Wall clock time and date at job start Tue Mar 31 2020 13:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 112.94546 * 2 1 4 4 C 1.34774 * 119.99764 * 50.33270 * 3 2 1 5 5 O 1.21285 * 120.00155 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99776 * 180.27605 * 4 3 2 7 7 H 1.09001 * 109.47221 * 59.72614 * 6 4 3 8 8 C 1.50700 * 109.47237 * 299.72424 * 6 4 3 9 9 H 1.07994 * 120.00043 * 125.76798 * 8 6 4 10 10 C 1.37880 * 119.99958 * 305.77159 * 8 6 4 11 11 N 1.31518 * 119.99755 * 5.09267 * 10 8 6 12 12 Si 1.86797 * 120.00048 * 185.08837 * 10 8 6 13 13 H 1.48504 * 109.47164 * 60.00097 * 12 10 8 14 14 H 1.48506 * 109.47184 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47300 * 300.00229 * 12 10 8 16 16 C 1.50703 * 109.46999 * 179.72382 * 6 4 3 17 17 C 1.38235 * 120.00185 * 294.80536 * 16 6 4 18 18 C 1.38237 * 119.99843 * 179.78816 * 17 16 6 19 19 C 1.38232 * 119.99991 * 0.44209 * 18 17 16 20 20 C 1.38237 * 120.00283 * 359.81460 * 19 18 17 21 21 C 1.38234 * 119.99716 * 115.08370 * 16 6 4 22 22 C 1.53941 * 113.74276 * 131.59252 * 2 1 3 23 23 N 1.47813 * 86.03882 * 90.88069 * 22 2 1 24 24 C 1.34777 * 134.45944 * 204.64695 * 23 22 2 25 25 O 1.21508 * 120.00050 * 179.87013 * 24 23 22 26 26 O 1.34634 * 119.99970 * 359.86261 * 24 23 22 27 27 C 1.47583 * 91.04739 * 24.55101 * 23 22 2 28 28 H 1.09003 * 109.47130 * 69.66750 * 1 2 3 29 29 H 1.08997 * 109.47220 * 189.66664 * 1 2 3 30 30 H 1.08994 * 109.47044 * 309.66669 * 1 2 3 31 31 H 0.96994 * 120.00071 * 230.33205 * 3 2 1 32 32 H 0.96998 * 119.99578 * 180.02562 * 11 10 8 33 33 H 1.08000 * 119.99575 * 359.97438 * 17 16 6 34 34 H 1.07994 * 119.99349 * 180.27589 * 18 17 16 35 35 H 1.08001 * 119.99687 * 179.83149 * 19 18 17 36 36 H 1.07996 * 120.00164 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00328 * 359.97311 * 21 16 6 38 38 H 1.08993 * 113.77381 * 205.14684 * 22 2 1 39 39 H 1.09005 * 113.77128 * 336.54529 * 22 2 1 40 40 H 0.96699 * 117.00186 * 180.02562 * 26 24 23 41 41 H 1.09001 * 113.76579 * 221.14848 * 27 23 22 42 42 H 1.08997 * 113.76973 * 89.75833 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1011 1.3491 0.0000 4 6 1.6777 2.2601 0.8985 5 8 0.8242 1.9629 1.7073 6 6 2.2607 3.6497 0.8945 7 1 2.0732 4.1197 -0.0710 8 6 3.7464 3.5719 1.1351 9 1 4.4309 4.0368 0.4411 10 6 4.2317 2.9070 2.2412 11 7 3.4064 2.2560 3.0316 12 14 6.0613 2.9308 2.6170 13 1 6.5074 4.3331 2.8170 14 1 6.3234 2.1477 3.8513 15 1 6.8077 2.3312 1.4818 16 6 1.6174 4.4675 1.9847 17 6 0.2700 4.7690 1.9189 18 6 -0.3210 5.5154 2.9212 19 6 0.4374 5.9681 3.9845 20 6 1.7861 5.6711 4.0476 21 6 2.3761 4.9210 3.0475 22 6 2.1498 -0.9354 1.0539 23 7 2.1294 -1.9700 -0.0016 24 6 2.1013 -3.3175 -0.0023 25 8 2.0875 -3.9244 -1.0548 26 8 2.0886 -3.9911 1.1634 27 6 2.1498 -0.9354 -1.0539 28 1 -0.3633 0.3571 -0.9637 29 1 -0.3633 -1.0130 0.1726 30 1 -0.3633 0.6559 0.7910 31 1 2.7840 1.5867 -0.6466 32 1 3.7478 1.7886 3.8100 33 1 -0.3216 4.4188 1.0860 34 1 -1.3746 5.7471 2.8720 35 1 -0.0237 6.5536 4.7661 36 1 2.3787 6.0251 4.8782 37 1 3.4297 4.6889 3.0969 38 1 3.1532 -0.6441 1.3641 39 1 1.4890 -1.1501 1.8938 40 1 2.0688 -4.9565 1.1124 41 1 1.4890 -1.1501 -1.8938 42 1 3.1532 -0.6441 -1.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571030445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:38 Heat of formation + Delta-G solvation = -47.309010 kcal Electronic energy + Delta-G solvation = -27477.643773 eV Core-core repulsion = 23617.413575 eV Total energy + Delta-G solvation = -3860.230198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68811 -39.29375 -38.46732 -37.10042 -35.77848 -33.79009 -33.01215 -30.98475 -29.82328 -29.69177 -27.21952 -27.03754 -26.17560 -24.05221 -21.91786 -21.29330 -20.69125 -19.40819 -18.79606 -17.97661 -17.30119 -16.96166 -16.45815 -15.94718 -15.29263 -14.97760 -14.94472 -14.62661 -14.14262 -13.79063 -13.48011 -13.36940 -13.09842 -12.91506 -12.66929 -12.43008 -12.22766 -11.95140 -11.86764 -11.65585 -11.54712 -11.39221 -11.33990 -10.99210 -10.85971 -10.64104 -10.56324 -10.31218 -10.10825 -9.78796 -9.44093 -8.80339 -8.67232 -8.29132 -8.12356 -7.81313 -7.45752 -6.25170 -4.39189 2.19408 2.45107 2.54836 2.89137 3.14238 3.22800 3.24520 4.01072 4.12647 4.16295 4.26196 4.69806 4.93562 4.97510 5.00788 5.19424 5.41458 5.62623 5.72522 5.79013 5.88337 5.96731 5.98642 6.02740 6.09239 6.20659 6.30218 6.51565 6.57196 6.59880 6.69546 6.76696 6.81729 7.03768 7.17044 7.42723 7.45656 7.56468 7.63489 7.67864 7.73886 8.08685 8.20719 8.39987 8.52163 8.72713 9.26020 9.64323 10.75180 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.004586 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.510460 B = 6103.987426 C = 7216.874573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.155 3.845 3 N -0.724 5.724 4 C 0.563 3.437 5 O -0.539 6.539 6 C 0.056 3.944 7 H 0.056 0.944 8 C -0.539 4.539 9 H 0.067 0.933 10 C 0.073 3.927 11 N -0.844 5.844 12 Si 0.884 3.116 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.017 4.017 17 C -0.114 4.114 18 C -0.143 4.143 19 C -0.143 4.143 20 C -0.148 4.148 21 C -0.059 4.059 22 C 0.110 3.890 23 N -0.627 5.627 24 C 0.688 3.312 25 O -0.590 6.590 26 O -0.523 6.523 27 C 0.130 3.870 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.399 0.601 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.424 0.576 41 H 0.089 0.911 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -2.470 -4.107 5.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.067 3.933 3 N -0.377 5.377 4 C 0.353 3.647 5 O -0.414 6.414 6 C 0.035 3.965 7 H 0.074 0.926 8 C -0.576 4.576 9 H 0.085 0.915 10 C -0.134 4.134 11 N -0.477 5.477 12 Si 0.711 3.289 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.018 4.018 17 C -0.132 4.132 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.077 4.077 22 C -0.013 4.013 23 N -0.370 5.370 24 C 0.443 3.557 25 O -0.481 6.481 26 O -0.332 6.332 27 C 0.008 3.992 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.283 0.717 41 H 0.108 0.892 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.307 -2.816 -3.553 5.611 hybrid contribution 1.541 -0.858 0.241 1.780 sum -1.766 -3.674 -3.312 5.252 Atomic orbital electron populations 1.21945 0.91906 1.02775 1.03834 1.21771 0.94682 0.82967 0.93927 1.45712 1.43955 1.09984 1.38080 1.20882 0.79092 0.87161 0.77611 1.90473 1.33028 1.80653 1.37268 1.17909 0.96248 0.88555 0.93826 0.92558 1.20720 0.89291 1.37532 1.10087 0.91473 1.25027 0.97596 0.94690 0.96124 1.70047 1.33903 1.29446 1.14263 0.86780 0.85584 0.78564 0.78003 1.19857 1.21192 1.20056 1.19815 0.91837 0.94029 0.96128 1.20873 0.95062 0.98667 0.98620 1.20780 0.98422 1.01100 0.95776 1.20800 0.94604 1.02335 0.98390 1.21074 0.94859 1.01293 0.99428 1.21429 1.01587 0.92990 0.91697 1.23855 1.02423 0.82249 0.92742 1.48378 1.75156 1.00492 1.12974 1.17109 0.75746 0.81491 0.81369 1.91020 1.57767 1.67435 1.31872 1.84233 1.88508 1.26636 1.33843 1.23568 1.01694 0.81802 0.92134 0.92523 0.92629 0.88094 0.76639 0.92237 0.88028 0.88013 0.88138 0.88021 0.84608 0.88628 0.89482 0.71696 0.89233 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.01 37.16 0.33 -1.90 16 2 C 0.16 2.40 1.28 -134.03 -0.17 2.23 16 3 N -0.72 -12.35 5.24 -49.07 -0.26 -12.60 16 4 C 0.56 11.71 5.13 -10.99 -0.06 11.65 16 5 O -0.54 -12.67 12.78 5.55 0.07 -12.60 16 6 C 0.06 1.20 2.67 -94.07 -0.25 0.94 16 7 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 8 C -0.54 -12.03 7.62 -34.44 -0.26 -12.29 16 9 H 0.07 1.47 7.82 -52.49 -0.41 1.06 16 10 C 0.07 1.68 3.19 -17.82 -0.06 1.62 16 11 N -0.84 -20.72 10.41 55.43 0.58 -20.14 16 12 Si 0.88 18.53 29.54 -169.99 -5.02 13.51 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 16 C -0.02 -0.38 4.50 -104.62 -0.47 -0.85 16 17 C -0.11 -2.34 8.75 -39.58 -0.35 -2.69 16 18 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 19 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 20 C -0.15 -3.00 10.05 -39.58 -0.40 -3.39 16 21 C -0.06 -1.33 8.00 -39.58 -0.32 -1.65 16 22 C 0.11 1.84 8.23 -2.84 -0.02 1.81 16 23 N -0.63 -9.66 3.47 -183.77 -0.64 -10.30 16 24 C 0.69 10.96 9.29 54.06 0.50 11.46 16 25 O -0.59 -10.76 17.86 -19.28 -0.34 -11.11 16 26 O -0.52 -6.80 13.42 -40.31 -0.54 -7.34 16 27 C 0.13 1.73 8.11 -2.97 -0.02 1.71 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 30 H 0.10 1.84 5.58 -51.93 -0.29 1.55 16 31 H 0.40 6.11 8.53 -40.82 -0.35 5.76 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.14 3.23 4.97 -52.49 -0.26 2.97 16 38 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.09 1.53 8.10 -51.93 -0.42 1.11 16 40 H 0.42 3.23 9.11 45.56 0.42 3.64 16 41 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.09 1.12 8.12 -51.93 -0.42 0.69 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -29.71 353.26 -7.83 -37.54 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.34 Total: 2.46 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.32 Total: -43.05 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.81 Total: -31.04 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.71 -7.83 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571030445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.765 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds