Wall clock time and date at job start Tue Mar 31 2020 12:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.46253 * 126.95987 * 2 1 4 4 C 1.39699 * 134.18884 * 0.04417 * 3 2 1 5 5 C 1.36618 * 119.71337 * 180.31343 * 4 3 2 6 6 C 1.38842 * 120.44058 * 359.95675 * 5 4 3 7 7 C 1.37797 * 120.74343 * 0.02562 * 6 5 4 8 8 C 1.39032 * 119.85773 * 0.02562 * 7 6 5 9 9 O 1.34716 * 133.25057 * 180.02562 * 8 7 6 10 10 C 1.34943 * 110.86500 * 179.97438 * 9 8 7 11 11 C 1.46976 * 125.12892 * 180.02562 * 10 9 8 12 12 O 1.21659 * 119.99934 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00122 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47465 * 305.00253 * 15 14 13 17 17 O 1.42904 * 109.47221 * 65.00655 * 15 14 13 18 18 C 1.53003 * 109.47015 * 184.99978 * 15 14 13 19 19 N 1.46500 * 109.47377 * 180.02562 * 18 15 14 20 20 C 1.36937 * 120.00028 * 180.02562 * 19 18 15 21 21 H 1.08007 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00161 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00306 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99993 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 90.00125 * 24 22 20 26 26 H 1.48500 * 109.47460 * 210.00619 * 24 22 20 27 27 H 1.48509 * 109.47074 * 330.00255 * 24 22 20 28 28 H 1.09003 * 109.46982 * 270.14970 * 1 2 3 29 29 H 1.09002 * 109.46862 * 30.14457 * 1 2 3 30 30 H 1.08998 * 109.47064 * 150.14458 * 1 2 3 31 31 H 1.08001 * 120.14324 * 0.31243 * 4 3 2 32 32 H 1.07996 * 119.78516 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.62871 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.07328 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00018 * 0.27771 * 13 11 10 36 36 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 37 37 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 38 38 H 0.96695 * 113.99906 * 59.99617 * 17 15 14 39 39 H 1.08999 * 109.47145 * 300.00897 * 18 15 14 40 40 H 1.09000 * 109.46883 * 59.99966 * 18 15 14 41 41 H 0.96997 * 119.99983 * 0.02562 * 19 18 15 42 42 H 0.96997 * 119.99879 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3864 1.1686 0.0000 4 6 2.1715 2.5490 0.0008 5 6 3.2397 3.4007 -0.0060 6 6 4.5359 2.9032 -0.0127 7 6 4.7692 1.5451 -0.0132 8 6 3.6981 0.6588 -0.0075 9 8 3.6125 -0.6856 -0.0060 10 6 2.3236 -1.0851 0.0009 11 6 1.8716 -2.4837 0.0049 12 8 0.6821 -2.7385 0.0106 13 7 2.7751 -3.4838 0.0021 14 6 2.3245 -4.8779 0.0066 15 6 3.5403 -5.8067 0.0029 16 1 4.1831 -5.5604 -0.8422 17 8 4.2699 -5.6413 1.2205 18 6 3.0727 -7.2585 -0.1182 19 7 4.2367 -8.1479 -0.1211 20 6 4.0631 -9.5025 -0.2217 21 1 3.0680 -9.9152 -0.2984 22 6 5.1660 -10.3453 -0.2240 23 7 4.9992 -11.6473 -0.3212 24 14 6.8872 -9.6316 -0.0906 25 1 7.2742 -9.5368 1.3399 26 1 7.8453 -10.5128 -0.8053 27 1 6.9104 -8.2778 -0.7006 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8887 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 1.1652 2.9412 0.0067 32 1 3.0748 4.4680 -0.0058 33 1 5.3707 3.5884 -0.0176 34 1 5.7820 1.1700 -0.0180 35 1 3.7235 -3.2807 0.0016 36 1 1.7282 -5.0641 0.8998 37 1 1.7196 -5.0670 -0.8802 38 1 3.7586 -5.8437 2.0159 39 1 2.4298 -7.5047 0.7269 40 1 2.5161 -7.3846 -1.0468 41 1 5.1305 -7.7773 -0.0519 42 1 5.7700 -12.2361 -0.3232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497104280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:20 Heat of formation + Delta-G solvation = -72.112541 kcal Electronic energy + Delta-G solvation = -25345.187265 eV Core-core repulsion = 21483.881505 eV Total energy + Delta-G solvation = -3861.305760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.61898 -40.84346 -39.09238 -38.80103 -36.27219 -35.61445 -34.85850 -33.50112 -31.65645 -31.41412 -30.63539 -28.80962 -27.22703 -25.11018 -23.89608 -23.66344 -22.89875 -21.89719 -21.17193 -19.89000 -19.40881 -18.15221 -17.89780 -17.68100 -17.17815 -16.97359 -16.72063 -16.54886 -15.79397 -15.74244 -15.46060 -15.18198 -14.96498 -14.77531 -14.44712 -14.31776 -14.15580 -13.99039 -13.79704 -13.42063 -13.31148 -13.25503 -13.17958 -12.82890 -12.78100 -12.26578 -11.95959 -11.90828 -11.85243 -11.46032 -11.05101 -11.00459 -10.97583 -10.35824 -9.70483 -9.33059 -9.24189 -8.04771 -5.38474 -0.53383 0.31444 0.73339 1.34559 1.38731 1.41298 1.48652 1.93000 1.95167 2.47179 2.68724 3.22299 3.26404 3.34493 3.49634 3.49926 3.71926 3.89636 3.94863 4.05109 4.10049 4.16480 4.27822 4.39001 4.48532 4.56373 4.61087 4.66481 4.70575 4.89206 4.91045 4.97837 5.08143 5.15017 5.17694 5.33192 5.37456 5.45842 5.53672 5.72654 5.96987 6.18770 6.28564 6.72429 6.85548 7.06209 7.81682 8.00509 9.16377 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023669 B = 0.002323 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.720561 B =12047.993709 C =13100.207464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.079 4.079 3 C -0.165 4.165 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.127 4.127 8 C 0.047 3.953 9 O -0.195 6.195 10 C -0.064 4.064 11 C 0.599 3.401 12 O -0.541 6.541 13 N -0.701 5.701 14 C 0.099 3.901 15 C 0.104 3.896 16 H 0.108 0.892 17 O -0.565 6.565 18 C 0.125 3.875 19 N -0.753 5.753 20 C -0.237 4.237 21 H 0.059 0.941 22 C -0.064 4.064 23 N -0.982 5.982 24 Si 0.959 3.041 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.254 1.254 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.415 0.585 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.389 0.611 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.369 0.631 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 37.232 1.392 37.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.166 4.166 4 C -0.083 4.083 5 C -0.154 4.154 6 C -0.090 4.090 7 C -0.145 4.145 8 C -0.001 4.001 9 O -0.098 6.098 10 C -0.113 4.113 11 C 0.386 3.614 12 O -0.421 6.421 13 N -0.352 5.352 14 C -0.025 4.025 15 C 0.044 3.956 16 H 0.125 0.875 17 O -0.372 6.372 18 C -0.002 4.002 19 N -0.399 5.399 20 C -0.368 4.368 21 H 0.077 0.923 22 C -0.256 4.256 23 N -0.633 5.633 24 Si 0.786 3.214 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.179 1.179 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.166 0.834 35 H 0.252 0.748 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.238 0.762 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.202 0.798 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.491 36.800 0.962 37.086 hybrid contribution 0.928 -0.748 0.368 1.247 sum -3.563 36.052 1.330 36.252 Atomic orbital electron populations 1.20483 0.86363 1.04250 1.03649 1.21782 0.97893 0.89809 0.98714 1.20058 0.91936 0.95337 1.09249 1.20723 1.01630 0.89196 0.96717 1.21273 0.91687 1.01636 1.00757 1.21524 0.98906 0.93304 0.95219 1.20412 0.96989 0.91811 1.05336 1.20273 0.96841 0.80788 1.02207 1.83969 1.26775 1.21921 1.77133 1.21613 0.81769 0.94582 1.13310 1.16709 0.85572 0.82208 0.76955 1.90836 1.16146 1.82981 1.52140 1.45743 1.10507 1.05710 1.73191 1.22029 0.96908 0.79245 1.04293 1.22164 0.92669 0.92172 0.88597 0.87460 1.86536 1.43482 1.91019 1.16154 1.21385 0.89815 0.89026 1.00010 1.42551 1.04619 1.02441 1.90336 1.19044 0.93786 0.82795 1.41129 0.92329 1.25518 1.02047 0.95454 1.02552 1.69881 1.30755 1.03327 1.59292 0.85356 0.79907 0.78156 0.77967 1.20560 1.22222 1.17919 0.89751 0.88977 0.90540 0.83179 0.81772 0.81150 0.83398 0.74832 0.89799 0.89502 0.76180 0.94332 0.94120 0.79764 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.81 71.24 0.70 -0.93 16 2 C -0.08 -1.74 6.39 -18.34 -0.12 -1.86 16 3 C -0.16 -3.22 6.37 -20.23 -0.13 -3.35 16 4 C -0.06 -0.82 10.06 22.24 0.22 -0.60 16 5 C -0.14 -1.16 9.98 22.04 0.22 -0.94 16 6 C -0.07 -0.64 10.01 22.31 0.22 -0.42 16 7 C -0.13 -1.83 10.07 22.36 0.23 -1.61 16 8 C 0.05 0.97 7.41 23.07 0.17 1.15 16 9 O -0.20 -4.71 10.28 -12.96 -0.13 -4.84 16 10 C -0.06 -1.57 7.07 24.00 0.17 -1.41 16 11 C 0.60 15.61 7.79 86.53 0.67 16.28 16 12 O -0.54 -16.24 14.62 -4.22 -0.06 -16.30 16 13 N -0.70 -16.08 5.50 -466.79 -2.57 -18.65 16 14 C 0.10 2.28 5.31 86.38 0.46 2.73 16 15 C 0.10 2.75 3.09 30.60 0.09 2.85 16 16 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 17 O -0.56 -15.25 13.03 -148.98 -1.94 -17.19 16 18 C 0.12 4.37 5.92 86.38 0.51 4.88 16 19 N -0.75 -34.72 5.30 -343.45 -1.82 -36.54 16 20 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 21 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.98 -63.33 13.97 21.65 0.30 -63.03 16 24 Si 0.96 46.31 27.74 68.60 1.90 48.22 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.64 6.38 -2.39 -0.02 1.62 16 31 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.42 8.84 8.19 -92.71 -0.76 8.09 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.39 8.45 9.04 -74.06 -0.67 7.78 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 16.63 5.40 -92.71 -0.50 16.13 16 42 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -76.28 361.01 -0.45 -76.73 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.91 Total: 30.80 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 4.77 Total: 0.81 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -4.08 Total: -118.22 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.14 Total: -38.33 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.22 kcal Total: -76.28 -0.45 -76.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497104280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.617 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds