Wall clock time and date at job start Tue Mar 31 2020 13:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 112.94552 * 2 1 4 4 C 1.34775 * 120.00026 * 50.33285 * 3 2 1 5 5 O 1.21285 * 119.99734 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00261 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.47277 * 300.00131 * 6 4 3 8 8 C 1.50705 * 109.47008 * 59.99877 * 6 4 3 9 9 H 1.08004 * 119.99509 * 26.77751 * 8 6 4 10 10 C 1.37868 * 120.00282 * 206.77127 * 8 6 4 11 11 N 1.31512 * 119.99990 * 353.46678 * 10 8 6 12 12 Si 1.86800 * 119.99992 * 173.46377 * 10 8 6 13 13 H 1.48502 * 109.47271 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47150 * 299.99969 * 12 10 8 15 15 H 1.48495 * 109.47076 * 60.00591 * 12 10 8 16 16 C 1.50699 * 109.47436 * 180.02562 * 6 4 3 17 17 C 1.38236 * 119.99664 * 292.97059 * 16 6 4 18 18 C 1.38235 * 119.99792 * 179.80789 * 17 16 6 19 19 C 1.38237 * 119.99868 * 0.39880 * 18 17 16 20 20 C 1.38229 * 120.00191 * 359.85851 * 19 18 17 21 21 C 1.38233 * 120.00070 * 113.24645 * 16 6 4 22 22 C 1.53943 * 113.74423 * 131.59182 * 2 1 3 23 23 N 1.47816 * 86.03592 * 90.87996 * 22 2 1 24 24 C 1.34777 * 134.45817 * 204.64316 * 23 22 2 25 25 O 1.21505 * 120.00023 * 179.86956 * 24 23 22 26 26 O 1.34637 * 119.99950 * 359.86743 * 24 23 22 27 27 C 1.47579 * 91.04850 * 24.55535 * 23 22 2 28 28 H 1.08995 * 109.46787 * 69.66268 * 1 2 3 29 29 H 1.09001 * 109.46999 * 189.66755 * 1 2 3 30 30 H 1.09003 * 109.46878 * 309.66298 * 1 2 3 31 31 H 0.97006 * 119.99843 * 230.33490 * 3 2 1 32 32 H 0.97001 * 120.00189 * 354.54999 * 11 10 8 33 33 H 1.08000 * 120.00151 * 359.97438 * 17 16 6 34 34 H 1.08002 * 120.00512 * 180.23012 * 18 17 16 35 35 H 1.07998 * 120.00046 * 179.83137 * 19 18 17 36 36 H 1.08000 * 120.00749 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00044 * 359.97438 * 21 16 6 38 38 H 1.08999 * 113.77072 * 205.14355 * 22 2 1 39 39 H 1.09003 * 113.76833 * 336.54609 * 22 2 1 40 40 H 0.96696 * 116.99927 * 179.97438 * 26 24 23 41 41 H 1.09005 * 113.76480 * 221.14953 * 27 23 22 42 42 H 1.08998 * 113.77607 * 89.75407 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1011 1.3491 0.0000 4 6 1.6778 2.2601 0.8985 5 8 0.8242 1.9629 1.7073 6 6 2.2656 3.6477 0.8989 7 1 3.3402 3.5870 1.0718 8 6 2.0074 4.3030 -0.4334 9 1 1.1549 4.0048 -1.0257 10 6 2.8593 5.2833 -0.8962 11 7 3.8210 5.7375 -0.1226 12 14 2.6477 5.9662 -2.6219 13 1 3.6825 7.0007 -2.8753 14 1 2.7942 4.8677 -3.6104 15 1 1.2985 6.5728 -2.7522 16 6 1.6267 4.4637 1.9929 17 6 0.2889 4.8023 1.9110 18 6 -0.2982 5.5475 2.9164 19 6 0.4545 5.9610 3.9997 20 6 1.7934 5.6269 4.0790 21 6 2.3796 4.8784 3.0754 22 6 2.1498 -0.9354 1.0539 23 7 2.1294 -1.9700 -0.0017 24 6 2.1013 -3.3175 -0.0023 25 8 2.0874 -3.9243 -1.0549 26 8 2.0887 -3.9911 1.1634 27 6 2.1499 -0.9354 -1.0539 28 1 -0.3633 0.3572 -0.9636 29 1 -0.3633 -1.0131 0.1726 30 1 -0.3633 0.6560 0.7911 31 1 2.7840 1.5867 -0.6467 32 1 3.8829 5.4414 0.7990 33 1 -0.2982 4.4825 1.0628 34 1 -1.3442 5.8090 2.8544 35 1 -0.0036 6.5455 4.7839 36 1 2.3816 5.9503 4.9251 37 1 3.4257 4.6173 3.1374 38 1 3.1533 -0.6440 1.3641 39 1 1.4890 -1.1500 1.8938 40 1 2.0682 -4.9565 1.1123 41 1 1.4890 -1.1500 -1.8938 42 1 3.1533 -0.6440 -1.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571030446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:42 Heat of formation + Delta-G solvation = -82.466790 kcal Electronic energy + Delta-G solvation = -26846.548172 eV Core-core repulsion = 22984.793418 eV Total energy + Delta-G solvation = -3861.754754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10160 -40.91698 -40.02179 -38.94715 -36.99162 -35.81024 -34.77546 -32.66892 -31.59979 -31.34167 -28.76978 -28.34530 -27.52057 -25.62235 -23.51012 -23.20072 -22.25964 -21.16939 -20.39938 -19.27994 -19.15691 -18.57656 -17.87994 -17.59341 -17.39024 -16.43230 -16.25217 -15.94237 -15.78872 -15.58552 -15.14420 -14.87564 -14.70287 -14.54760 -14.24693 -14.04029 -13.93721 -13.72469 -13.37133 -13.14818 -13.14284 -12.86987 -12.71749 -12.61557 -12.53440 -11.97487 -11.93396 -11.89813 -11.85627 -11.73413 -10.84443 -10.55310 -10.36242 -10.18188 -9.91626 -9.61581 -9.29411 -8.54837 -6.32754 0.69068 0.74257 0.99269 1.62018 1.62751 1.66538 1.85472 1.87028 2.44813 2.62203 2.90698 3.13718 3.23291 3.26179 3.61179 3.87520 4.14707 4.23698 4.25049 4.30521 4.39455 4.40921 4.44001 4.47208 4.60597 4.71265 4.75416 4.78899 4.82907 4.88068 4.95132 5.27979 5.31517 5.36622 5.63119 5.63992 5.73312 5.76840 5.79713 6.10339 6.21816 6.35149 6.38679 6.59778 6.73019 7.25237 7.44966 7.49329 8.83071 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.004089 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.659007 B = 6845.901724 C = 8288.666353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.142 3.858 3 N -0.704 5.704 4 C 0.542 3.458 5 O -0.571 6.571 6 C 0.042 3.958 7 H 0.049 0.951 8 C -0.585 4.585 9 H 0.051 0.949 10 C -0.007 4.007 11 N -0.924 5.924 12 Si 1.104 2.896 13 H -0.292 1.292 14 H -0.261 1.261 15 H -0.282 1.282 16 C -0.044 4.044 17 C -0.104 4.104 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.128 4.128 21 C -0.149 4.149 22 C 0.107 3.893 23 N -0.626 5.626 24 C 0.691 3.309 25 O -0.614 6.614 26 O -0.518 6.518 27 C 0.136 3.864 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.415 0.585 32 H 0.266 0.734 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.447 0.553 41 H 0.104 0.896 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 -10.036 2.631 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.054 3.946 3 N -0.356 5.356 4 C 0.330 3.670 5 O -0.451 6.451 6 C 0.021 3.979 7 H 0.067 0.933 8 C -0.622 4.622 9 H 0.070 0.930 10 C -0.209 4.209 11 N -0.560 5.560 12 Si 0.928 3.072 13 H -0.217 1.217 14 H -0.186 1.186 15 H -0.208 1.208 16 C -0.045 4.045 17 C -0.123 4.123 18 C -0.153 4.153 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.016 4.016 23 N -0.369 5.369 24 C 0.446 3.554 25 O -0.507 6.507 26 O -0.330 6.330 27 C 0.016 3.984 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.310 0.690 41 H 0.122 0.878 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.848 -9.274 1.863 9.879 hybrid contribution -0.150 -1.443 0.830 1.671 sum -2.998 -10.717 2.693 11.450 Atomic orbital electron populations 1.21843 0.91678 1.02836 1.03603 1.22079 0.95134 0.81218 0.96154 1.45680 1.43212 1.10421 1.36330 1.20906 0.80741 0.86599 0.78714 1.90530 1.33350 1.80818 1.40431 1.18113 0.96021 0.88959 0.94820 0.93295 1.21656 1.14536 1.23975 1.02081 0.93036 1.26888 0.92271 0.94082 1.07644 1.70867 1.33046 1.43441 1.08601 0.83070 0.75933 0.76571 0.71665 1.21745 1.18613 1.20843 1.20176 0.94090 0.96629 0.93627 1.20820 0.94905 0.98349 0.98184 1.21350 1.00533 0.98798 0.94643 1.21288 0.94243 1.01602 0.98905 1.21302 0.95839 0.98637 0.98849 1.21165 0.99498 1.01072 0.95012 1.23818 1.02083 0.82808 0.92918 1.48229 1.75353 1.00590 1.12757 1.17114 0.75245 0.81388 0.81639 1.91032 1.58711 1.67822 1.33131 1.84188 1.87890 1.28753 1.32148 1.23653 1.03089 0.79989 0.91716 0.91469 0.91114 0.90996 0.74820 0.92316 0.88551 0.84750 0.83647 0.84266 0.87292 0.88400 0.89337 0.69007 0.87754 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.01 71.98 0.65 -3.23 16 2 C 0.14 3.66 1.28 5.36 0.01 3.66 16 3 N -0.70 -21.73 5.23 -427.56 -2.24 -23.97 16 4 C 0.54 21.37 6.81 87.66 0.60 21.97 16 5 O -0.57 -24.49 13.08 -3.05 -0.04 -24.53 16 6 C 0.04 1.88 1.92 -13.03 -0.03 1.86 16 7 H 0.05 2.31 6.82 -2.39 -0.02 2.29 16 8 C -0.58 -27.92 7.42 25.60 0.19 -27.73 16 9 H 0.05 2.49 7.82 -2.91 -0.02 2.46 16 10 C -0.01 -0.35 5.45 84.65 0.46 0.11 16 11 N -0.92 -50.02 13.56 21.44 0.29 -49.73 16 12 Si 1.10 44.90 29.91 68.60 2.05 46.95 16 13 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 15 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 16 C -0.04 -1.98 4.03 -19.87 -0.08 -2.06 16 17 C -0.10 -4.52 8.36 22.27 0.19 -4.34 16 18 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 19 C -0.14 -4.72 10.05 22.27 0.22 -4.49 16 20 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 21 C -0.15 -6.16 9.25 22.27 0.21 -5.95 16 22 C 0.11 2.61 8.23 86.44 0.71 3.32 16 23 N -0.63 -15.06 3.47 -965.76 -3.35 -18.42 16 24 C 0.69 17.75 9.29 129.79 1.21 18.96 16 25 O -0.61 -19.45 17.86 19.82 0.35 -19.10 16 26 O -0.52 -9.89 13.42 -55.46 -0.74 -10.63 16 27 C 0.14 2.93 8.11 86.49 0.70 3.63 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 30 H 0.07 2.42 5.59 -2.39 -0.01 2.41 16 31 H 0.41 11.93 8.53 -92.70 -0.79 11.14 16 32 H 0.27 14.44 6.30 -92.71 -0.58 13.85 16 33 H 0.10 4.35 7.86 -2.91 -0.02 4.32 16 34 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.11 4.33 7.96 -2.91 -0.02 4.31 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.22 8.10 -2.39 -0.02 2.21 16 40 H 0.45 3.97 9.11 -74.06 -0.67 3.29 16 41 H 0.10 2.09 8.10 -2.38 -0.02 2.07 16 42 H 0.12 2.07 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -67.55 359.89 1.59 -65.96 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.21 Total: 36.75 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.48 Total: -3.30 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -5.30 Total: -92.11 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.43 Total: -54.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.05 Total: 46.95 kcal Total: -67.55 1.59 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571030446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.507 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds