Wall clock time and date at job start Tue Mar 31 2020 12:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48496 * 109.46914 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00164 * 3 2 1 6 6 H 1.48503 * 109.46786 * 149.99974 * 3 2 1 7 7 C 1.37874 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00434 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47535 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00385 * 270.00316 * 10 9 7 12 12 C 1.50702 * 109.46851 * 269.99713 * 11 10 9 13 13 C 1.38229 * 119.61389 * 94.99717 * 12 11 10 14 14 C 1.38636 * 119.15986 * 179.97438 * 13 12 11 15 15 C 1.38671 * 118.41641 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16599 * 0.02562 * 15 14 13 17 17 N 1.31845 * 119.62110 * 274.72296 * 12 11 10 18 18 C 1.34782 * 120.00055 * 89.99615 * 10 9 7 19 19 O 1.21280 * 120.00283 * 179.97438 * 18 10 9 20 20 C 1.50702 * 119.99800 * 0.02562 * 18 10 9 21 21 H 1.09000 * 112.84825 * 346.89651 * 20 18 10 22 22 C 1.53773 * 113.69564 * 118.17214 * 20 18 10 23 23 C 1.53959 * 87.11150 * 89.19633 * 22 20 18 24 24 C 1.53779 * 113.61236 * 215.71209 * 20 18 10 25 25 H 1.09000 * 113.61712 * 156.16397 * 24 20 18 26 26 C 1.50697 * 113.61547 * 25.34048 * 24 20 18 27 27 O 1.20833 * 120.00481 * 251.34385 * 26 24 20 28 28 O 1.34226 * 119.99872 * 71.34533 * 26 24 20 29 29 H 0.96995 * 119.99475 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46844 * 59.99951 * 9 7 2 31 31 H 1.09007 * 109.47053 * 300.00137 * 9 7 2 32 32 H 1.09005 * 109.46823 * 29.99546 * 11 10 9 33 33 H 1.08992 * 109.47321 * 149.99447 * 11 10 9 34 34 H 1.07997 * 120.42436 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.79068 * 179.97438 * 14 13 12 36 36 H 1.08004 * 120.41639 * 180.02562 * 15 14 13 37 37 H 1.08003 * 119.61992 * 180.02562 * 16 15 14 38 38 H 1.08994 * 113.61840 * 203.67249 * 22 20 18 39 39 H 1.09002 * 113.61748 * 334.49494 * 22 20 18 40 40 H 1.08999 * 113.61385 * 270.84340 * 23 22 20 41 41 H 1.09003 * 113.66852 * 139.89241 * 23 22 20 42 42 H 0.96702 * 117.00295 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6680 -3.0288 1.7022 13 6 5.9514 -2.0020 2.5831 14 6 7.2641 -1.7929 2.9769 15 6 8.2470 -2.6277 2.4671 16 6 7.8881 -3.6329 1.5894 17 7 6.6278 -3.8067 1.2418 18 6 4.2240 -3.2109 -1.1682 19 8 4.6287 -4.3542 -1.1681 20 6 3.9728 -2.5006 -2.4733 21 1 3.4055 -1.5780 -2.3507 22 6 5.2318 -2.3389 -3.3413 23 6 4.8862 -3.7058 -3.9598 24 6 3.4243 -3.4185 -3.5785 25 1 2.8679 -2.8876 -4.3509 26 6 2.6896 -4.6244 -3.0524 27 8 3.1839 -5.7228 -3.1490 28 8 1.4861 -4.4785 -2.4764 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8912 32 1 3.5640 -2.8814 2.0276 33 1 4.0774 -4.3348 1.1377 34 1 5.1603 -1.3712 2.9605 35 1 7.5154 -0.9981 3.6636 36 1 9.2801 -2.4940 2.7524 37 1 8.6476 -4.2876 1.1883 38 1 5.1708 -1.5127 -4.0495 39 1 6.1595 -2.3382 -2.7690 40 1 5.3196 -4.5499 -3.4234 41 1 5.0554 -3.7546 -5.0355 42 1 1.0535 -5.2809 -2.1537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:28 Heat of formation + Delta-G solvation = -57.785040 kcal Electronic energy + Delta-G solvation = -27747.045044 eV Core-core repulsion = 23886.360571 eV Total energy + Delta-G solvation = -3860.684473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80218 -40.00848 -38.84200 -36.96029 -35.43514 -35.13136 -32.81883 -32.27238 -31.55760 -28.31068 -27.28962 -27.07487 -25.18825 -23.39450 -22.52378 -22.15720 -21.63735 -20.10332 -17.92169 -17.62463 -17.13372 -16.90101 -16.55329 -16.17273 -16.04939 -15.44965 -15.20663 -14.93137 -14.54897 -14.35928 -13.82955 -13.53794 -13.39337 -13.15133 -12.83653 -12.74711 -12.35550 -12.26361 -12.01344 -11.83324 -11.53370 -11.48168 -11.22929 -10.95988 -10.90786 -10.80079 -10.68500 -10.34616 -10.06338 -9.86126 -9.75758 -9.64101 -9.21051 -9.10987 -8.80605 -8.71484 -7.82929 -6.22902 -4.24665 1.19803 1.42256 2.73154 3.13066 3.20765 3.21357 3.23407 3.45259 3.69103 4.15431 4.23250 4.50987 4.63010 4.78861 4.86261 4.92277 5.03673 5.06866 5.09917 5.16280 5.26901 5.51071 5.64764 5.69002 5.77117 5.83907 5.90886 5.94692 6.08615 6.12656 6.16785 6.22206 6.25549 6.30196 6.39385 6.60674 6.63793 6.82408 7.04271 7.24941 7.40338 8.06686 8.23755 8.37932 8.45647 8.83504 8.92108 9.35855 10.89582 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.007178 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.824999 B = 3900.113913 C = 6122.910684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.083 0.917 9 C 0.208 3.792 10 N -0.581 5.581 11 C 0.168 3.832 12 C 0.119 3.881 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.457 5.457 18 C 0.531 3.469 19 O -0.533 6.533 20 C -0.123 4.123 21 H 0.122 0.878 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.087 4.087 25 H 0.127 0.873 26 C 0.492 3.508 27 O -0.509 6.509 28 O -0.506 6.506 29 H 0.266 0.734 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.669 -1.391 -0.307 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.101 0.899 9 C 0.087 3.913 10 N -0.312 5.312 11 C 0.044 3.956 12 C -0.020 4.020 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.064 4.064 17 N -0.166 5.166 18 C 0.319 3.681 19 O -0.410 6.410 20 C -0.144 4.144 21 H 0.140 0.860 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.106 4.106 25 H 0.145 0.855 26 C 0.334 3.666 27 O -0.397 6.397 28 O -0.316 6.316 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 11.800 -2.481 -1.044 12.103 hybrid contribution 0.169 1.451 0.953 1.744 sum 11.970 -1.030 -0.091 12.014 Atomic orbital electron populations 1.69890 1.06145 1.27076 1.49346 1.24851 0.94672 0.98637 0.94371 0.87020 0.80459 0.84326 0.78986 1.19824 1.20876 1.18965 1.21385 0.88772 0.95217 1.52319 0.89915 1.19875 0.96074 0.77892 0.97494 1.47745 1.63815 1.15839 1.03781 1.20143 0.88816 0.99675 0.86958 1.21910 0.96610 0.91068 0.92384 1.22120 0.97640 0.98969 0.99229 1.21545 0.92862 0.98193 0.98094 1.22101 1.00322 0.97694 1.00023 1.22788 0.93400 0.95890 0.94344 1.67663 1.00367 1.26580 1.21944 1.19789 0.77245 0.86236 0.84879 1.90727 1.45743 1.17383 1.87152 1.22493 0.99278 1.00749 0.91861 0.86013 1.22781 0.96961 0.98042 0.98280 1.23016 0.92210 0.98845 1.01092 1.22342 0.96033 0.93102 0.99152 0.85484 1.23028 0.78832 0.90583 0.74165 1.90648 1.66830 1.28019 1.54204 1.84656 1.32992 1.42852 1.71100 0.92394 0.94991 0.95210 0.88430 0.88926 0.84549 0.85125 0.85287 0.83220 0.89011 0.90765 0.87420 0.90959 0.74019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.96 55.43 0.77 -24.22 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 19.03 27.47 -169.99 -4.67 14.36 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 7 C -0.54 -13.59 9.74 -34.44 -0.34 -13.93 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 9 C 0.21 4.42 3.84 -5.20 -0.02 4.40 16 10 N -0.58 -11.78 2.44 -176.43 -0.43 -12.21 16 11 C 0.17 3.11 5.71 -5.19 -0.03 3.08 16 12 C 0.12 2.03 6.36 -82.59 -0.53 1.50 16 13 C -0.16 -2.30 9.72 -39.44 -0.38 -2.68 16 14 C -0.08 -0.98 10.18 -39.27 -0.40 -1.38 16 15 C -0.18 -2.10 10.11 -39.44 -0.40 -2.50 16 16 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 17 N -0.46 -7.96 10.27 -9.47 -0.10 -8.06 16 18 C 0.53 10.86 6.32 -10.98 -0.07 10.79 16 19 O -0.53 -11.93 13.27 -5.43 -0.07 -12.01 16 20 C -0.12 -2.18 3.58 -90.96 -0.33 -2.51 16 21 H 0.12 2.28 5.91 -51.93 -0.31 1.97 16 22 C -0.12 -1.76 7.67 -25.83 -0.20 -1.96 16 23 C -0.11 -1.71 6.92 -25.82 -0.18 -1.89 16 24 C -0.09 -1.42 4.20 -90.96 -0.38 -1.80 16 25 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 26 C 0.49 9.27 5.84 36.00 0.21 9.48 16 27 O -0.51 -10.69 16.32 -23.25 -0.38 -11.07 16 28 O -0.51 -9.14 13.42 -39.25 -0.53 -9.67 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.03 0.62 5.64 -51.92 -0.29 0.33 16 32 H 0.10 1.68 7.97 -51.93 -0.41 1.27 16 33 H 0.09 1.82 7.42 -51.93 -0.39 1.43 16 34 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.11 1.94 6.56 -51.93 -0.34 1.60 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.40 5.58 9.10 45.56 0.41 5.99 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -33.66 355.60 -8.04 -41.70 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.66 Total: 12.18 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -3.33 Total: 3.65 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.25 Total: -44.50 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.98 Total: -32.75 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.67 Total: 14.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.66 -8.04 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.089 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds