Wall clock time and date at job start Tue Mar 31 2020 13:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 112.94552 * 2 1 4 4 C 1.34775 * 120.00026 * 50.33285 * 3 2 1 5 5 O 1.21285 * 119.99734 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00261 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.47277 * 300.00131 * 6 4 3 8 8 C 1.50705 * 109.47008 * 59.99877 * 6 4 3 9 9 H 1.08004 * 119.99509 * 26.77751 * 8 6 4 10 10 C 1.37868 * 120.00282 * 206.77127 * 8 6 4 11 11 N 1.31512 * 119.99990 * 353.46678 * 10 8 6 12 12 Si 1.86800 * 119.99992 * 173.46377 * 10 8 6 13 13 H 1.48502 * 109.47271 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47150 * 299.99969 * 12 10 8 15 15 H 1.48495 * 109.47076 * 60.00591 * 12 10 8 16 16 C 1.50699 * 109.47436 * 180.02562 * 6 4 3 17 17 C 1.38236 * 119.99664 * 292.97059 * 16 6 4 18 18 C 1.38235 * 119.99792 * 179.80789 * 17 16 6 19 19 C 1.38237 * 119.99868 * 0.39880 * 18 17 16 20 20 C 1.38229 * 120.00191 * 359.85851 * 19 18 17 21 21 C 1.38233 * 120.00070 * 113.24645 * 16 6 4 22 22 C 1.53943 * 113.74423 * 131.59182 * 2 1 3 23 23 N 1.47816 * 86.03592 * 90.87996 * 22 2 1 24 24 C 1.34777 * 134.45817 * 204.64316 * 23 22 2 25 25 O 1.21505 * 120.00023 * 179.86956 * 24 23 22 26 26 O 1.34637 * 119.99950 * 359.86743 * 24 23 22 27 27 C 1.47579 * 91.04850 * 24.55535 * 23 22 2 28 28 H 1.08995 * 109.46787 * 69.66268 * 1 2 3 29 29 H 1.09001 * 109.46999 * 189.66755 * 1 2 3 30 30 H 1.09003 * 109.46878 * 309.66298 * 1 2 3 31 31 H 0.97006 * 119.99843 * 230.33490 * 3 2 1 32 32 H 0.97001 * 120.00189 * 354.54999 * 11 10 8 33 33 H 1.08000 * 120.00151 * 359.97438 * 17 16 6 34 34 H 1.08002 * 120.00512 * 180.23012 * 18 17 16 35 35 H 1.07998 * 120.00046 * 179.83137 * 19 18 17 36 36 H 1.08000 * 120.00749 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00044 * 359.97438 * 21 16 6 38 38 H 1.08999 * 113.77072 * 205.14355 * 22 2 1 39 39 H 1.09003 * 113.76833 * 336.54609 * 22 2 1 40 40 H 0.96696 * 116.99927 * 179.97438 * 26 24 23 41 41 H 1.09005 * 113.76480 * 221.14953 * 27 23 22 42 42 H 1.08998 * 113.77607 * 89.75407 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1011 1.3491 0.0000 4 6 1.6778 2.2601 0.8985 5 8 0.8242 1.9629 1.7073 6 6 2.2656 3.6477 0.8989 7 1 3.3402 3.5870 1.0718 8 6 2.0074 4.3030 -0.4334 9 1 1.1549 4.0048 -1.0257 10 6 2.8593 5.2833 -0.8962 11 7 3.8210 5.7375 -0.1226 12 14 2.6477 5.9662 -2.6219 13 1 3.6825 7.0007 -2.8753 14 1 2.7942 4.8677 -3.6104 15 1 1.2985 6.5728 -2.7522 16 6 1.6267 4.4637 1.9929 17 6 0.2889 4.8023 1.9110 18 6 -0.2982 5.5475 2.9164 19 6 0.4545 5.9610 3.9997 20 6 1.7934 5.6269 4.0790 21 6 2.3796 4.8784 3.0754 22 6 2.1498 -0.9354 1.0539 23 7 2.1294 -1.9700 -0.0017 24 6 2.1013 -3.3175 -0.0023 25 8 2.0874 -3.9243 -1.0549 26 8 2.0887 -3.9911 1.1634 27 6 2.1499 -0.9354 -1.0539 28 1 -0.3633 0.3572 -0.9636 29 1 -0.3633 -1.0131 0.1726 30 1 -0.3633 0.6560 0.7911 31 1 2.7840 1.5867 -0.6467 32 1 3.8829 5.4414 0.7990 33 1 -0.2982 4.4825 1.0628 34 1 -1.3442 5.8090 2.8544 35 1 -0.0036 6.5455 4.7839 36 1 2.3816 5.9503 4.9251 37 1 3.4257 4.6173 3.1374 38 1 3.1533 -0.6440 1.3641 39 1 1.4890 -1.1500 1.8938 40 1 2.0682 -4.9565 1.1123 41 1 1.4890 -1.1500 -1.8938 42 1 3.1533 -0.6440 -1.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571030446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:43 Heat of formation + Delta-G solvation = -61.383630 kcal Electronic energy + Delta-G solvation = -26845.633938 eV Core-core repulsion = 22984.793418 eV Total energy + Delta-G solvation = -3860.840520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98935 -39.61998 -38.71754 -37.54137 -35.98487 -34.05568 -33.45806 -31.00018 -30.11930 -30.07875 -27.29750 -27.13149 -26.51002 -23.82294 -22.22691 -21.68793 -21.00710 -19.72402 -19.16539 -18.26279 -17.53702 -17.44649 -16.71927 -16.19225 -15.86907 -15.26627 -14.93974 -14.59999 -14.35187 -13.89035 -13.78258 -13.66727 -13.47474 -13.27067 -12.81421 -12.66616 -12.41666 -12.22510 -12.11777 -11.90542 -11.81055 -11.63759 -11.58613 -11.09169 -10.94645 -10.80213 -10.69179 -10.35998 -10.25634 -10.19751 -9.10680 -9.05574 -8.82629 -8.67585 -8.63474 -8.08523 -7.71823 -6.61370 -4.40073 1.94012 2.22375 2.27257 2.68068 3.30610 3.31459 3.41050 3.51419 3.74726 3.89545 4.27795 4.35782 4.65418 4.69957 4.93834 5.10302 5.18098 5.37694 5.41016 5.59423 5.61030 5.62843 5.68417 5.79406 5.83245 5.96548 6.01893 6.10480 6.32685 6.40055 6.40478 6.47580 6.57464 6.80997 6.90551 6.95644 7.23528 7.29418 7.41615 7.50932 7.75429 7.88020 8.09659 8.14887 8.19221 8.54209 8.97874 9.32561 10.76047 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.004089 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.659007 B = 6845.901724 C = 8288.666353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.148 3.852 3 N -0.717 5.717 4 C 0.540 3.460 5 O -0.554 6.554 6 C 0.044 3.956 7 H 0.065 0.935 8 C -0.595 4.595 9 H 0.059 0.941 10 C 0.033 3.967 11 N -0.893 5.893 12 Si 1.066 2.934 13 H -0.282 1.282 14 H -0.285 1.285 15 H -0.286 1.286 16 C -0.021 4.021 17 C -0.078 4.078 18 C -0.132 4.132 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.127 4.127 22 C 0.102 3.898 23 N -0.626 5.626 24 C 0.690 3.310 25 O -0.583 6.583 26 O -0.524 6.524 27 C 0.131 3.869 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.410 0.590 32 H 0.275 0.725 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.427 0.573 41 H 0.095 0.905 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -9.690 2.356 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.059 3.941 3 N -0.370 5.370 4 C 0.330 3.670 5 O -0.432 6.432 6 C 0.023 3.977 7 H 0.083 0.917 8 C -0.632 4.632 9 H 0.077 0.923 10 C -0.174 4.174 11 N -0.526 5.526 12 Si 0.893 3.107 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.213 1.213 16 C -0.022 4.022 17 C -0.096 4.096 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.021 4.021 23 N -0.369 5.369 24 C 0.444 3.556 25 O -0.473 6.473 26 O -0.333 6.333 27 C 0.010 3.990 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.286 0.714 41 H 0.113 0.887 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.370 -8.874 1.588 9.321 hybrid contribution -0.245 -1.510 0.799 1.726 sum -2.615 -10.384 2.387 10.971 Atomic orbital electron populations 1.21953 0.91318 1.02881 1.04466 1.21962 0.95356 0.82342 0.94435 1.45847 1.43719 1.09997 1.37482 1.21323 0.80880 0.86756 0.78054 1.90537 1.32612 1.80552 1.39457 1.18171 0.96795 0.87411 0.95338 0.91705 1.21557 1.15468 1.24662 1.01527 0.92317 1.25835 0.92547 0.93752 1.05272 1.70781 1.31395 1.41812 1.08620 0.83572 0.76322 0.76627 0.74153 1.20677 1.21132 1.21261 1.20102 0.93483 0.95807 0.92792 1.20786 0.94923 0.96514 0.97361 1.20993 0.99030 0.99882 0.95159 1.20832 0.94560 1.02339 0.98618 1.20889 0.95065 0.99946 0.98761 1.20970 0.99285 1.00003 0.94315 1.23869 1.01852 0.83210 0.93213 1.48227 1.75671 1.00533 1.12491 1.17064 0.75711 0.81312 0.81466 1.91049 1.57198 1.67218 1.31851 1.84205 1.88489 1.26877 1.33771 1.23581 1.01982 0.81252 0.92218 0.91907 0.92268 0.88197 0.75428 0.91370 0.86960 0.87423 0.87532 0.87409 0.87323 0.89093 0.89050 0.71413 0.88697 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.01 37.16 0.33 -1.74 16 2 C 0.15 1.97 1.28 -134.03 -0.17 1.80 16 3 N -0.72 -11.16 5.23 -49.07 -0.26 -11.42 16 4 C 0.54 10.47 6.81 -10.99 -0.07 10.40 16 5 O -0.55 -11.63 13.08 5.55 0.07 -11.56 16 6 C 0.04 0.96 1.92 -94.08 -0.18 0.78 16 7 H 0.07 1.46 6.82 -51.93 -0.35 1.11 16 8 C -0.59 -13.95 7.42 -34.44 -0.26 -14.21 16 9 H 0.06 1.40 7.82 -52.48 -0.41 0.99 16 10 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 11 N -0.89 -23.67 13.56 55.43 0.75 -22.92 16 12 Si 1.07 22.32 29.91 -169.99 -5.08 17.24 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.29 -5.60 7.11 56.52 0.40 -5.19 16 15 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 16 C -0.02 -0.46 4.03 -104.63 -0.42 -0.88 16 17 C -0.08 -1.66 8.36 -39.58 -0.33 -1.99 16 18 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 19 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 20 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 21 C -0.13 -2.61 9.25 -39.58 -0.37 -2.98 16 22 C 0.10 1.30 8.23 -2.84 -0.02 1.28 16 23 N -0.63 -8.06 3.47 -183.78 -0.64 -8.70 16 24 C 0.69 9.44 9.29 54.06 0.50 9.94 16 25 O -0.58 -9.63 17.86 -19.28 -0.34 -9.98 16 26 O -0.52 -5.51 13.42 -40.32 -0.54 -6.05 16 27 C 0.13 1.53 8.11 -2.97 -0.02 1.50 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.76 8.00 -51.93 -0.42 0.35 16 30 H 0.10 1.67 5.59 -51.93 -0.29 1.38 16 31 H 0.41 5.99 8.53 -40.82 -0.35 5.64 16 32 H 0.27 7.21 6.30 -40.82 -0.26 6.95 16 33 H 0.11 2.45 7.86 -52.49 -0.41 2.03 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.09 7.96 -52.49 -0.42 1.68 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.43 2.33 9.11 45.56 0.42 2.75 16 41 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.10 0.98 8.12 -51.93 -0.42 0.55 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -31.12 359.89 -7.58 -38.70 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.66 Total: 13.27 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.30 Total: -4.02 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.14 Total: -43.03 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.81 Total: -27.58 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.08 Total: 17.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.12 -7.58 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571030446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.680 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds