Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29813 * 126.33926 * 2 1 4 4 O 1.41327 * 109.72656 * 180.02562 * 3 2 1 5 5 C 1.34838 * 109.42232 * 359.97438 * 4 3 2 6 6 N 1.32447 * 133.09448 * 179.97438 * 5 4 3 7 7 C 1.31563 * 122.03596 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.16461 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47165 * 94.99347 * 8 7 6 10 10 C 1.52998 * 109.47046 * 214.99584 * 8 7 6 11 11 C 1.38594 * 121.66323 * 359.67053 * 7 6 5 12 12 C 1.39489 * 119.19485 * 0.62133 * 11 7 6 13 13 C 1.47892 * 121.11101 * 179.69537 * 12 11 7 14 14 O 1.21451 * 119.99784 * 144.86575 * 13 12 11 15 15 O 1.34696 * 119.99659 * 324.86406 * 13 12 11 16 16 C 1.45204 * 116.99782 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.46979 * 329.99934 * 16 15 13 18 18 C 1.52998 * 109.47365 * 89.99932 * 16 15 13 19 19 C 1.50707 * 109.47235 * 210.00136 * 16 15 13 20 20 H 1.07999 * 119.99590 * 0.02562 * 19 16 15 21 21 C 1.37872 * 120.00048 * 179.97438 * 19 16 15 22 22 N 1.31508 * 119.99680 * 180.02562 * 21 19 16 23 23 Si 1.86799 * 120.00051 * 359.97438 * 21 19 16 24 24 H 1.48506 * 109.46804 * 90.00138 * 23 21 19 25 25 H 1.48498 * 109.47204 * 210.00110 * 23 21 19 26 26 H 1.48501 * 109.47280 * 330.00148 * 23 21 19 27 27 C 1.40528 * 106.85783 * 0.02562 * 5 4 3 28 28 H 1.09008 * 109.46989 * 264.22287 * 1 2 3 29 29 H 1.09003 * 109.47220 * 24.21382 * 1 2 3 30 30 H 1.08998 * 109.47377 * 144.21864 * 1 2 3 31 31 H 1.09001 * 109.47274 * 334.99958 * 8 7 6 32 32 H 1.09000 * 109.47712 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47372 * 300.00226 * 9 8 7 34 34 H 1.09004 * 109.46915 * 59.99842 * 9 8 7 35 35 H 1.08994 * 109.46845 * 59.99971 * 10 8 7 36 36 H 1.08996 * 109.47287 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.46941 * 300.00101 * 10 8 7 38 38 H 1.08001 * 120.40207 * 180.32204 * 11 7 6 39 39 H 1.09005 * 109.46726 * 300.00231 * 18 16 15 40 40 H 1.09002 * 109.47146 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47070 * 60.00057 * 18 16 15 42 42 H 0.97007 * 120.00132 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6416 -0.0006 5 6 3.6966 -0.7051 -0.0004 6 7 4.7069 -1.5615 -0.0012 7 6 4.5182 -2.8635 -0.0013 8 6 5.7151 -3.7791 -0.0028 9 6 6.0455 -4.1890 1.4338 10 6 5.4014 -5.0274 -0.8300 11 6 3.2464 -3.4143 0.0062 12 6 2.1381 -2.5673 0.0009 13 6 0.7621 -3.1093 0.0018 14 8 -0.1189 -2.5287 0.6033 15 8 0.4860 -4.2469 -0.6645 16 6 -0.8861 -4.7201 -0.6207 17 1 -1.3455 -4.4157 0.3198 18 6 -1.6703 -4.1195 -1.7891 19 6 -0.9027 -6.2235 -0.7245 20 1 0.0253 -6.7687 -0.8140 21 6 -2.1023 -6.9027 -0.7041 22 7 -2.1166 -8.2146 -0.7942 23 14 -3.7071 -5.9596 -0.5471 24 1 -4.2113 -5.6121 -1.9000 25 1 -4.7096 -6.8017 0.1536 26 1 -3.4761 -4.7153 0.2298 27 6 2.3733 -1.1781 -0.0003 28 1 -0.3633 -0.1035 1.0225 29 1 -0.3634 0.9373 -0.4215 30 1 -0.3634 -0.8337 -0.6008 31 1 6.5691 -3.2600 -0.4379 32 1 6.9110 -4.8517 1.4328 33 1 6.2690 -3.2998 2.0231 34 1 5.1915 -4.7081 1.8690 35 1 5.1660 -4.7353 -1.8534 36 1 6.2669 -5.6898 -0.8307 37 1 4.5473 -5.5464 -0.3948 38 1 3.1150 -4.4863 0.0113 39 1 -1.6583 -3.0321 -1.7139 40 1 -2.7004 -4.4743 -1.7559 41 1 -1.2109 -4.4238 -2.7296 42 1 -2.9606 -8.6926 -0.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515066946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = -26.146883 kcal Electronic energy + Delta-G solvation = -26997.453333 eV Core-core repulsion = 23138.140794 eV Total energy + Delta-G solvation = -3859.312540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.44617 -41.54861 -40.51430 -37.96476 -36.25522 -35.99246 -35.34088 -33.90347 -32.53554 -30.93031 -29.85236 -28.09295 -27.37294 -26.78130 -25.43061 -24.13566 -22.63576 -21.52488 -21.17534 -19.38012 -19.20142 -18.99998 -18.43881 -17.84832 -17.80341 -17.21191 -16.60510 -16.06395 -15.63071 -15.32654 -15.02550 -14.90556 -14.85047 -14.58118 -14.47727 -14.35511 -14.27728 -14.01716 -13.67339 -13.53814 -13.41446 -12.95002 -12.83962 -12.68256 -12.52058 -12.32466 -12.21330 -12.06368 -12.00450 -11.86581 -11.71307 -11.58252 -11.25088 -10.92768 -10.86480 -10.82395 -10.24702 -8.42059 -6.51379 -1.22870 -0.50020 0.51248 0.72623 1.11271 1.27330 1.34684 1.42489 1.44452 2.15247 2.21780 2.38172 2.70837 2.91242 3.04103 3.07796 3.35144 3.59508 3.83409 3.95649 4.12566 4.16966 4.20686 4.27054 4.37727 4.40866 4.46682 4.49538 4.51218 4.55973 4.73152 4.83629 4.91145 4.97173 5.01255 5.04156 5.18339 5.19279 5.31922 5.37767 5.43390 5.46706 5.69965 6.06728 6.26940 6.51619 6.62170 7.12622 8.73303 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.004507 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.855630 B = 6211.042418 C = 8056.375779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.161 3.839 3 N -0.287 5.287 4 O -0.097 6.097 5 C 0.284 3.716 6 N -0.472 5.472 7 C 0.217 3.783 8 C -0.043 4.043 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.142 4.142 12 C 0.013 3.987 13 C 0.498 3.502 14 O -0.501 6.501 15 O -0.334 6.334 16 C 0.194 3.806 17 H 0.042 0.958 18 C -0.168 4.168 19 C -0.538 4.538 20 H 0.052 0.948 21 C 0.033 3.967 22 N -0.929 5.929 23 Si 0.935 3.065 24 H -0.253 1.253 25 H -0.288 1.288 26 H -0.250 1.250 27 C -0.225 4.225 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.180 0.820 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 10.795 1.125 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.019 4.019 3 N -0.037 5.037 4 O -0.099 6.099 5 C 0.101 3.899 6 N -0.193 5.193 7 C 0.073 3.927 8 C -0.062 4.062 9 C -0.201 4.201 10 C -0.211 4.211 11 C -0.162 4.162 12 C 0.002 3.998 13 C 0.341 3.659 14 O -0.390 6.390 15 O -0.250 6.250 16 C 0.141 3.859 17 H 0.060 0.940 18 C -0.225 4.225 19 C -0.576 4.576 20 H 0.070 0.930 21 C -0.167 4.167 22 N -0.567 5.567 23 Si 0.760 3.240 24 H -0.179 1.179 25 H -0.215 1.215 26 H -0.174 1.174 27 C -0.232 4.232 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.197 0.803 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.156 12.551 1.273 17.519 hybrid contribution -1.809 -0.962 0.096 2.051 sum 10.347 11.589 1.369 15.596 Atomic orbital electron populations 1.20745 0.81783 1.05291 1.06037 1.24929 0.99533 0.88147 0.89299 1.80067 0.83693 1.17314 1.22620 1.89204 1.24077 1.15080 1.81518 1.20398 0.89219 0.86465 0.93785 1.66433 1.32657 1.02922 1.17240 1.22004 0.95584 0.87579 0.87537 1.20382 0.92738 0.93721 0.99352 1.21870 1.03260 1.02033 0.92906 1.22033 1.03732 0.95891 0.99445 1.22594 0.90795 1.03039 0.99792 1.19073 0.91904 0.90997 0.97807 1.21081 0.88345 0.79760 0.76715 1.90786 1.48045 1.58794 1.41385 1.86603 1.35493 1.37446 1.65441 1.20802 0.75291 0.93414 0.96428 0.93986 1.22466 0.99796 1.00171 1.00101 1.20905 0.94765 0.89177 1.52738 0.92951 1.25504 1.02118 0.95550 0.93526 1.69946 1.28486 1.08264 1.49967 0.86064 0.79114 0.79127 0.79688 1.17870 1.21511 1.17363 1.21306 0.94012 0.94088 1.13758 0.87301 0.87318 0.89384 0.87222 0.88816 0.92737 0.92230 0.92261 0.88916 0.91822 0.80316 0.91736 0.92415 0.91256 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 8.65 71.24 0.62 -1.27 16 2 C 0.16 4.57 7.43 44.93 0.33 4.90 16 3 N -0.29 -8.59 12.81 -43.68 -0.56 -9.15 16 4 O -0.10 -3.07 12.06 29.76 0.36 -2.72 16 5 C 0.28 8.67 8.64 85.16 0.74 9.41 16 6 N -0.47 -13.03 10.25 -296.37 -3.04 -16.07 16 7 C 0.22 5.05 5.79 42.68 0.25 5.29 16 8 C -0.04 -0.68 3.21 -11.54 -0.04 -0.72 16 9 C -0.14 -1.96 9.18 71.98 0.66 -1.30 16 10 C -0.15 -2.19 8.62 71.98 0.62 -1.57 16 11 C -0.14 -3.66 8.80 22.66 0.20 -3.46 16 12 C 0.01 0.40 5.87 -19.77 -0.12 0.28 16 13 C 0.50 17.66 7.23 70.38 0.51 18.17 16 14 O -0.50 -18.40 12.39 20.00 0.25 -18.15 16 15 O -0.33 -13.55 9.71 -56.05 -0.54 -14.09 16 16 C 0.19 8.76 2.16 29.85 0.06 8.83 16 17 H 0.04 1.97 6.21 -2.39 -0.01 1.95 16 18 C -0.17 -6.61 9.03 71.98 0.65 -5.96 16 19 C -0.54 -28.96 9.48 25.60 0.24 -28.72 16 20 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 21 C 0.03 1.79 5.45 84.65 0.46 2.26 16 22 N -0.93 -53.86 13.96 21.44 0.30 -53.56 16 23 Si 0.93 40.84 24.37 68.60 1.67 42.51 16 24 H -0.25 -10.27 6.87 99.48 0.68 -9.59 16 25 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.25 -10.34 6.53 99.48 0.65 -9.69 16 27 C -0.23 -6.86 6.12 -19.99 -0.12 -6.99 16 28 H 0.11 2.47 7.88 -2.38 -0.02 2.45 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.25 6.23 -2.39 -0.01 2.24 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.00 6.46 -2.38 -0.02 0.98 16 38 H 0.18 4.20 6.28 -2.91 -0.02 4.18 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.06 2.28 3.28 -2.39 -0.01 2.28 16 41 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -63.88 347.71 4.48 -59.40 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.98 Total: 12.69 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.06 Total: -0.87 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.30 Total: -78.78 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: 0.06 Total: -34.96 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.67 Total: 42.51 kcal Total: -63.88 4.48 -59.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515066946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.256 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds