Wall clock time and date at job start Tue Mar 31 2020 13:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50702 * 119.99415 * 2 1 4 4 N 1.46503 * 109.46880 * 125.00105 * 3 2 1 5 5 C 1.46504 * 119.99987 * 270.00161 * 4 3 2 6 6 C 1.50696 * 109.47010 * 269.99979 * 5 4 3 7 7 H 1.08002 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00080 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99954 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99888 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 59.99512 * 10 8 6 12 12 H 1.48503 * 109.46951 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47139 * 299.99246 * 10 8 6 14 14 C 1.34773 * 119.99964 * 89.99727 * 4 3 2 15 15 O 1.21589 * 120.00037 * 180.02562 * 14 4 3 16 16 N 1.34771 * 120.00043 * 0.02562 * 14 4 3 17 17 C 1.39983 * 120.00171 * 184.58999 * 16 14 4 18 18 C 1.38992 * 119.99791 * 144.88016 * 17 16 14 19 19 C 1.38218 * 120.23436 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.88604 * 180.02562 * 19 18 17 21 21 C 1.38003 * 120.22965 * 0.02818 * 19 18 17 22 22 C 1.39635 * 119.98912 * 359.95311 * 21 19 18 23 23 C 1.47740 * 120.11628 * 180.02562 * 22 21 19 24 24 O 1.21467 * 120.00050 * 0.02562 * 23 22 21 25 25 O 1.34704 * 119.99644 * 179.97438 * 23 22 21 26 26 C 1.38578 * 119.99312 * 324.90779 * 17 16 14 27 27 H 1.08000 * 119.99346 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00371 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47218 * 5.00662 * 3 2 1 31 31 H 1.08990 * 109.47105 * 244.99795 * 3 2 1 32 32 H 1.09001 * 109.46865 * 30.00052 * 5 4 3 33 33 H 1.08996 * 109.47274 * 149.99686 * 5 4 3 34 34 H 0.97001 * 119.99995 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00162 * 4.58533 * 16 14 4 36 36 H 1.08004 * 119.87841 * 0.02562 * 18 17 16 37 37 H 1.08996 * 109.47236 * 90.00164 * 20 19 18 38 38 H 1.09001 * 109.47260 * 210.00211 * 20 19 18 39 39 H 1.09008 * 109.47247 * 330.00182 * 20 19 18 40 40 H 1.08002 * 120.01169 * 179.97438 * 21 19 18 41 41 H 0.96706 * 116.99902 * 180.02562 * 25 23 22 42 42 H 1.07999 * 120.11197 * 359.69646 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8649 2.4249 6 6 2.8440 3.3436 2.4805 7 1 3.3037 3.8370 1.6369 8 6 2.5191 4.0665 3.6088 9 7 1.9597 3.4656 4.6362 10 14 2.8720 5.8996 3.6774 11 1 2.1353 6.5867 2.5864 12 1 2.4312 6.4398 4.9885 13 1 4.3297 6.1295 3.5116 14 6 4.2496 0.8663 0.9824 15 8 5.0216 0.8882 1.9216 16 7 4.6499 0.3765 -0.2076 17 6 5.9212 -0.1949 -0.3375 18 6 6.1124 -1.2790 -1.1861 19 6 7.3654 -1.8473 -1.3176 20 6 7.5640 -3.0221 -2.2404 21 6 8.4353 -1.3428 -0.6068 22 6 8.2540 -0.2538 0.2481 23 6 9.3975 0.2890 1.0100 24 8 10.4979 -0.2118 0.8929 25 8 9.2200 1.3400 1.8336 26 6 6.9888 0.3199 0.3805 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 1.4886 1.6965 2.5460 33 1 3.0988 1.3603 3.2260 34 1 1.7307 3.9742 5.4298 35 1 4.0571 0.4198 -0.9741 36 1 5.2789 -1.6786 -1.7447 37 1 7.8224 -2.6623 -3.2363 38 1 8.3698 -3.6503 -1.8607 39 1 6.6434 -3.6036 -2.2917 40 1 9.4128 -1.7899 -0.7120 41 1 9.9979 1.6602 2.3107 42 1 6.8430 1.1650 1.0370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:53 Heat of formation + Delta-G solvation = -64.844895 kcal Electronic energy + Delta-G solvation = -26275.649553 eV Core-core repulsion = 22414.658941 eV Total energy + Delta-G solvation = -3860.990611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67709 -39.90986 -38.54850 -36.09851 -35.87474 -34.69609 -33.18146 -32.75537 -32.11987 -29.91955 -27.48326 -27.02708 -25.57275 -24.80158 -23.38224 -21.50494 -20.96821 -20.09032 -19.34322 -18.10828 -17.71635 -17.02239 -16.57673 -16.20429 -15.86329 -15.58237 -15.32873 -14.98434 -14.80033 -14.44682 -13.92649 -13.87919 -13.48314 -13.37934 -13.07630 -12.81967 -12.46599 -12.30157 -12.10130 -11.87620 -11.74151 -11.62415 -11.48893 -11.33322 -11.14107 -10.94288 -10.65665 -10.60829 -10.22767 -10.11911 -9.71650 -9.33879 -9.28345 -8.86196 -8.44821 -8.13134 -7.70062 -6.05946 -4.10989 0.67840 1.33921 2.33599 2.52028 3.02620 3.15084 3.30882 3.35758 3.39086 3.59669 3.92250 4.31208 4.47238 4.65315 4.89426 5.03275 5.09436 5.14440 5.23051 5.28144 5.31111 5.38692 5.43600 5.45688 5.62213 5.68860 5.88227 5.92302 6.07062 6.17571 6.34219 6.44257 6.45403 6.55165 6.68252 6.72968 6.86257 7.07143 7.31229 7.44984 7.59732 7.91009 7.93595 8.20001 8.47773 8.88884 9.14330 9.54306 11.01957 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004157 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.350162 B = 6734.415106 C = 8890.745697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.601 5.601 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.697 3.303 15 O -0.563 6.563 16 N -0.696 5.696 17 C 0.170 3.830 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.110 4.110 23 C 0.533 3.467 24 O -0.523 6.523 25 O -0.501 6.501 26 C -0.067 4.067 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.412 0.588 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -10.042 -14.853 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.334 5.334 5 C 0.143 3.857 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.399 3.601 15 O -0.439 6.439 16 N -0.346 5.346 17 C 0.074 3.926 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.101 4.101 22 C -0.112 4.112 23 C 0.378 3.622 24 O -0.414 6.414 25 O -0.312 6.312 26 C -0.087 4.087 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.271 0.729 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.800 -10.185 -14.113 18.345 hybrid contribution 0.213 1.261 0.122 1.284 sum 6.013 -8.925 -13.991 17.651 Atomic orbital electron populations 1.23836 0.95812 1.01863 1.00024 1.23434 0.96506 0.98902 1.00373 1.20543 0.93216 0.95781 0.89205 1.47602 1.08663 1.62904 1.14279 1.19251 0.95296 0.93606 0.77556 1.21403 1.40746 0.93328 1.01306 0.92485 1.24910 0.95009 0.98722 0.95284 1.69920 1.41883 1.36285 1.05178 0.86568 0.78867 0.84898 0.77138 1.20297 1.21188 1.20141 1.15960 0.83344 0.78677 0.82086 1.90916 1.52555 1.61178 1.39230 1.42982 1.15364 1.63824 1.12459 1.17413 0.84602 0.92926 0.97664 1.21005 0.97662 0.94425 1.00953 1.19503 0.92321 0.97955 0.98568 1.20754 1.02767 0.95015 0.98090 1.20988 0.99371 0.94843 0.94858 1.18887 0.91820 0.99504 1.00972 1.20881 0.87802 0.76993 0.76562 1.90847 1.26721 1.59516 1.64333 1.84682 1.44739 1.46344 1.55395 1.21819 0.89285 0.99791 0.97838 0.88714 0.88185 0.87777 0.88926 0.91540 0.94714 0.93667 0.92631 0.75963 0.85255 0.91025 0.91284 0.91352 0.84771 0.72929 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.17 -2.26 9.85 -36.03 -0.35 -2.62 16 3 C 0.14 2.05 5.65 -5.19 -0.03 2.02 16 4 N -0.60 -12.15 2.44 -182.19 -0.44 -12.59 16 5 C 0.26 6.65 5.16 -5.19 -0.03 6.62 16 6 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.70 14.16 8.12 -86.93 -0.71 13.45 16 15 O -0.56 -13.85 13.36 5.29 0.07 -13.78 16 16 N -0.70 -10.55 5.22 -14.26 -0.07 -10.62 16 17 C 0.17 2.51 6.30 -83.73 -0.53 1.98 16 18 C -0.12 -1.36 9.61 -39.31 -0.38 -1.74 16 19 C -0.08 -0.89 5.87 -104.72 -0.61 -1.51 16 20 C -0.11 -0.81 10.00 36.00 0.36 -0.45 16 21 C -0.08 -1.02 9.24 -39.15 -0.36 -1.38 16 22 C -0.11 -1.64 5.87 -105.00 -0.62 -2.25 16 23 C 0.53 8.00 8.27 34.61 0.29 8.29 16 24 O -0.52 -8.49 17.13 -19.24 -0.33 -8.82 16 25 O -0.50 -6.85 12.68 -40.50 -0.51 -7.36 16 26 C -0.07 -1.10 8.25 -38.97 -0.32 -1.42 16 27 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.10 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.05 16 31 H 0.07 0.79 6.30 -51.93 -0.33 0.47 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.40 4.74 6.52 -40.82 -0.27 4.47 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.07 0.43 8.08 -51.92 -0.42 0.01 16 40 H 0.13 1.54 7.64 -52.49 -0.40 1.14 16 41 H 0.41 3.48 9.11 45.56 0.42 3.89 16 42 H 0.16 3.17 5.78 -52.49 -0.30 2.86 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -34.86 367.33 -7.91 -42.77 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.58 Total: 7.72 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -3.29 Total: 6.03 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.22 Total: -48.63 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.77 Total: -29.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -7.91 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.072 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds