Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46795 * 239.99566 * 3 2 1 5 5 H 1.48494 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47126 * 120.00108 * 3 2 1 7 7 C 1.37884 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99599 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46506 * 120.00095 * 89.99446 * 10 9 7 12 12 C 1.50706 * 109.46590 * 90.00230 * 11 10 9 13 13 C 1.38220 * 119.61574 * 95.26018 * 12 11 10 14 14 C 1.38631 * 119.16036 * 180.22824 * 13 12 11 15 15 C 1.38675 * 118.41910 * 359.51942 * 14 13 12 16 16 C 1.38184 * 119.16116 * 0.25514 * 15 14 13 17 17 N 1.31852 * 119.61731 * 274.99805 * 12 11 10 18 18 C 1.34772 * 120.00168 * 270.00210 * 10 9 7 19 19 O 1.21287 * 120.00346 * 179.97438 * 18 10 9 20 20 C 1.50699 * 119.99756 * 359.97438 * 18 10 9 21 21 H 1.09000 * 112.85325 * 50.33575 * 20 18 10 22 22 C 1.53782 * 113.61658 * 279.13475 * 20 18 10 23 23 C 1.53777 * 87.08324 * 220.02309 * 22 20 18 24 24 C 1.53785 * 113.61209 * 181.53046 * 20 18 10 25 25 H 1.09000 * 113.61510 * 25.43794 * 24 20 18 26 26 C 1.50697 * 113.61751 * 254.52857 * 24 20 18 27 27 O 1.20826 * 119.99709 * 0.02562 * 26 24 20 28 28 O 1.34225 * 120.00432 * 180.02562 * 26 24 20 29 29 H 0.97001 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47913 * 59.99958 * 9 7 2 31 31 H 1.09002 * 109.47180 * 299.99234 * 9 7 2 32 32 H 1.09000 * 109.46825 * 330.01074 * 11 10 9 33 33 H 1.08994 * 109.47499 * 210.00126 * 11 10 9 34 34 H 1.07999 * 120.42427 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.79356 * 179.80055 * 14 13 12 36 36 H 1.07997 * 120.41922 * 180.23180 * 15 14 13 37 37 H 1.08006 * 119.61437 * 180.02562 * 16 15 14 38 38 H 1.09000 * 113.61339 * 334.57558 * 22 20 18 39 39 H 1.09005 * 113.61053 * 105.46698 * 22 20 18 40 40 H 1.08994 * 113.61541 * 139.98482 * 23 22 20 41 41 H 1.09005 * 113.61120 * 270.79677 * 23 22 20 42 42 H 0.96701 * 117.00140 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2693 12 6 1.7622 -5.2836 1.7043 13 6 2.0817 -6.5919 1.3932 14 6 1.2292 -7.6090 1.7938 15 6 0.0872 -7.2715 2.5045 16 6 -0.1640 -5.9415 2.7830 17 7 0.6673 -4.9996 2.3819 18 6 2.6409 -4.1249 -1.1666 19 8 3.4293 -5.0465 -1.1666 20 6 2.1508 -3.5525 -2.4717 21 1 2.2398 -2.4671 -2.5179 22 6 0.7675 -4.0757 -2.8931 23 6 1.3128 -4.1302 -4.3299 24 6 2.7148 -4.2700 -3.7094 25 1 3.0074 -5.3028 -3.5200 26 6 3.7773 -3.4825 -4.4319 27 8 4.1073 -2.3951 -4.0214 28 8 4.3571 -3.9890 -5.5314 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.6867 -3.3878 2.0289 33 1 3.6884 -4.5595 1.1390 34 1 2.9823 -6.8187 0.8420 35 1 1.4514 -8.6402 1.5621 36 1 -0.5973 -8.0383 2.8358 37 1 -1.0510 -5.6704 3.3364 38 1 0.5267 -5.0552 -2.4799 39 1 -0.0339 -3.3493 -2.7574 40 1 0.9907 -5.0105 -4.8860 41 1 1.1718 -3.2033 -4.8859 42 1 5.0336 -3.4472 -5.9603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = -71.206172 kcal Electronic energy + Delta-G solvation = -27216.702592 eV Core-core repulsion = 23355.436135 eV Total energy + Delta-G solvation = -3861.266457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73028 -39.98678 -39.06313 -37.07791 -35.79160 -35.08863 -32.78319 -32.18745 -31.42655 -27.89439 -27.23479 -26.91188 -25.21047 -23.32956 -22.80984 -21.98218 -21.89676 -19.68959 -18.46158 -17.80081 -17.07993 -16.83281 -16.33261 -16.22991 -15.81105 -15.51308 -15.27440 -15.20723 -14.46881 -14.20555 -13.99598 -13.71207 -13.11739 -13.09511 -12.80891 -12.56547 -12.38291 -12.12929 -11.85339 -11.61995 -11.54296 -11.34409 -11.30146 -11.18265 -10.91168 -10.75001 -10.60969 -10.32308 -10.11095 -10.08239 -9.77024 -9.65606 -9.21068 -9.10124 -8.73340 -8.45532 -7.77183 -6.09892 -4.16155 1.28932 1.50049 2.42809 3.19403 3.27050 3.32710 3.35819 3.41726 3.76735 4.25582 4.41901 4.55417 4.58818 4.66326 4.94850 4.97566 5.04334 5.07572 5.24287 5.24334 5.36865 5.50720 5.59460 5.77639 5.78850 5.81231 5.90190 5.99858 6.02261 6.15865 6.20338 6.24333 6.34560 6.39749 6.60228 6.69723 6.79913 6.91148 7.29330 7.55945 7.85077 8.10824 8.13726 8.26192 8.35449 8.82304 8.98067 9.50909 10.96961 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008358 B = 0.006154 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3349.103221 B = 4548.587237 C = 6967.343156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.237 3.763 10 N -0.581 5.581 11 C 0.166 3.834 12 C 0.122 3.878 13 C -0.153 4.153 14 C -0.083 4.083 15 C -0.182 4.182 16 C 0.095 3.905 17 N -0.464 5.464 18 C 0.529 3.471 19 O -0.576 6.576 20 C -0.104 4.104 21 H 0.141 0.859 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.091 4.091 25 H 0.132 0.868 26 C 0.486 3.514 27 O -0.503 6.503 28 O -0.520 6.520 29 H 0.264 0.736 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -13.172 -3.724 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.117 3.883 10 N -0.309 5.309 11 C 0.041 3.959 12 C -0.017 4.017 13 C -0.173 4.173 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.062 4.062 17 N -0.173 5.173 18 C 0.318 3.682 19 O -0.458 6.458 20 C -0.125 4.125 21 H 0.158 0.842 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.110 4.110 25 H 0.150 0.850 26 C 0.328 3.672 27 O -0.389 6.389 28 O -0.332 6.332 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.274 -12.532 -3.192 12.936 hybrid contribution 1.031 0.509 -0.370 1.208 sum 1.305 -12.023 -3.563 12.608 Atomic orbital electron populations 1.69917 1.05924 1.27238 1.49810 1.24888 0.94807 0.99108 0.94732 0.86614 0.79629 0.82719 0.78910 1.19989 1.21224 1.20161 1.21456 0.93587 0.90509 1.52031 0.92163 1.19557 0.87398 0.82016 0.99301 1.48149 1.45342 1.34233 1.03222 1.20163 0.94752 0.93558 0.87406 1.21877 0.92966 0.94048 0.92857 1.22126 1.01351 0.93396 1.00443 1.21541 0.93921 0.99578 0.95919 1.22088 0.98711 0.98086 1.01319 1.22771 0.97897 0.88828 0.96748 1.67604 1.02889 1.37345 1.09439 1.20204 0.80389 0.82030 0.85615 1.90553 1.36465 1.30842 1.87936 1.22705 0.96035 1.03690 0.90101 0.84163 1.22779 0.96193 1.02150 0.94743 1.22847 0.92289 1.03144 0.97301 1.22501 0.91609 1.01383 0.95525 0.84974 1.23415 0.80929 0.85026 0.77832 1.90769 1.61236 1.21765 1.65166 1.84551 1.54021 1.53112 1.41485 0.92595 0.94234 0.93526 0.88449 0.89330 0.84455 0.85319 0.85321 0.83055 0.89783 0.89117 0.89972 0.89296 0.73812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -14.34 9.13 -34.44 -0.31 -14.65 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.71 4.88 -5.19 -0.03 5.68 16 10 N -0.58 -12.34 2.44 -176.43 -0.43 -12.77 16 11 C 0.17 3.17 5.72 -5.19 -0.03 3.14 16 12 C 0.12 2.14 6.36 -82.59 -0.53 1.62 16 13 C -0.15 -2.33 9.72 -39.44 -0.38 -2.72 16 14 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 15 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 16 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.32 10.27 -9.47 -0.10 -8.42 16 18 C 0.53 10.88 7.20 -10.99 -0.08 10.80 16 19 O -0.58 -12.17 15.47 5.55 0.09 -12.08 16 20 C -0.10 -1.93 2.12 -90.96 -0.19 -2.13 16 21 H 0.14 3.02 6.96 -51.93 -0.36 2.66 16 22 C -0.12 -1.84 6.84 -25.92 -0.18 -2.02 16 23 C -0.12 -1.51 7.64 -25.83 -0.20 -1.71 16 24 C -0.09 -1.41 3.58 -90.87 -0.33 -1.73 16 25 H 0.13 2.00 7.45 -51.93 -0.39 1.61 16 26 C 0.49 7.84 7.86 36.00 0.28 8.12 16 27 O -0.50 -10.05 16.66 -18.75 -0.31 -10.36 16 28 O -0.52 -6.41 13.42 -39.24 -0.53 -6.93 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 0.97 5.66 -51.93 -0.29 0.67 16 31 H 0.05 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.10 1.92 8.07 -51.93 -0.42 1.50 16 33 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 34 H 0.14 2.07 8.04 -52.49 -0.42 1.65 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 39 H 0.09 1.43 7.61 -51.93 -0.39 1.04 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 42 H 0.40 3.22 9.10 45.56 0.41 3.63 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.93 363.30 -7.89 -40.82 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.74 Total: 8.83 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.06 Total: 3.27 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.21 Total: -45.36 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.75 Total: -29.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.93 -7.89 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.384 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds