Wall clock time and date at job start Tue Mar 31 2020 12:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48496 * 109.46914 * 270.00161 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00164 * 3 2 1 6 6 H 1.48503 * 109.46786 * 149.99974 * 3 2 1 7 7 C 1.37874 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00434 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47535 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00385 * 270.00316 * 10 9 7 12 12 C 1.50702 * 109.46851 * 269.99713 * 11 10 9 13 13 C 1.38229 * 119.61389 * 94.99717 * 12 11 10 14 14 C 1.38636 * 119.15986 * 179.97438 * 13 12 11 15 15 C 1.38671 * 118.41641 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16599 * 0.02562 * 15 14 13 17 17 N 1.31845 * 119.62110 * 274.72296 * 12 11 10 18 18 C 1.34782 * 120.00055 * 89.99615 * 10 9 7 19 19 O 1.21280 * 120.00283 * 179.97438 * 18 10 9 20 20 C 1.50702 * 119.99800 * 0.02562 * 18 10 9 21 21 H 1.09000 * 112.84825 * 346.89651 * 20 18 10 22 22 C 1.53773 * 113.69564 * 118.17214 * 20 18 10 23 23 C 1.53959 * 87.11150 * 89.19633 * 22 20 18 24 24 C 1.53779 * 113.61236 * 215.71209 * 20 18 10 25 25 H 1.09000 * 113.61712 * 156.16397 * 24 20 18 26 26 C 1.50697 * 113.61547 * 25.34048 * 24 20 18 27 27 O 1.20833 * 120.00481 * 251.34385 * 26 24 20 28 28 O 1.34226 * 119.99872 * 71.34533 * 26 24 20 29 29 H 0.96995 * 119.99475 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46844 * 59.99951 * 9 7 2 31 31 H 1.09007 * 109.47053 * 300.00137 * 9 7 2 32 32 H 1.09005 * 109.46823 * 29.99546 * 11 10 9 33 33 H 1.08992 * 109.47321 * 149.99447 * 11 10 9 34 34 H 1.07997 * 120.42436 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.79068 * 179.97438 * 14 13 12 36 36 H 1.08004 * 120.41639 * 180.02562 * 15 14 13 37 37 H 1.08003 * 119.61992 * 180.02562 * 16 15 14 38 38 H 1.08994 * 113.61840 * 203.67249 * 22 20 18 39 39 H 1.09002 * 113.61748 * 334.49494 * 22 20 18 40 40 H 1.08999 * 113.61385 * 270.84340 * 23 22 20 41 41 H 1.09003 * 113.66852 * 139.89241 * 23 22 20 42 42 H 0.96702 * 117.00295 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2678 12 6 5.6680 -3.0288 1.7022 13 6 5.9514 -2.0020 2.5831 14 6 7.2641 -1.7929 2.9769 15 6 8.2470 -2.6277 2.4671 16 6 7.8881 -3.6329 1.5894 17 7 6.6278 -3.8067 1.2418 18 6 4.2240 -3.2109 -1.1682 19 8 4.6287 -4.3542 -1.1681 20 6 3.9728 -2.5006 -2.4733 21 1 3.4055 -1.5780 -2.3507 22 6 5.2318 -2.3389 -3.3413 23 6 4.8862 -3.7058 -3.9598 24 6 3.4243 -3.4185 -3.5785 25 1 2.8679 -2.8876 -4.3509 26 6 2.6896 -4.6244 -3.0524 27 8 3.1839 -5.7228 -3.1490 28 8 1.4861 -4.4785 -2.4764 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8912 32 1 3.5640 -2.8814 2.0276 33 1 4.0774 -4.3348 1.1377 34 1 5.1603 -1.3712 2.9605 35 1 7.5154 -0.9981 3.6636 36 1 9.2801 -2.4940 2.7524 37 1 8.6476 -4.2876 1.1883 38 1 5.1708 -1.5127 -4.0495 39 1 6.1595 -2.3382 -2.7690 40 1 5.3196 -4.5499 -3.4234 41 1 5.0554 -3.7546 -5.0355 42 1 1.0535 -5.2809 -2.1537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:27 Heat of formation + Delta-G solvation = -80.182691 kcal Electronic energy + Delta-G solvation = -27748.016279 eV Core-core repulsion = 23886.360571 eV Total energy + Delta-G solvation = -3861.655708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23201 -41.16629 -40.32913 -38.34978 -36.96762 -36.77597 -34.62620 -33.41302 -32.84987 -29.98177 -28.74287 -28.37960 -26.52512 -24.62815 -24.15500 -23.37238 -22.97571 -21.47801 -19.38919 -19.12578 -19.04639 -18.38258 -17.81449 -17.52822 -17.25336 -16.77458 -16.50156 -16.45390 -16.05248 -15.84205 -15.25929 -14.95118 -14.60859 -14.53170 -14.25703 -14.01672 -13.94919 -13.61315 -13.55904 -13.19894 -13.01432 -12.71873 -12.63317 -12.56372 -12.43355 -12.31304 -12.08123 -11.95238 -11.66848 -11.38558 -11.26129 -10.80509 -10.75533 -10.54424 -10.34043 -9.94789 -9.45370 -8.23379 -6.31044 0.12939 0.41311 1.23924 1.43367 1.44840 1.54022 1.68069 2.07160 2.33291 2.38579 2.98644 3.09744 3.34505 3.36780 3.53750 3.58412 3.79747 3.85662 4.02882 4.15521 4.24786 4.26820 4.40965 4.48674 4.56819 4.61803 4.66730 4.74461 4.77007 4.81635 4.86468 4.90144 4.95562 5.03668 5.23679 5.27505 5.41637 5.46997 5.63790 5.65142 5.81702 6.23845 6.60008 6.76648 7.02446 7.15063 7.27428 7.38312 8.92763 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.007178 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.824999 B = 3900.113913 C = 6122.910684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.535 4.535 8 H 0.031 0.969 9 C 0.219 3.781 10 N -0.586 5.586 11 C 0.169 3.831 12 C 0.095 3.905 13 C -0.166 4.166 14 C -0.075 4.075 15 C -0.163 4.163 16 C 0.078 3.922 17 N -0.500 5.500 18 C 0.523 3.477 19 O -0.560 6.560 20 C -0.136 4.136 21 H 0.113 0.887 22 C -0.102 4.102 23 C -0.108 4.108 24 C -0.091 4.091 25 H 0.162 0.838 26 C 0.487 3.513 27 O -0.538 6.538 28 O -0.518 6.518 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.132 0.868 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 1.373 -0.550 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.573 4.573 8 H 0.050 0.950 9 C 0.097 3.903 10 N -0.316 5.316 11 C 0.045 3.955 12 C -0.044 4.044 13 C -0.186 4.186 14 C -0.101 4.101 15 C -0.183 4.183 16 C -0.080 4.080 17 N -0.209 5.209 18 C 0.312 3.688 19 O -0.440 6.440 20 C -0.157 4.157 21 H 0.131 0.869 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.110 4.110 25 H 0.179 0.821 26 C 0.330 3.670 27 O -0.428 6.428 28 O -0.330 6.330 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 15.017 0.268 -1.270 15.073 hybrid contribution -0.857 0.446 1.114 1.474 sum 14.159 0.714 -0.157 14.178 Atomic orbital electron populations 1.70061 1.08370 1.28203 1.51295 1.25722 0.95348 1.02764 0.93745 0.85912 0.79840 0.78663 0.79872 1.18368 1.21356 1.16171 1.21438 0.90851 0.93301 1.51737 0.95039 1.19692 0.93190 0.78792 0.98577 1.47827 1.63629 1.15619 1.04559 1.20086 0.91039 0.97896 0.86484 1.21542 0.95339 0.92969 0.94503 1.22231 0.99373 0.98284 0.98760 1.21991 0.91566 0.98735 0.97791 1.22521 1.02248 0.95709 0.97798 1.23243 0.92479 0.97177 0.95055 1.67530 1.01980 1.27848 1.23578 1.20347 0.76581 0.86092 0.85825 1.90711 1.47074 1.18570 1.87612 1.22586 1.01712 1.00184 0.91236 0.86922 1.22838 0.94665 0.98861 0.97630 1.22912 0.90674 0.98026 1.02875 1.22685 0.96973 0.92021 0.99323 0.82095 1.23666 0.78629 0.91162 0.73496 1.90624 1.67375 1.29370 1.55444 1.84647 1.33213 1.44057 1.71050 0.92384 0.93689 0.93557 0.88320 0.91623 0.83888 0.81395 0.81188 0.81343 0.84943 0.91345 0.90999 0.87344 0.72523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.39 13.96 21.45 0.30 -54.09 16 2 C 0.02 1.22 5.47 84.65 0.46 1.68 16 3 Si 0.93 38.02 27.47 68.60 1.88 39.90 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -8.63 6.54 99.48 0.65 -7.98 16 7 C -0.53 -27.67 9.74 25.60 0.25 -27.42 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.22 9.22 3.84 85.63 0.33 9.55 16 10 N -0.59 -24.41 2.44 -830.50 -2.03 -26.43 16 11 C 0.17 6.58 5.71 85.63 0.49 7.07 16 12 C 0.09 3.24 6.36 42.56 0.27 3.51 16 13 C -0.17 -4.52 9.72 22.36 0.22 -4.30 16 14 C -0.08 -1.52 10.18 22.47 0.23 -1.30 16 15 C -0.16 -3.15 10.11 22.36 0.23 -2.92 16 16 C 0.08 2.02 11.18 84.67 0.95 2.97 16 17 N -0.50 -17.54 10.27 -183.89 -1.89 -19.43 16 18 C 0.52 21.96 6.32 87.66 0.55 22.51 16 19 O -0.56 -26.33 13.27 7.48 0.10 -26.23 16 20 C -0.14 -4.74 3.58 -11.02 -0.04 -4.78 16 21 H 0.11 4.10 5.91 -2.39 -0.01 4.09 16 22 C -0.10 -2.67 7.67 31.18 0.24 -2.43 16 23 C -0.11 -3.05 6.92 31.18 0.22 -2.84 16 24 C -0.09 -2.90 4.20 -11.01 -0.05 -2.94 16 25 H 0.16 3.97 8.14 -2.39 -0.02 3.95 16 26 C 0.49 18.86 5.84 71.23 0.42 19.28 16 27 O -0.54 -23.49 16.32 26.24 0.43 -23.06 16 28 O -0.52 -19.67 13.42 -51.38 -0.69 -20.36 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.05 1.79 7.13 -2.39 -0.02 1.78 16 31 H 0.05 1.83 5.64 -2.38 -0.01 1.81 16 32 H 0.10 3.64 7.97 -2.38 -0.02 3.62 16 33 H 0.07 2.83 7.42 -2.39 -0.02 2.81 16 34 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 40 H 0.07 2.61 6.56 -2.39 -0.02 2.59 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.42 12.47 9.10 -74.06 -0.67 11.80 16 Total: -1.00 -78.13 355.60 3.19 -74.93 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.33 Total: 37.13 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 4.76 Total: 17.63 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -3.62 Total: -99.95 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -0.16 Total: -69.65 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.88 Total: 39.90 kcal Total: -78.13 3.19 -74.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.249 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds