Wall clock time and date at job start Tue Mar 31 2020 13:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46828 * 192.34904 * 3 2 1 5 5 C 1.36874 * 119.99789 * 276.62013 * 4 3 2 6 6 H 1.07997 * 120.00250 * 185.00995 * 5 4 3 7 7 C 1.39017 * 120.00217 * 5.01099 * 5 4 3 8 8 N 1.31396 * 119.99998 * 28.56588 * 7 5 4 9 9 Si 1.86807 * 119.99932 * 208.57213 * 7 5 4 10 10 H 1.48495 * 109.47146 * 89.99825 * 9 7 5 11 11 H 1.48505 * 109.46491 * 209.99747 * 9 7 5 12 12 H 1.48498 * 109.46979 * 329.99513 * 9 7 5 13 13 C 1.34774 * 120.00065 * 96.62083 * 4 3 2 14 14 O 1.21727 * 119.99714 * 187.02368 * 13 4 3 15 15 C 1.46689 * 120.00061 * 7.02803 * 13 4 3 16 16 N 1.37808 * 125.84588 * 328.57926 * 15 13 4 17 17 H 0.96996 * 125.38610 * 0.02562 * 16 15 13 18 18 C 1.34266 * 109.22774 * 180.12105 * 16 15 13 19 19 C 1.50699 * 125.80028 * 179.87260 * 18 16 15 20 20 C 1.38315 * 108.39935 * 359.60915 * 18 16 15 21 21 C 1.47253 * 126.46627 * 180.24259 * 20 18 16 22 22 O 1.21531 * 120.00110 * 90.02517 * 21 20 18 23 23 O 1.34768 * 119.99446 * 270.02125 * 21 20 18 24 24 C 1.36442 * 125.84742 * 148.25788 * 15 13 4 25 25 C 1.50707 * 126.49929 * 0.04150 * 24 15 13 26 26 C 1.52994 * 109.46792 * 269.97216 * 25 24 15 27 27 C 1.53009 * 109.46965 * 180.02562 * 26 25 24 28 28 H 4.40641 * 5.51533 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47128 * 72.34767 * 3 2 1 30 30 H 1.08994 * 109.47286 * 312.34804 * 3 2 1 31 31 H 0.96991 * 119.99705 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47161 * 269.69029 * 19 18 16 33 33 H 1.08996 * 109.46756 * 149.69365 * 19 18 16 34 34 H 1.09000 * 109.46901 * 29.69223 * 19 18 16 35 35 H 0.96702 * 116.99272 * 180.02562 * 23 21 20 36 36 H 1.08999 * 109.47100 * 29.97679 * 25 24 15 37 37 H 1.08997 * 109.46686 * 149.96961 * 25 24 15 38 38 H 1.09000 * 109.47184 * 299.99940 * 26 25 24 39 39 H 1.08997 * 109.47714 * 60.00374 * 26 25 24 40 40 H 1.08992 * 109.47018 * 180.02562 * 27 26 25 41 41 H 1.08999 * 109.46822 * 300.00399 * 27 26 25 42 42 H 1.08997 * 109.46790 * 59.99574 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3502 0.2954 5 6 3.2325 2.2768 -0.7071 6 1 3.6672 3.2449 -0.5068 7 6 2.7732 1.9719 -1.9833 8 7 1.7907 1.1136 -2.1403 9 14 3.5529 2.7822 -3.4750 10 1 4.6864 1.9511 -3.9539 11 1 2.5411 2.9090 -4.5546 12 1 4.0506 4.1307 -3.1021 13 6 3.4850 1.6792 1.5543 14 8 3.7676 2.8317 1.8257 15 6 3.5269 0.6486 2.5972 16 7 2.7207 -0.4672 2.6620 17 1 2.0303 -0.6993 2.0215 18 6 3.0408 -1.1812 3.7531 19 6 2.3902 -2.4700 4.1854 20 6 4.0730 -0.5360 4.4098 21 6 4.7330 -0.9777 5.6498 22 8 5.7062 -1.7036 5.5949 23 8 4.2579 -0.5768 6.8455 24 6 4.3749 0.6273 3.6659 25 6 5.4327 1.6502 3.9914 26 6 6.7508 1.2503 3.3255 27 6 7.8249 2.2884 3.6565 28 1 -1.0503 -0.0004 0.0001 29 1 3.0094 -0.3108 -0.9793 30 1 3.0096 -0.6914 0.7595 31 1 1.4706 0.9006 -3.0307 32 1 1.5494 -2.2497 4.8432 33 1 3.1172 -3.0831 4.7179 34 1 2.0335 -3.0091 3.3078 35 1 4.7247 -0.8923 7.6315 36 1 5.1201 2.6265 3.6213 37 1 5.5711 1.6984 5.0715 38 1 7.0633 0.2739 3.6958 39 1 6.6123 1.2020 2.2455 40 1 8.7638 2.0038 3.1818 41 1 7.5125 3.2650 3.2867 42 1 7.9633 2.3363 4.7366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588464686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:22 Heat of formation + Delta-G solvation = -32.457250 kcal Electronic energy + Delta-G solvation = -27405.223945 eV Core-core repulsion = 23545.637767 eV Total energy + Delta-G solvation = -3859.586178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.91371 -40.82790 -39.90581 -37.45887 -36.93798 -36.09689 -34.18575 -33.26440 -32.62639 -32.43273 -28.80402 -28.36121 -27.83509 -26.18233 -24.94474 -22.87892 -21.93764 -21.16351 -20.20218 -19.80084 -19.10856 -18.79903 -18.31664 -17.44642 -16.95861 -16.65468 -16.24940 -16.01212 -15.84979 -15.63315 -15.47890 -14.95033 -14.66460 -14.33569 -14.24670 -14.10211 -13.92316 -13.81614 -13.67349 -13.24791 -13.19558 -12.84090 -12.72277 -12.49120 -12.46297 -12.17867 -12.14963 -12.14050 -11.79519 -11.61435 -11.26884 -11.18849 -10.79919 -10.50344 -10.07103 -9.90263 -9.13483 -8.41086 -5.91700 0.54950 1.10499 1.12790 1.38900 1.41982 1.51429 1.84082 1.94439 2.17603 2.28078 2.32286 2.47709 2.91557 3.19083 3.67278 3.68556 3.85657 3.97073 4.02414 4.19086 4.26580 4.37023 4.40704 4.61143 4.63221 4.69060 4.75179 4.77292 4.87814 4.99034 5.00552 5.04609 5.17977 5.29746 5.37168 5.41339 5.43380 5.57267 5.57595 5.68932 5.97932 6.27709 6.36029 7.02806 7.05678 7.06827 7.27426 7.84643 8.52114 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004812 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.299198 B = 5816.845721 C = 7242.920526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.221 3.779 4 N -0.438 5.438 5 C -0.356 4.356 6 H 0.082 0.918 7 C 0.012 3.988 8 N -0.852 5.852 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.608 6.608 15 C -0.041 4.041 16 N -0.522 5.522 17 H 0.429 0.571 18 C 0.105 3.895 19 C -0.094 4.094 20 C -0.236 4.236 21 C 0.584 3.416 22 O -0.534 6.534 23 O -0.502 6.502 24 C -0.059 4.059 25 C -0.058 4.058 26 C -0.110 4.110 27 C -0.143 4.143 28 H 0.237 0.763 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.430 0.570 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -9.747 11.184 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.167 4.167 3 C 0.098 3.902 4 N -0.154 5.154 5 C -0.483 4.483 6 H 0.100 0.900 7 C -0.193 4.193 8 N -0.487 5.487 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.495 6.495 15 C -0.152 4.152 16 N -0.123 5.123 17 H 0.274 0.726 18 C -0.017 4.017 19 C -0.151 4.151 20 C -0.244 4.244 21 C 0.427 3.573 22 O -0.424 6.424 23 O -0.315 6.315 24 C -0.066 4.066 25 C -0.096 4.096 26 C -0.147 4.147 27 C -0.200 4.200 28 H 0.253 0.747 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.291 0.709 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.604 -9.311 10.601 14.122 hybrid contribution -0.058 0.470 -0.994 1.101 sum 0.546 -8.841 9.608 13.068 Atomic orbital electron populations 1.25172 0.96206 0.99495 1.03020 1.22982 0.94432 1.00736 0.98512 1.18566 0.85520 0.83979 1.02171 1.43849 1.54201 1.10872 1.06509 1.19562 1.41638 0.98726 0.88394 0.90030 1.25919 0.94503 0.98205 1.00721 1.70205 1.19728 1.34419 1.24350 0.85139 0.78513 0.78678 0.77272 1.19206 1.19957 1.20163 1.17158 0.85282 0.87124 0.81451 1.90600 1.57269 1.20524 1.81097 1.19806 1.01342 0.92366 1.01685 1.42463 1.29901 1.18127 1.21793 0.72609 1.21213 0.95973 0.96685 0.87863 1.20716 1.01590 0.89068 1.03684 1.18286 1.06379 1.01338 0.98383 1.19693 0.79603 0.74837 0.83200 1.90871 1.26999 1.36102 1.88430 1.84692 1.59420 1.70652 1.16750 1.19537 0.97837 0.95820 0.93426 1.20190 0.92126 0.96693 1.00545 1.21373 0.94394 0.99609 0.99370 1.21712 0.97938 0.98225 1.02161 0.74664 0.88951 0.89197 0.91321 0.87681 0.88926 0.88602 0.70874 0.91266 0.90309 0.92011 0.94376 0.91587 0.93367 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.04 19.16 74.32 1.42 -6.62 16 2 C -0.16 -6.80 9.50 31.13 0.30 -6.50 16 3 C 0.22 9.51 4.85 84.57 0.41 9.92 16 4 N -0.44 -22.40 2.60 -649.94 -1.69 -24.09 16 5 C -0.36 -19.78 9.37 84.09 0.79 -18.99 16 6 H 0.08 4.92 7.34 -2.91 -0.02 4.90 16 7 C 0.01 0.61 4.87 84.94 0.41 1.03 16 8 N -0.85 -41.90 8.91 21.68 0.19 -41.71 16 9 Si 0.98 40.83 29.64 68.60 2.03 42.87 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.50 25.50 7.43 86.45 0.64 26.14 16 14 O -0.61 -35.07 14.81 -4.43 -0.07 -35.13 16 15 C -0.04 -1.70 6.25 39.99 0.25 -1.45 16 16 N -0.52 -17.41 4.63 -171.62 -0.79 -18.20 16 17 H 0.43 13.46 5.21 -92.71 -0.48 12.98 16 18 C 0.10 2.96 7.21 42.20 0.30 3.26 16 19 C -0.09 -1.62 10.24 71.24 0.73 -0.89 16 20 C -0.24 -7.64 6.01 -20.13 -0.12 -7.76 16 21 C 0.58 16.38 7.51 70.19 0.53 16.91 16 22 O -0.53 -17.07 17.90 19.74 0.35 -16.72 16 23 O -0.50 -10.35 13.44 -56.79 -0.76 -11.12 16 24 C -0.06 -2.25 5.45 -19.52 -0.11 -2.36 16 25 C -0.06 -2.11 5.30 29.85 0.16 -1.95 16 26 C -0.11 -3.72 5.92 30.60 0.18 -3.54 16 27 C -0.14 -3.98 9.91 71.99 0.71 -3.26 16 28 H 0.24 6.50 7.80 -4.40 -0.03 6.47 16 29 H 0.09 4.20 6.65 -2.39 -0.02 4.19 16 30 H 0.09 3.35 4.61 -2.39 -0.01 3.34 16 31 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.48 7.93 -2.39 -0.02 1.46 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.43 4.09 9.11 -74.06 -0.67 3.42 16 36 H 0.07 2.94 6.39 -2.39 -0.02 2.92 16 37 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.43 360.62 5.80 -66.63 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.08 Total: 33.53 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.61 Total: 3.94 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.29 Total: -84.00 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -0.48 Total: -62.97 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.87 kcal Total: -72.43 5.80 -66.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.177 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds