Wall clock time and date at job start Tue Mar 31 2020 13:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50702 * 119.99415 * 2 1 4 4 N 1.46503 * 109.46880 * 125.00105 * 3 2 1 5 5 C 1.46504 * 119.99987 * 270.00161 * 4 3 2 6 6 C 1.50696 * 109.47010 * 269.99979 * 5 4 3 7 7 H 1.08002 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00080 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99954 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99888 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 59.99512 * 10 8 6 12 12 H 1.48503 * 109.46951 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47139 * 299.99246 * 10 8 6 14 14 C 1.34773 * 119.99964 * 89.99727 * 4 3 2 15 15 O 1.21589 * 120.00037 * 180.02562 * 14 4 3 16 16 N 1.34771 * 120.00043 * 0.02562 * 14 4 3 17 17 C 1.39983 * 120.00171 * 184.58999 * 16 14 4 18 18 C 1.38992 * 119.99791 * 144.88016 * 17 16 14 19 19 C 1.38218 * 120.23436 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.88604 * 180.02562 * 19 18 17 21 21 C 1.38003 * 120.22965 * 0.02818 * 19 18 17 22 22 C 1.39635 * 119.98912 * 359.95311 * 21 19 18 23 23 C 1.47740 * 120.11628 * 180.02562 * 22 21 19 24 24 O 1.21467 * 120.00050 * 0.02562 * 23 22 21 25 25 O 1.34704 * 119.99644 * 179.97438 * 23 22 21 26 26 C 1.38578 * 119.99312 * 324.90779 * 17 16 14 27 27 H 1.08000 * 119.99346 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00371 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47218 * 5.00662 * 3 2 1 31 31 H 1.08990 * 109.47105 * 244.99795 * 3 2 1 32 32 H 1.09001 * 109.46865 * 30.00052 * 5 4 3 33 33 H 1.08996 * 109.47274 * 149.99686 * 5 4 3 34 34 H 0.97001 * 119.99995 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00162 * 4.58533 * 16 14 4 36 36 H 1.08004 * 119.87841 * 0.02562 * 18 17 16 37 37 H 1.08996 * 109.47236 * 90.00164 * 20 19 18 38 38 H 1.09001 * 109.47260 * 210.00211 * 20 19 18 39 39 H 1.09008 * 109.47247 * 330.00182 * 20 19 18 40 40 H 1.08002 * 120.01169 * 179.97438 * 21 19 18 41 41 H 0.96706 * 116.99902 * 180.02562 * 25 23 22 42 42 H 1.07999 * 120.11197 * 359.69646 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8649 2.4249 6 6 2.8440 3.3436 2.4805 7 1 3.3037 3.8370 1.6369 8 6 2.5191 4.0665 3.6088 9 7 1.9597 3.4656 4.6362 10 14 2.8720 5.8996 3.6774 11 1 2.1353 6.5867 2.5864 12 1 2.4312 6.4398 4.9885 13 1 4.3297 6.1295 3.5116 14 6 4.2496 0.8663 0.9824 15 8 5.0216 0.8882 1.9216 16 7 4.6499 0.3765 -0.2076 17 6 5.9212 -0.1949 -0.3375 18 6 6.1124 -1.2790 -1.1861 19 6 7.3654 -1.8473 -1.3176 20 6 7.5640 -3.0221 -2.2404 21 6 8.4353 -1.3428 -0.6068 22 6 8.2540 -0.2538 0.2481 23 6 9.3975 0.2890 1.0100 24 8 10.4979 -0.2118 0.8929 25 8 9.2200 1.3400 1.8336 26 6 6.9888 0.3199 0.3805 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 1.4886 1.6965 2.5460 33 1 3.0988 1.3603 3.2260 34 1 1.7307 3.9742 5.4298 35 1 4.0571 0.4198 -0.9741 36 1 5.2789 -1.6786 -1.7447 37 1 7.8224 -2.6623 -3.2363 38 1 8.3698 -3.6503 -1.8607 39 1 6.6434 -3.6036 -2.2917 40 1 9.4128 -1.7899 -0.7120 41 1 9.9979 1.6602 2.3107 42 1 6.8430 1.1650 1.0370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:52 Heat of formation + Delta-G solvation = -87.687741 kcal Electronic energy + Delta-G solvation = -26276.640093 eV Core-core repulsion = 22414.658941 eV Total energy + Delta-G solvation = -3861.981151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.92904 -41.21638 -39.73398 -37.41072 -37.16477 -36.07227 -34.97781 -33.83641 -33.55558 -31.17855 -29.24253 -27.86147 -26.95764 -25.90471 -25.20805 -22.83595 -22.08010 -21.26067 -20.64280 -19.39607 -18.95589 -18.58807 -18.27605 -17.53980 -17.00582 -16.76073 -16.60076 -16.55612 -16.07853 -15.91348 -15.41726 -14.95678 -14.54666 -14.49211 -14.39892 -14.15872 -13.96712 -13.33989 -13.22656 -13.12107 -12.99759 -12.86320 -12.71520 -12.64200 -12.62090 -12.54800 -12.25376 -12.18868 -11.83842 -11.69608 -11.40022 -10.94194 -10.62363 -10.33003 -9.86807 -9.61468 -9.09021 -8.20104 -6.34616 -0.39703 0.27008 1.25865 1.37725 1.39691 1.41831 1.48963 1.79802 2.04614 2.16224 2.40031 2.74672 3.00675 3.10208 3.73460 3.93825 4.02591 4.11996 4.18873 4.23985 4.26467 4.33882 4.39583 4.70944 4.79559 4.85312 4.94017 4.95464 5.06009 5.12878 5.17725 5.24339 5.29649 5.43689 5.46652 5.51665 5.53689 5.70986 5.75225 5.91969 5.93277 6.05808 6.07794 6.73973 6.89230 7.02105 7.32241 7.61246 8.86330 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004157 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.350162 B = 6734.415106 C = 8890.745697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.606 5.606 5 C 0.282 3.718 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.694 3.306 15 O -0.616 6.616 16 N -0.674 5.674 17 C 0.148 3.852 18 C -0.099 4.099 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.078 4.078 22 C -0.127 4.127 23 C 0.532 3.468 24 O -0.540 6.540 25 O -0.511 6.511 26 C -0.093 4.093 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.027 0.973 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.422 0.578 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.431 0.569 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -11.278 -17.880 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.011 3.989 4 N -0.339 5.339 5 C 0.160 3.840 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.396 3.604 15 O -0.496 6.496 16 N -0.325 5.325 17 C 0.053 3.947 18 C -0.119 4.119 19 C -0.072 4.072 20 C -0.164 4.164 21 C -0.097 4.097 22 C -0.129 4.129 23 C 0.378 3.622 24 O -0.433 6.433 25 O -0.324 6.324 26 C -0.114 4.114 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.186 0.814 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.292 0.708 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.359 -11.433 -17.218 21.352 hybrid contribution 0.371 1.567 1.023 1.907 sum 5.730 -9.866 -16.196 19.811 Atomic orbital electron populations 1.24061 0.95526 1.02931 0.97800 1.23307 0.96832 0.98064 1.02297 1.20806 0.92778 0.96849 0.88496 1.47408 1.09716 1.62787 1.14014 1.18627 0.93857 0.92385 0.79109 1.21689 1.40554 0.94504 1.01380 0.92868 1.25787 0.94690 1.03466 0.94857 1.70039 1.42787 1.38094 1.05746 0.85530 0.78398 0.79382 0.77865 1.18428 1.20433 1.20557 1.16127 0.82801 0.78557 0.82942 1.90888 1.53985 1.63156 1.41532 1.42556 1.15866 1.62930 1.11155 1.17629 0.83570 0.94468 0.99031 1.21361 0.99161 0.92313 0.99086 1.19979 0.91241 0.98233 0.97743 1.20867 1.04172 0.93552 0.97855 1.21275 1.00709 0.93719 0.94009 1.19012 0.91089 1.00659 1.02107 1.21022 0.87745 0.76922 0.76462 1.90822 1.27199 1.60131 1.65100 1.84672 1.46227 1.46093 1.55420 1.21520 0.91054 0.99885 0.98922 0.86561 0.88226 0.86847 0.89854 0.88167 0.95525 0.98413 0.92439 0.73778 0.81374 0.89158 0.90462 0.89494 0.83553 0.70750 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 14.32 67.77 0.97 -2.64 16 2 C -0.19 -4.55 9.85 25.64 0.25 -4.29 16 3 C 0.13 3.88 5.65 85.63 0.48 4.36 16 4 N -0.61 -25.14 2.44 -848.59 -2.07 -27.21 16 5 C 0.28 15.02 5.16 85.63 0.44 15.46 16 6 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.64 5.46 84.65 0.46 1.10 16 9 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 10 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.69 29.10 8.12 179.06 1.45 30.55 16 15 O -0.62 -32.34 13.36 -4.00 -0.05 -32.39 16 16 N -0.67 -20.00 5.22 -317.28 -1.65 -21.66 16 17 C 0.15 4.27 6.30 38.10 0.24 4.51 16 18 C -0.10 -1.93 9.61 22.45 0.22 -1.71 16 19 C -0.07 -1.29 5.87 -19.93 -0.12 -1.41 16 20 C -0.11 -1.06 10.00 71.24 0.71 -0.35 16 21 C -0.08 -1.83 9.24 22.55 0.21 -1.63 16 22 C -0.13 -3.85 5.87 -20.11 -0.12 -3.97 16 23 C 0.53 16.59 8.27 70.33 0.58 17.18 16 24 O -0.54 -17.73 17.13 19.94 0.34 -17.39 16 25 O -0.51 -14.90 12.68 -56.14 -0.71 -15.62 16 26 C -0.09 -3.21 8.25 22.67 0.19 -3.02 16 27 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.10 2.18 7.84 -2.91 -0.02 2.16 16 29 H 0.11 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.08 2.58 7.72 -2.39 -0.02 2.57 16 31 H 0.10 2.18 6.30 -2.39 -0.02 2.17 16 32 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.42 8.96 6.52 -92.71 -0.60 8.36 16 36 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.09 0.61 8.08 -2.38 -0.02 0.59 16 40 H 0.15 3.06 7.64 -2.91 -0.02 3.04 16 41 H 0.43 7.82 9.11 -74.05 -0.67 7.15 16 42 H 0.12 5.17 5.78 -2.91 -0.02 5.16 16 Total: -1.00 -80.91 367.33 4.17 -76.74 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.21 Total: 22.80 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 6.22 Total: 23.42 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.44 Total: -104.39 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: -0.42 Total: -65.40 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -80.91 4.17 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.949 kcal (2) G-P(sol) polarization free energy of solvation -80.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds