Wall clock time and date at job start Tue Mar 31 2020 13:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 112.94546 * 2 1 4 4 C 1.34774 * 119.99764 * 50.33270 * 3 2 1 5 5 O 1.21285 * 120.00155 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99776 * 180.27605 * 4 3 2 7 7 H 1.09001 * 109.47221 * 59.72614 * 6 4 3 8 8 C 1.50700 * 109.47237 * 299.72424 * 6 4 3 9 9 H 1.07994 * 120.00043 * 125.76798 * 8 6 4 10 10 C 1.37880 * 119.99958 * 305.77159 * 8 6 4 11 11 N 1.31518 * 119.99755 * 5.09267 * 10 8 6 12 12 Si 1.86797 * 120.00048 * 185.08837 * 10 8 6 13 13 H 1.48504 * 109.47164 * 60.00097 * 12 10 8 14 14 H 1.48506 * 109.47184 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47300 * 300.00229 * 12 10 8 16 16 C 1.50703 * 109.46999 * 179.72382 * 6 4 3 17 17 C 1.38235 * 120.00185 * 294.80536 * 16 6 4 18 18 C 1.38237 * 119.99843 * 179.78816 * 17 16 6 19 19 C 1.38232 * 119.99991 * 0.44209 * 18 17 16 20 20 C 1.38237 * 120.00283 * 359.81460 * 19 18 17 21 21 C 1.38234 * 119.99716 * 115.08370 * 16 6 4 22 22 C 1.53941 * 113.74276 * 131.59252 * 2 1 3 23 23 N 1.47813 * 86.03882 * 90.88069 * 22 2 1 24 24 C 1.34777 * 134.45944 * 204.64695 * 23 22 2 25 25 O 1.21508 * 120.00050 * 179.87013 * 24 23 22 26 26 O 1.34634 * 119.99970 * 359.86261 * 24 23 22 27 27 C 1.47583 * 91.04739 * 24.55101 * 23 22 2 28 28 H 1.09003 * 109.47130 * 69.66750 * 1 2 3 29 29 H 1.08997 * 109.47220 * 189.66664 * 1 2 3 30 30 H 1.08994 * 109.47044 * 309.66669 * 1 2 3 31 31 H 0.96994 * 120.00071 * 230.33205 * 3 2 1 32 32 H 0.96998 * 119.99578 * 180.02562 * 11 10 8 33 33 H 1.08000 * 119.99575 * 359.97438 * 17 16 6 34 34 H 1.07994 * 119.99349 * 180.27589 * 18 17 16 35 35 H 1.08001 * 119.99687 * 179.83149 * 19 18 17 36 36 H 1.07996 * 120.00164 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00328 * 359.97311 * 21 16 6 38 38 H 1.08993 * 113.77381 * 205.14684 * 22 2 1 39 39 H 1.09005 * 113.77128 * 336.54529 * 22 2 1 40 40 H 0.96699 * 117.00186 * 180.02562 * 26 24 23 41 41 H 1.09001 * 113.76579 * 221.14848 * 27 23 22 42 42 H 1.08997 * 113.76973 * 89.75833 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1011 1.3491 0.0000 4 6 1.6777 2.2601 0.8985 5 8 0.8242 1.9629 1.7073 6 6 2.2607 3.6497 0.8945 7 1 2.0732 4.1197 -0.0710 8 6 3.7464 3.5719 1.1351 9 1 4.4309 4.0368 0.4411 10 6 4.2317 2.9070 2.2412 11 7 3.4064 2.2560 3.0316 12 14 6.0613 2.9308 2.6170 13 1 6.5074 4.3331 2.8170 14 1 6.3234 2.1477 3.8513 15 1 6.8077 2.3312 1.4818 16 6 1.6174 4.4675 1.9847 17 6 0.2700 4.7690 1.9189 18 6 -0.3210 5.5154 2.9212 19 6 0.4374 5.9681 3.9845 20 6 1.7861 5.6711 4.0476 21 6 2.3761 4.9210 3.0475 22 6 2.1498 -0.9354 1.0539 23 7 2.1294 -1.9700 -0.0016 24 6 2.1013 -3.3175 -0.0023 25 8 2.0875 -3.9244 -1.0548 26 8 2.0886 -3.9911 1.1634 27 6 2.1498 -0.9354 -1.0539 28 1 -0.3633 0.3571 -0.9637 29 1 -0.3633 -1.0130 0.1726 30 1 -0.3633 0.6559 0.7910 31 1 2.7840 1.5867 -0.6466 32 1 3.7478 1.7886 3.8100 33 1 -0.3216 4.4188 1.0860 34 1 -1.3746 5.7471 2.8720 35 1 -0.0237 6.5536 4.7661 36 1 2.3787 6.0251 4.8782 37 1 3.4297 4.6889 3.0969 38 1 3.1532 -0.6441 1.3641 39 1 1.4890 -1.1501 1.8938 40 1 2.0688 -4.9565 1.1124 41 1 1.4890 -1.1501 -1.8938 42 1 3.1532 -0.6441 -1.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571030445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:36 Heat of formation + Delta-G solvation = -67.260216 kcal Electronic energy + Delta-G solvation = -27478.508922 eV Core-core repulsion = 23617.413575 eV Total energy + Delta-G solvation = -3861.095347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.95163 -40.69088 -39.88889 -38.60927 -36.97341 -35.49196 -34.45160 -32.64520 -31.26724 -31.15753 -28.82267 -28.25447 -27.41765 -25.75942 -23.27724 -22.85249 -22.07322 -20.89983 -20.17865 -19.19928 -18.63158 -18.52251 -17.75762 -17.39847 -16.94366 -16.58402 -16.25910 -15.90774 -15.66685 -15.38112 -14.86638 -14.67430 -14.44689 -14.42794 -14.09040 -13.99829 -13.80288 -13.46096 -13.19139 -13.00514 -12.90185 -12.77043 -12.63414 -12.59348 -12.53849 -12.15446 -11.89957 -11.77817 -11.67823 -11.38906 -11.11011 -10.43044 -10.07495 -9.91836 -9.58526 -9.38159 -9.03883 -8.03788 -6.19508 0.88076 0.97525 1.07950 1.45021 1.51243 1.53654 1.65138 2.39354 2.54199 2.77650 2.99336 3.23545 3.39445 3.44758 3.70844 4.00457 4.31957 4.36111 4.39291 4.51805 4.53261 4.53616 4.61760 4.69319 4.76886 4.85613 4.93920 4.99120 5.04924 5.17406 5.22727 5.41630 5.49046 5.61587 5.63782 5.76092 5.91596 5.99992 6.02894 6.07078 6.44308 6.47300 6.57388 6.83501 7.19758 7.27910 7.47245 8.08062 8.94669 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.004586 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.510460 B = 6103.987426 C = 7216.874573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.154 3.846 3 N -0.713 5.713 4 C 0.565 3.435 5 O -0.569 6.569 6 C 0.047 3.953 7 H 0.069 0.931 8 C -0.534 4.534 9 H 0.069 0.931 10 C 0.048 3.952 11 N -0.865 5.865 12 Si 0.928 3.072 13 H -0.275 1.275 14 H -0.298 1.298 15 H -0.269 1.269 16 C -0.037 4.037 17 C -0.127 4.127 18 C -0.143 4.143 19 C -0.142 4.142 20 C -0.158 4.158 21 C -0.086 4.086 22 C 0.113 3.887 23 N -0.627 5.627 24 C 0.688 3.312 25 O -0.614 6.614 26 O -0.521 6.521 27 C 0.138 3.862 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.409 0.591 32 H 0.257 0.743 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.445 0.555 41 H 0.110 0.890 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -2.289 -4.893 6.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.066 3.934 3 N -0.366 5.366 4 C 0.354 3.646 5 O -0.447 6.447 6 C 0.025 3.975 7 H 0.087 0.913 8 C -0.572 4.572 9 H 0.087 0.913 10 C -0.156 4.156 11 N -0.500 5.500 12 Si 0.755 3.245 13 H -0.200 1.200 14 H -0.225 1.225 15 H -0.194 1.194 16 C -0.038 4.038 17 C -0.145 4.145 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.176 4.176 21 C -0.104 4.104 22 C -0.011 4.011 23 N -0.370 5.370 24 C 0.444 3.556 25 O -0.507 6.507 26 O -0.333 6.333 27 C 0.017 3.983 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.245 0.755 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.308 0.692 41 H 0.128 0.872 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.769 -2.651 -4.372 6.352 hybrid contribution 1.661 -0.895 0.520 1.957 sum -2.108 -3.546 -3.852 5.644 Atomic orbital electron populations 1.21821 0.91543 1.02422 1.03805 1.21857 0.94927 0.82046 0.94583 1.45537 1.43671 1.10177 1.37259 1.20723 0.78729 0.87400 0.77706 1.90463 1.34445 1.81165 1.38665 1.18022 0.95725 0.89276 0.94450 0.91303 1.20881 0.90050 1.36551 1.09711 0.91296 1.25388 0.99596 0.94582 0.96082 1.70179 1.34726 1.30638 1.14432 0.86084 0.83033 0.78034 0.77325 1.20003 1.22477 1.19416 1.19963 0.92771 0.94624 0.96483 1.21053 0.94636 0.99194 0.99617 1.21187 1.00034 0.99841 0.95003 1.21181 0.93937 1.01878 0.99039 1.21341 0.96027 1.00892 0.99336 1.21392 1.00949 0.94908 0.93195 1.23661 1.01176 0.83329 0.92931 1.48414 1.74951 1.00593 1.13058 1.17166 0.75342 0.81530 0.81579 1.91006 1.58974 1.67833 1.32859 1.84218 1.87947 1.28634 1.32511 1.23661 1.02920 0.80046 0.91633 0.90478 0.92073 0.91090 0.75543 0.93357 0.87326 0.84885 0.84725 0.86355 0.86642 0.90339 0.91011 0.69168 0.87187 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.01 71.98 0.65 -3.42 16 2 C 0.15 4.61 1.28 5.36 0.01 4.62 16 3 N -0.71 -23.84 5.24 -427.56 -2.24 -26.08 16 4 C 0.56 23.51 5.13 87.66 0.45 23.96 16 5 O -0.57 -27.14 12.78 -3.04 -0.04 -27.17 16 6 C 0.05 1.99 2.67 -13.03 -0.03 1.96 16 7 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 8 C -0.53 -23.86 7.62 25.60 0.20 -23.67 16 9 H 0.07 2.99 7.82 -2.91 -0.02 2.97 16 10 C 0.05 2.23 3.19 84.65 0.27 2.50 16 11 N -0.87 -43.42 10.41 21.45 0.22 -43.20 16 12 Si 0.93 38.32 29.54 68.60 2.03 40.35 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 14 H -0.30 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 16 C -0.04 -1.67 4.50 -19.87 -0.09 -1.76 16 17 C -0.13 -5.12 8.75 22.27 0.19 -4.93 16 18 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 19 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 20 C -0.16 -6.26 10.05 22.27 0.22 -6.03 16 21 C -0.09 -3.92 8.00 22.27 0.18 -3.74 16 22 C 0.11 3.74 8.23 86.44 0.71 4.45 16 23 N -0.63 -18.52 3.47 -965.74 -3.35 -21.87 16 24 C 0.69 20.95 9.29 129.79 1.21 22.16 16 25 O -0.61 -21.40 17.86 19.82 0.35 -21.05 16 26 O -0.52 -12.84 13.42 -55.44 -0.74 -13.58 16 27 C 0.14 3.39 8.11 86.49 0.70 4.09 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 30 H 0.07 2.59 5.58 -2.39 -0.01 2.58 16 31 H 0.41 11.99 8.53 -92.71 -0.79 11.20 16 32 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 33 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.12 5.62 4.97 -2.91 -0.01 5.61 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.07 2.58 8.10 -2.38 -0.02 2.56 16 40 H 0.45 6.03 9.11 -74.06 -0.67 5.35 16 41 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 42 H 0.11 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -63.73 353.26 0.94 -62.79 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.40 Total: 39.32 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.11 Total: 10.49 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.37 Total: -91.15 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -0.43 Total: -61.80 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -63.73 0.94 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571030445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.473 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds