Wall clock time and date at job start Tue Mar 31 2020 12:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99863 * 2 1 4 4 H 1.48494 * 109.46728 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46784 * 299.99934 * 3 2 1 6 6 H 1.48498 * 109.47021 * 59.99973 * 3 2 1 7 7 C 1.37873 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00415 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.38279 * 119.93218 * 90.00091 * 10 9 7 12 12 C 1.38111 * 120.07363 * 179.97438 * 11 10 9 13 13 C 1.38867 * 119.92739 * 0.02562 * 12 11 10 14 14 N 1.39942 * 120.06812 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00197 * 146.84411 * 14 13 12 16 16 O 1.21592 * 119.99777 * 354.69421 * 15 14 13 17 17 N 1.34777 * 120.00434 * 174.68876 * 15 14 13 18 18 C 1.46504 * 120.00167 * 180.02562 * 17 15 14 19 19 H 1.08998 * 112.90249 * 336.25360 * 18 17 15 20 20 C 1.53779 * 113.61441 * 107.50021 * 18 17 15 21 21 C 1.53958 * 87.11142 * 89.18832 * 20 18 17 22 22 H 1.09000 * 113.61107 * 270.84559 * 21 20 18 23 23 C 1.50695 * 113.66759 * 139.88682 * 21 20 18 24 24 O 1.20822 * 120.00366 * 262.55162 * 23 21 20 25 25 O 1.34236 * 119.99586 * 82.55692 * 23 21 20 26 26 C 1.53777 * 113.61570 * 205.00180 * 18 17 15 27 27 C 1.38867 * 119.86295 * 0.27687 * 13 12 11 28 28 C 1.38120 * 119.92502 * 359.46753 * 27 13 12 29 29 H 0.97000 * 119.99731 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46790 * 60.00378 * 9 7 2 31 31 H 1.08995 * 109.47122 * 299.99990 * 9 7 2 32 32 H 1.08007 * 119.96200 * 0.02562 * 11 10 9 33 33 H 1.08000 * 120.03279 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00202 * 326.84638 * 14 13 12 35 35 H 0.96997 * 119.99873 * 359.97438 * 17 15 14 36 36 H 1.08994 * 113.61516 * 203.66789 * 20 18 17 37 37 H 1.09001 * 113.61789 * 334.57200 * 20 18 17 38 38 H 0.96697 * 116.99821 * 180.02562 * 25 23 21 39 39 H 1.08998 * 113.61319 * 25.42724 * 26 18 17 40 40 H 1.08998 * 113.61350 * 156.25432 * 26 18 17 41 41 H 1.07990 * 120.03538 * 179.70110 * 27 13 12 42 42 H 1.08001 * 119.96300 * 180.24046 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 6 2.6797 -4.1685 1.1997 12 6 3.5768 -5.2185 1.2029 13 6 4.0280 -5.7479 0.0010 14 7 4.9375 -6.8115 0.0008 15 6 4.8895 -7.7390 -0.9759 16 8 3.9976 -7.7067 -1.8017 17 7 5.8302 -8.7023 -1.0374 18 6 5.7783 -9.7101 -2.0995 19 1 4.7765 -9.8455 -2.5072 20 6 6.8618 -9.5276 -3.1753 21 6 7.7666 -10.4180 -2.3042 22 1 8.3498 -9.8621 -1.5700 23 6 8.5976 -11.3944 -3.0960 24 8 8.2255 -12.5362 -3.2285 25 8 9.7514 -10.9954 -3.6542 26 6 6.4770 -11.0295 -1.7313 27 6 3.5798 -5.2155 -1.2007 28 6 2.6786 -4.1688 -1.1971 29 1 -0.4850 0.8401 0.0004 30 1 0.6242 -2.5574 -0.8880 31 1 0.6248 -2.5563 0.8919 32 1 2.3280 -3.7566 2.1342 33 1 3.9276 -5.6269 2.1391 34 1 5.6024 -6.8813 0.7036 35 1 6.5419 -8.7278 -0.3790 36 1 6.6041 -9.9757 -4.1349 37 1 7.2167 -8.5012 -3.2680 38 1 10.2496 -11.6572 -4.1530 39 1 6.5213 -11.2155 -0.6582 40 1 6.1132 -11.8884 -2.2952 41 1 3.9326 -5.6218 -2.1370 42 1 2.3266 -3.7568 -2.1313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574790738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:10 Heat of formation + Delta-G solvation = -102.307337 kcal Electronic energy + Delta-G solvation = -24947.242592 eV Core-core repulsion = 21084.627488 eV Total energy + Delta-G solvation = -3862.615105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02982 -41.36147 -39.99374 -38.95088 -37.06046 -36.20282 -35.03901 -34.25638 -31.98634 -31.71799 -28.62078 -27.65157 -26.79129 -25.20963 -23.84798 -23.18958 -22.45738 -21.59747 -20.33617 -19.76110 -19.05467 -18.50940 -18.36691 -17.86169 -16.89291 -16.82780 -16.58144 -16.44055 -15.93798 -15.82814 -15.32088 -15.03419 -14.66312 -14.52346 -14.36229 -14.21700 -13.78397 -13.58109 -13.46394 -13.24978 -13.12102 -12.87456 -12.61561 -12.55596 -12.43560 -12.02201 -11.81408 -11.75305 -11.64275 -11.52350 -11.37594 -11.24860 -10.88960 -10.58924 -10.14935 -9.71820 -8.78909 -8.15852 -6.30817 0.52775 0.62060 1.15981 1.41024 1.41664 1.52428 1.55294 2.05811 2.16556 2.42030 3.06388 3.12920 3.14559 3.30951 3.38619 3.75160 3.99162 4.09164 4.19969 4.40040 4.42664 4.56420 4.62015 4.69833 4.69879 4.72872 4.81254 4.87243 4.94826 5.03457 5.16737 5.33609 5.36367 5.45766 5.53499 5.53886 5.62254 5.66630 5.78760 5.99789 6.13098 6.16228 6.30071 6.82375 6.99077 7.02188 7.37567 7.50989 8.91903 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.001965 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.447066 B =14243.271493 C =14593.889949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.056 3.944 10 C -0.078 4.078 11 C -0.113 4.113 12 C -0.129 4.129 13 C 0.141 3.859 14 N -0.666 5.666 15 C 0.701 3.299 16 O -0.615 6.615 17 N -0.705 5.705 18 C 0.136 3.864 19 H 0.092 0.908 20 C -0.131 4.131 21 C -0.105 4.105 22 H 0.152 0.848 23 C 0.492 3.508 24 O -0.550 6.550 25 O -0.514 6.514 26 C -0.114 4.114 27 C -0.123 4.123 28 C -0.120 4.120 29 H 0.265 0.735 30 H -0.002 1.002 31 H 0.007 0.993 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.425 0.575 35 H 0.418 0.582 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.426 0.574 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.761 -23.520 -0.624 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.079 4.079 11 C -0.131 4.131 12 C -0.149 4.149 13 C 0.046 3.954 14 N -0.315 5.315 15 C 0.402 3.598 16 O -0.494 6.494 17 N -0.361 5.361 18 C 0.030 3.970 19 H 0.110 0.890 20 C -0.170 4.170 21 C -0.123 4.123 22 H 0.169 0.831 23 C 0.336 3.664 24 O -0.441 6.441 25 O -0.327 6.327 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.139 4.139 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.025 0.975 32 H 0.144 0.856 33 H 0.178 0.822 34 H 0.264 0.736 35 H 0.256 0.744 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.287 0.713 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.572 -23.465 -1.200 31.229 hybrid contribution 0.725 0.569 -0.134 0.931 sum 21.297 -22.896 -1.334 31.298 Atomic orbital electron populations 1.70100 1.07716 1.27817 1.51551 1.25968 0.95792 1.03217 0.94719 0.85363 0.78983 0.78639 0.77860 1.18740 1.20449 1.20064 1.21426 0.93154 0.91133 1.50535 0.92532 1.18097 0.92928 0.91299 0.95757 1.20388 0.97883 0.95799 0.93834 1.20965 0.98029 0.96709 0.97437 1.20997 0.98533 0.98159 0.97207 1.17307 0.94701 0.89874 0.93514 1.42227 1.35923 1.23967 1.29362 1.16072 0.82325 0.79843 0.81574 1.90966 1.38281 1.76691 1.43462 1.44503 1.29446 1.29004 1.33120 1.21599 0.99889 0.87618 0.87896 0.88983 1.23426 0.94789 1.00628 0.98196 1.22732 0.94360 0.96249 0.98999 0.83086 1.23605 0.79177 0.87420 0.76182 1.90724 1.71439 1.22481 1.59442 1.84533 1.34426 1.48795 1.64994 1.23286 0.91846 0.96326 1.03787 1.20995 0.99357 0.95978 0.98004 1.20905 0.98575 0.96817 0.97620 0.92644 0.98380 0.97517 0.85618 0.82222 0.73578 0.74450 0.88674 0.89489 0.71272 0.87784 0.87975 0.85877 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.52 -30.30 9.09 25.60 0.23 -30.07 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.06 3.08 5.10 29.10 0.15 3.23 16 10 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 11 C -0.11 -4.25 9.69 22.25 0.22 -4.03 16 12 C -0.13 -3.73 9.96 22.39 0.22 -3.51 16 13 C 0.14 4.19 6.28 38.15 0.24 4.43 16 14 N -0.67 -13.37 5.35 -317.18 -1.70 -15.07 16 15 C 0.70 15.69 8.30 179.06 1.49 17.17 16 16 O -0.61 -20.31 13.64 -4.01 -0.05 -20.37 16 17 N -0.70 -8.53 5.27 -455.29 -2.40 -10.93 16 18 C 0.14 1.71 4.32 45.51 0.20 1.91 16 19 H 0.09 1.67 7.46 -2.39 -0.02 1.65 16 20 C -0.13 -1.39 7.44 31.18 0.23 -1.16 16 21 C -0.10 -0.79 4.15 -10.95 -0.05 -0.83 16 22 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 23 C 0.49 5.81 7.86 71.23 0.56 6.37 16 24 O -0.55 -10.28 16.66 21.98 0.37 -9.91 16 25 O -0.51 -4.20 13.42 -51.47 -0.69 -4.89 16 26 C -0.11 -0.97 7.15 31.12 0.22 -0.74 16 27 C -0.12 -4.50 8.65 22.39 0.19 -4.30 16 28 C -0.12 -5.12 9.69 22.25 0.22 -4.90 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 31 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.43 4.55 8.83 -92.70 -0.82 3.73 16 35 H 0.42 1.72 8.72 -92.71 -0.81 0.91 16 36 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.43 0.30 9.10 -74.06 -0.67 -0.37 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.10 1.15 7.43 -2.39 -0.02 1.13 16 41 H 0.12 4.53 6.43 -2.92 -0.02 4.51 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -81.70 363.59 1.10 -80.60 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.22 Total: 10.15 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.48 Total: -19.59 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.81 Total: -82.57 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.38 Total: -35.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -81.70 1.10 -80.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574790738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.709 kcal (2) G-P(sol) polarization free energy of solvation -81.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds