Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46795 * 239.99566 * 3 2 1 5 5 H 1.48494 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47126 * 120.00108 * 3 2 1 7 7 C 1.37884 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99599 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46506 * 120.00095 * 89.99446 * 10 9 7 12 12 C 1.50706 * 109.46590 * 90.00230 * 11 10 9 13 13 C 1.38220 * 119.61574 * 95.26018 * 12 11 10 14 14 C 1.38631 * 119.16036 * 180.22824 * 13 12 11 15 15 C 1.38675 * 118.41910 * 359.51942 * 14 13 12 16 16 C 1.38184 * 119.16116 * 0.25514 * 15 14 13 17 17 N 1.31852 * 119.61731 * 274.99805 * 12 11 10 18 18 C 1.34772 * 120.00168 * 270.00210 * 10 9 7 19 19 O 1.21287 * 120.00346 * 179.97438 * 18 10 9 20 20 C 1.50699 * 119.99756 * 359.97438 * 18 10 9 21 21 H 1.09000 * 112.85325 * 50.33575 * 20 18 10 22 22 C 1.53782 * 113.61658 * 279.13475 * 20 18 10 23 23 C 1.53777 * 87.08324 * 220.02309 * 22 20 18 24 24 C 1.53785 * 113.61209 * 181.53046 * 20 18 10 25 25 H 1.09000 * 113.61510 * 25.43794 * 24 20 18 26 26 C 1.50697 * 113.61751 * 254.52857 * 24 20 18 27 27 O 1.20826 * 119.99709 * 0.02562 * 26 24 20 28 28 O 1.34225 * 120.00432 * 180.02562 * 26 24 20 29 29 H 0.97001 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47913 * 59.99958 * 9 7 2 31 31 H 1.09002 * 109.47180 * 299.99234 * 9 7 2 32 32 H 1.09000 * 109.46825 * 330.01074 * 11 10 9 33 33 H 1.08994 * 109.47499 * 210.00126 * 11 10 9 34 34 H 1.07999 * 120.42427 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.79356 * 179.80055 * 14 13 12 36 36 H 1.07997 * 120.41922 * 180.23180 * 15 14 13 37 37 H 1.08006 * 119.61437 * 180.02562 * 16 15 14 38 38 H 1.09000 * 113.61339 * 334.57558 * 22 20 18 39 39 H 1.09005 * 113.61053 * 105.46698 * 22 20 18 40 40 H 1.08994 * 113.61541 * 139.98482 * 23 22 20 41 41 H 1.09005 * 113.61120 * 270.79677 * 23 22 20 42 42 H 0.96701 * 117.00140 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2693 12 6 1.7622 -5.2836 1.7043 13 6 2.0817 -6.5919 1.3932 14 6 1.2292 -7.6090 1.7938 15 6 0.0872 -7.2715 2.5045 16 6 -0.1640 -5.9415 2.7830 17 7 0.6673 -4.9996 2.3819 18 6 2.6409 -4.1249 -1.1666 19 8 3.4293 -5.0465 -1.1666 20 6 2.1508 -3.5525 -2.4717 21 1 2.2398 -2.4671 -2.5179 22 6 0.7675 -4.0757 -2.8931 23 6 1.3128 -4.1302 -4.3299 24 6 2.7148 -4.2700 -3.7094 25 1 3.0074 -5.3028 -3.5200 26 6 3.7773 -3.4825 -4.4319 27 8 4.1073 -2.3951 -4.0214 28 8 4.3571 -3.9890 -5.5314 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.6867 -3.3878 2.0289 33 1 3.6884 -4.5595 1.1390 34 1 2.9823 -6.8187 0.8420 35 1 1.4514 -8.6402 1.5621 36 1 -0.5973 -8.0383 2.8358 37 1 -1.0510 -5.6704 3.3364 38 1 0.5267 -5.0552 -2.4799 39 1 -0.0339 -3.3493 -2.7574 40 1 0.9907 -5.0105 -4.8860 41 1 1.1718 -3.2033 -4.8859 42 1 5.0336 -3.4472 -5.9603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -92.476628 kcal Electronic energy + Delta-G solvation = -27217.624948 eV Core-core repulsion = 23355.436135 eV Total energy + Delta-G solvation = -3862.188813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08592 -41.20316 -40.43904 -38.41663 -37.02686 -36.80496 -34.70539 -33.36153 -32.80329 -29.46159 -28.86857 -28.25382 -26.62038 -24.89793 -24.30045 -23.18980 -23.12558 -21.02404 -19.88582 -19.13082 -18.70061 -18.39972 -17.71404 -17.59389 -17.28996 -16.85796 -16.65737 -16.43463 -16.29439 -15.67788 -15.33227 -15.04010 -14.43702 -14.31899 -14.20458 -13.95804 -13.82371 -13.68612 -13.33763 -13.14896 -13.08666 -12.77470 -12.64741 -12.58382 -12.57803 -12.49439 -12.11773 -12.04059 -11.76188 -11.53293 -11.38482 -10.80865 -10.71747 -10.57582 -10.35115 -9.92483 -9.50308 -8.20375 -6.33578 0.15450 0.42186 1.16495 1.38252 1.39971 1.47199 1.66041 2.03516 2.31070 2.43543 3.00950 3.09770 3.25692 3.37903 3.45947 3.70476 3.71894 3.84474 4.04747 4.11645 4.22315 4.28326 4.47148 4.51645 4.59700 4.60807 4.71210 4.77565 4.81064 4.89182 4.92084 4.95067 5.00349 5.24323 5.26524 5.29313 5.33870 5.59153 5.62924 5.78869 5.84654 6.06663 6.53217 6.79263 6.99667 7.14960 7.23921 7.38454 8.85205 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008358 B = 0.006154 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3349.103221 B = 4548.587237 C = 6967.343156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.045 0.955 9 C 0.261 3.739 10 N -0.586 5.586 11 C 0.165 3.835 12 C 0.096 3.904 13 C -0.159 4.159 14 C -0.077 4.077 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.506 5.506 18 C 0.525 3.475 19 O -0.583 6.583 20 C -0.121 4.121 21 H 0.104 0.896 22 C -0.115 4.115 23 C -0.095 4.095 24 C -0.088 4.088 25 H 0.142 0.858 26 C 0.492 3.508 27 O -0.551 6.551 28 O -0.503 6.503 29 H 0.268 0.732 30 H 0.035 0.965 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -15.513 -4.700 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.063 0.937 9 C 0.140 3.860 10 N -0.315 5.315 11 C 0.041 3.959 12 C -0.042 4.042 13 C -0.180 4.180 14 C -0.102 4.102 15 C -0.182 4.182 16 C -0.077 4.077 17 N -0.217 5.217 18 C 0.314 3.686 19 O -0.466 6.466 20 C -0.142 4.142 21 H 0.122 0.878 22 C -0.153 4.153 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.160 0.840 26 C 0.336 3.664 27 O -0.442 6.442 28 O -0.317 6.317 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -0.362 -14.898 -4.190 15.481 hybrid contribution 1.250 1.139 -0.034 1.692 sum 0.888 -13.759 -4.224 14.420 Atomic orbital electron populations 1.69994 1.06913 1.28092 1.50341 1.25551 0.95590 1.01915 0.94389 0.85740 0.78621 0.79492 0.78631 1.20363 1.19984 1.19768 1.21632 0.92993 0.92062 1.52032 0.93687 1.19045 0.87245 0.82153 0.97569 1.48100 1.45073 1.33814 1.04484 1.20144 0.95675 0.93894 0.86156 1.21517 0.93422 0.94265 0.94948 1.22134 1.01989 0.93101 1.00776 1.21981 0.93083 1.00585 0.94580 1.22523 0.98639 0.97893 0.99160 1.23273 0.97985 0.89650 0.96819 1.67484 1.03825 1.39591 1.10755 1.20600 0.80067 0.81919 0.86008 1.90523 1.36683 1.31265 1.88135 1.22712 0.99228 1.01851 0.90400 0.87761 1.22776 0.93957 1.01983 0.96571 1.22813 0.89378 1.05085 0.95917 1.22525 0.93071 1.00926 0.94170 0.84049 1.23488 0.80588 0.84164 0.78144 1.90763 1.62825 1.23862 1.66700 1.84490 1.54277 1.52908 1.39979 0.92305 0.94752 0.96125 0.90425 0.89082 0.84763 0.81531 0.80990 0.80952 0.88776 0.90232 0.86049 0.88979 0.71354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.41 13.29 21.45 0.28 -52.13 16 2 C 0.03 1.46 5.46 84.66 0.46 1.93 16 3 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.55 -30.73 9.13 25.60 0.23 -30.49 16 8 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.26 13.30 4.88 85.63 0.42 13.72 16 10 N -0.59 -26.27 2.44 -830.49 -2.03 -28.29 16 11 C 0.17 6.74 5.72 85.63 0.49 7.23 16 12 C 0.10 3.50 6.36 42.55 0.27 3.77 16 13 C -0.16 -4.76 9.72 22.36 0.22 -4.55 16 14 C -0.08 -1.69 10.18 22.47 0.23 -1.46 16 15 C -0.16 -3.36 10.11 22.36 0.23 -3.13 16 16 C 0.08 2.19 11.18 84.67 0.95 3.13 16 17 N -0.51 -18.60 10.27 -183.88 -1.89 -20.48 16 18 C 0.52 22.30 7.20 87.66 0.63 22.93 16 19 O -0.58 -25.02 15.47 -3.05 -0.05 -25.07 16 20 C -0.12 -4.58 2.12 -11.01 -0.02 -4.61 16 21 H 0.10 4.77 6.96 -2.39 -0.02 4.75 16 22 C -0.12 -3.45 6.84 31.12 0.21 -3.24 16 23 C -0.09 -2.21 7.64 31.18 0.24 -1.98 16 24 C -0.09 -2.62 3.58 -10.95 -0.04 -2.66 16 25 H 0.14 4.01 7.45 -2.39 -0.02 3.99 16 26 C 0.49 15.50 7.86 71.24 0.56 16.06 16 27 O -0.55 -22.44 16.66 21.97 0.37 -22.08 16 28 O -0.50 -11.27 13.42 -51.37 -0.69 -11.96 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.03 1.78 5.66 -2.39 -0.01 1.77 16 31 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.08 3.35 8.07 -2.39 -0.02 3.33 16 33 H 0.09 3.54 7.32 -2.39 -0.02 3.52 16 34 H 0.13 4.00 8.04 -2.91 -0.02 3.98 16 35 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 38 H 0.09 2.63 8.09 -2.39 -0.02 2.61 16 39 H 0.08 2.55 7.61 -2.38 -0.02 2.53 16 40 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.09 2.13 8.10 -2.38 -0.02 2.11 16 42 H 0.43 5.81 9.10 -74.06 -0.67 5.14 16 Total: -1.00 -74.82 363.30 3.48 -71.34 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.38 Total: 25.20 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 5.07 Total: 16.65 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.63 Total: -100.90 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.37 Total: -59.11 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.82 3.48 -71.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.138 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds