.45239 2.11575 2.84961 2.86425 3.25007 3.38936 3.43843 3.46113 4.02108 4.13454 4.41151 4.48280 4.53326 4.58579 4.60916 4.67874 4.79974 4.94369 5.02682 5.07593 5.22793 5.38957 5.39774 5.49008 5.55103 5.59739 5.60056 5.74519 5.74987 5.79413 5.87241 5.97350 6.00041 6.10783 6.16528 6.38379 6.51303 6.62551 7.20618 7.73158 7.81434 7.96438 8.39207 9.18639 9.90567 10.10115 11.38691 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023669 B = 0.002323 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.720561 B =12047.993709 C =13100.207464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.083 4.083 7 C -0.111 4.111 8 C 0.073 3.927 9 O -0.182 6.182 10 C -0.034 4.034 11 C 0.598 3.402 12 O -0.515 6.515 13 N -0.708 5.708 14 C 0.089 3.911 15 C 0.084 3.916 16 H 0.105 0.895 17 O -0.556 6.556 18 C 0.131 3.869 19 N -0.749 5.749 20 C -0.249 4.249 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.888 3.112 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.411 0.589 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.377 0.623 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.367 0.633 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 33.209 1.178 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.102 4.102 7 C -0.129 4.129 8 C 0.025 3.975 9 O -0.084 6.084 10 C -0.083 4.083 11 C 0.383 3.617 12 O -0.393 6.393 13 N -0.358 5.358 14 C -0.035 4.035 15 C 0.024 3.976 16 H 0.123 0.877 17 O -0.361 6.361 18 C 0.003 3.997 19 N -0.396 5.396 20 C -0.378 4.378 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.718 3.282 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.200 0.800 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.412 32.722 0.739 33.175 hybrid contribution 1.301 0.343 0.424 1.411 sum -4.111 33.065 1.163 33.340 Atomic orbital electron populations 1.20458 0.87352 1.03972 1.03208 1.21412 0.97068 0.89472 1.00362 1.19826 0.92363 0.94364 1.07792 1.20360 0.99859 0.90214 0.97235 1.20810 0.92230 1.00123 1.02692 1.21030 0.97581 0.93740 0.97804 1.20043 0.96923 0.91182 1.04790 1.19737 0.95561 0.81068 1.01175 1.84030 1.27004 1.20943 1.76424 1.21751 0.81128 0.94771 1.10691 1.16616 0.85864 0.81699 0.77487 1.90859 1.15258 1.82434 1.50748 1.45849 1.10374 1.06081 1.73516 1.22212 0.97970 0.79431 1.03881 1.22460 0.92117 0.94573 0.88412 0.87683 1.86558 1.42832 1.91128 1.15600 1.21163 0.91353 0.87378 0.99804 1.42559 1.02877 1.03668 1.90469 1.19036 0.95145 0.80512 1.43131 0.89233 1.24679 0.97522 0.95124 1.01736 1.69706 1.29643 1.01667 1.57001 0.86494 0.85635 0.78134 0.77908 1.21000 1.21793 1.20274 0.90383 0.91285 0.88888 0.85228 0.85065 0.84489 0.84591 0.75350 0.90322 0.89674 0.77553 0.94936 0.94407 0.79997 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.81 36.01 0.35 -0.50 16 2 C -0.08 -0.89 6.39 -102.27 -0.65 -1.54 16 3 C -0.14 -1.46 6.37 -105.19 -0.67 -2.13 16 4 C -0.06 -0.45 10.06 -39.62 -0.40 -0.84 16 5 C -0.14 -0.86 9.98 -39.94 -0.40 -1.26 16 6 C -0.08 -0.51 10.01 -39.52 -0.40 -0.91 16 7 C -0.11 -0.89 10.07 -39.45 -0.40 -1.29 16 8 C 0.07 0.78 7.41 -38.35 -0.28 0.50 16 9 O -0.18 -2.16 10.28 2.78 0.03 -2.13 16 10 C -0.03 -0.41 7.07 -36.92 -0.26 -0.67 16 11 C 0.60 7.70 7.79 -12.72 -0.10 7.60 16 12 O -0.52 -7.61 14.62 5.22 0.08 -7.54 16 13 N -0.71 -8.26 5.50 -61.52 -0.34 -8.60 16 14 C 0.09 1.06 5.31 -4.04 -0.02 1.04 16 15 C 0.08 1.18 3.09 -26.73 -0.08 1.09 16 16 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 17 O -0.56 -8.01 13.03 -35.23 -0.46 -8.47 16 18 C 0.13 2.36 5.92 -4.04 -0.02 2.34 16 19 N -0.75 -17.61 5.30 -59.91 -0.32 -17.93 16 20 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 21 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 24 Si 0.89 22.43 27.74 -169.99 -4.71 17.72 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.98 6.38 -51.93 -0.33 0.65 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 33 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.41 4.48 8.19 -40.82 -0.33 4.15 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.38 4.43 9.04 45.56 0.41 4.84 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.37 8.62 5.40 -40.82 -0.22 8.40 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -34.60 361.01 -7.81 -42.41 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.72 Total: 11.40 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.59 Total: -3.70 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.12 Total: -55.13 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.35 Total: -18.14 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.60 -7.81 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497104280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.166 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds