Wall clock time and date at job start Tue Mar 31 2020 12:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29813 * 126.33926 * 2 1 4 4 O 1.41327 * 109.72656 * 180.02562 * 3 2 1 5 5 C 1.34838 * 109.42232 * 359.97438 * 4 3 2 6 6 N 1.32447 * 133.09448 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.03596 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.16461 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47165 * 94.99347 * 8 7 6 10 10 C 1.52998 * 109.47046 * 214.99584 * 8 7 6 11 11 C 1.38594 * 121.66323 * 359.67053 * 7 6 5 12 12 C 1.39489 * 119.19485 * 0.62133 * 11 7 6 13 13 C 1.47892 * 121.11101 * 179.69537 * 12 11 7 14 14 O 1.21451 * 119.99784 * 144.86575 * 13 12 11 15 15 O 1.34696 * 119.99659 * 324.86406 * 13 12 11 16 16 C 1.45204 * 116.99782 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.46979 * 329.99934 * 16 15 13 18 18 C 1.52998 * 109.47365 * 89.99932 * 16 15 13 19 19 C 1.50707 * 109.47235 * 210.00136 * 16 15 13 20 20 H 1.07999 * 119.99590 * 0.02562 * 19 16 15 21 21 C 1.37872 * 120.00048 * 179.97438 * 19 16 15 22 22 N 1.31508 * 119.99680 * 180.02562 * 21 19 16 23 23 Si 1.86799 * 120.00051 * 359.97438 * 21 19 16 24 24 H 1.48506 * 109.46804 * 90.00138 * 23 21 19 25 25 H 1.48498 * 109.47204 * 210.00110 * 23 21 19 26 26 H 1.48501 * 109.47280 * 330.00148 * 23 21 19 27 27 C 1.40528 * 106.85783 * 0.02562 * 5 4 3 28 28 H 1.09008 * 109.46989 * 264.22287 * 1 2 3 29 29 H 1.09003 * 109.47220 * 24.21382 * 1 2 3 30 30 H 1.08998 * 109.47377 * 144.21864 * 1 2 3 31 31 H 1.09001 * 109.47274 * 334.99958 * 8 7 6 32 32 H 1.09000 * 109.47712 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47372 * 300.00226 * 9 8 7 34 34 H 1.09004 * 109.46915 * 59.99842 * 9 8 7 35 35 H 1.08994 * 109.46845 * 59.99971 * 10 8 7 36 36 H 1.08996 * 109.47287 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.46941 * 300.00101 * 10 8 7 38 38 H 1.08001 * 120.40207 * 180.32204 * 11 7 6 39 39 H 1.09005 * 109.46726 * 300.00231 * 18 16 15 40 40 H 1.09002 * 109.47146 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47070 * 60.00057 * 18 16 15 42 42 H 0.97007 * 120.00132 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6416 -0.0006 5 6 3.6966 -0.7051 -0.0004 6 7 4.7069 -1.5615 -0.0012 7 6 4.5182 -2.8635 -0.0013 8 6 5.7151 -3.7791 -0.0028 9 6 6.0455 -4.1890 1.4338 10 6 5.4014 -5.0274 -0.8300 11 6 3.2464 -3.4143 0.0062 12 6 2.1381 -2.5673 0.0009 13 6 0.7621 -3.1093 0.0018 14 8 -0.1189 -2.5287 0.6033 15 8 0.4860 -4.2469 -0.6645 16 6 -0.8861 -4.7201 -0.6207 17 1 -1.3455 -4.4157 0.3198 18 6 -1.6703 -4.1195 -1.7891 19 6 -0.9027 -6.2235 -0.7245 20 1 0.0253 -6.7687 -0.8140 21 6 -2.1023 -6.9027 -0.7041 22 7 -2.1166 -8.2146 -0.7942 23 14 -3.7071 -5.9596 -0.5471 24 1 -4.2113 -5.6121 -1.9000 25 1 -4.7096 -6.8017 0.1536 26 1 -3.4761 -4.7153 0.2298 27 6 2.3733 -1.1781 -0.0003 28 1 -0.3633 -0.1035 1.0225 29 1 -0.3634 0.9373 -0.4215 30 1 -0.3634 -0.8337 -0.6008 31 1 6.5691 -3.2600 -0.4379 32 1 6.9110 -4.8517 1.4328 33 1 6.2690 -3.2998 2.0231 34 1 5.1915 -4.7081 1.8690 35 1 5.1660 -4.7353 -1.8534 36 1 6.2669 -5.6898 -0.8307 37 1 4.5473 -5.5464 -0.3948 38 1 3.1150 -4.4863 0.0113 39 1 -1.6583 -3.0321 -1.7139 40 1 -2.7004 -4.4743 -1.7559 41 1 -1.2109 -4.4238 -2.7296 42 1 -2.9606 -8.6926 -0.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515066946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:08 Heat of formation + Delta-G solvation = -7.590022 kcal Electronic energy + Delta-G solvation = -26996.648647 eV Core-core repulsion = 23138.140794 eV Total energy + Delta-G solvation = -3858.507854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28669 -40.09831 -39.36971 -36.41071 -35.35519 -34.85103 -33.47589 -32.61037 -30.73000 -29.86887 -28.81083 -27.41729 -25.69957 -25.29388 -24.38764 -22.75884 -21.14822 -20.57640 -19.76915 -18.11782 -17.83121 -17.74860 -16.68747 -16.61076 -16.35953 -15.68477 -15.28953 -14.58270 -14.51663 -14.42751 -13.95036 -13.79440 -13.49635 -13.37565 -13.31068 -12.88657 -12.84447 -12.69060 -12.43494 -12.26530 -12.05825 -11.82737 -11.71994 -11.55706 -11.37390 -11.18897 -11.12473 -11.04721 -10.57986 -10.37600 -10.02883 -9.90135 -9.72718 -9.67571 -9.30852 -9.13926 -8.82431 -6.35492 -4.39487 -0.05972 0.65760 1.66813 1.87279 2.48499 2.85909 3.08364 3.20810 3.21955 3.31240 3.49507 3.82911 4.07871 4.14101 4.23443 4.54635 4.67642 4.80001 4.89612 4.95238 4.98874 5.15021 5.29538 5.38450 5.41885 5.45050 5.48456 5.50480 5.63317 5.67855 5.81961 5.90677 5.97564 6.01666 6.08135 6.10071 6.12058 6.20414 6.36797 6.78927 6.85377 7.07190 7.29969 7.37238 7.91245 8.31042 8.69446 9.20120 10.76261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.004507 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.855630 B = 6211.042418 C = 8056.375779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.160 3.840 3 N -0.280 5.280 4 O -0.083 6.083 5 C 0.294 3.706 6 N -0.467 5.467 7 C 0.208 3.792 8 C -0.046 4.046 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.150 4.150 12 C 0.025 3.975 13 C 0.494 3.506 14 O -0.494 6.494 15 O -0.326 6.326 16 C 0.191 3.809 17 H 0.050 0.950 18 C -0.172 4.172 19 C -0.529 4.529 20 H 0.089 0.911 21 C 0.083 3.917 22 N -0.884 5.884 23 Si 0.878 3.122 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.262 1.262 27 C -0.214 4.214 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.169 0.831 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.469 9.786 1.209 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 N -0.028 5.028 4 O -0.086 6.086 5 C 0.111 3.889 6 N -0.187 5.187 7 C 0.064 3.936 8 C -0.065 4.065 9 C -0.202 4.202 10 C -0.212 4.212 11 C -0.170 4.170 12 C 0.015 3.985 13 C 0.337 3.663 14 O -0.383 6.383 15 O -0.241 6.241 16 C 0.138 3.862 17 H 0.068 0.932 18 C -0.229 4.229 19 C -0.567 4.567 20 H 0.107 0.893 21 C -0.121 4.121 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.199 1.199 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.220 4.220 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.186 0.814 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.012 11.516 1.359 16.696 hybrid contribution -1.938 -0.583 0.041 2.024 sum 10.075 10.933 1.400 14.933 Atomic orbital electron populations 1.20677 0.83313 1.04324 1.05851 1.24589 0.98687 0.88667 0.90142 1.80084 0.84000 1.17063 1.21682 1.89240 1.23420 1.14712 1.81249 1.20223 0.88841 0.86479 0.93378 1.66307 1.32918 1.02371 1.17114 1.21404 0.94781 0.87878 0.89543 1.20219 0.93980 0.94069 0.98278 1.21852 1.02432 1.01884 0.94082 1.22011 1.02967 0.96117 1.00058 1.22367 0.90874 1.02668 1.01111 1.19219 0.92847 0.90679 0.95804 1.20796 0.87416 0.80656 0.77449 1.90799 1.47444 1.58826 1.41256 1.86627 1.36765 1.36048 1.64633 1.21086 0.73791 0.95504 0.95800 0.93219 1.22558 1.00550 0.98594 1.01204 1.20716 0.95945 0.86951 1.53055 0.89313 1.24706 0.98551 0.94838 0.94048 1.69819 1.27315 1.06460 1.48438 0.86997 0.83613 0.80116 0.78639 1.19888 1.21530 1.18675 1.21211 0.93656 0.93981 1.13130 0.87662 0.89915 0.88398 0.88337 0.91137 0.92130 0.91852 0.91799 0.91115 0.91176 0.81356 0.94393 0.92213 0.91562 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 8.65 36.00 0.31 -0.74 16 2 C 0.16 2.34 7.43 -80.24 -0.60 1.74 16 3 N -0.28 -4.29 12.81 34.84 0.45 -3.84 16 4 O -0.08 -1.33 12.06 7.65 0.09 -1.24 16 5 C 0.29 4.57 8.64 -16.42 -0.14 4.43 16 6 N -0.47 -6.67 10.25 -9.24 -0.09 -6.77 16 7 C 0.21 2.55 5.79 -82.58 -0.48 2.07 16 8 C -0.05 -0.42 3.21 -91.77 -0.29 -0.71 16 9 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 10 C -0.15 -1.25 8.62 37.16 0.32 -0.93 16 11 C -0.15 -2.00 8.80 -38.98 -0.34 -2.34 16 12 C 0.03 0.40 5.87 -104.47 -0.61 -0.22 16 13 C 0.49 8.94 7.23 34.68 0.25 9.19 16 14 O -0.49 -9.34 12.39 -19.23 -0.24 -9.58 16 15 O -0.33 -6.65 9.71 -40.48 -0.39 -7.05 16 16 C 0.19 4.38 2.16 -27.88 -0.06 4.32 16 17 H 0.05 1.19 6.21 -51.93 -0.32 0.86 16 18 C -0.17 -3.55 9.03 37.16 0.34 -3.21 16 19 C -0.53 -14.03 9.48 -34.44 -0.33 -14.35 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 22 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 23 Si 0.88 20.25 24.37 -169.99 -4.14 16.10 16 24 H -0.27 -6.04 6.87 56.52 0.39 -5.65 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16 27 C -0.21 -3.32 6.12 -104.82 -0.64 -3.96 16 28 H 0.11 1.28 7.88 -51.92 -0.41 0.87 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.33 6.23 -51.93 -0.32 1.01 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.60 6.46 -51.93 -0.34 0.27 16 38 H 0.17 2.04 6.28 -52.49 -0.33 1.71 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.27 3.28 -51.93 -0.17 1.10 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -29.58 347.71 -5.65 -35.23 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.30 Total: -0.27 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.03 Total: -3.40 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 1.13 Total: -35.04 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.54 Total: -17.87 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.14 Total: 16.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.58 -5.65 -35.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515066946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.645 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds