Wall clock time and date at job start Tue Mar 31 2020 12:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48495 * 109.46909 * 240.00316 * 3 2 1 5 5 H 1.48499 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47016 * 120.00152 * 3 2 1 7 7 C 1.37881 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00292 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.52975 * 300.09793 * 9 7 2 11 11 C 1.53118 * 109.50698 * 60.18987 * 9 7 2 12 12 C 1.53113 * 109.16308 * 177.59653 * 11 9 7 13 13 C 1.53042 * 109.28180 * 302.35028 * 12 11 9 14 14 N 1.46846 * 109.51957 * 59.17347 * 13 12 11 15 15 C 1.39062 * 110.99889 * 174.15936 * 14 13 12 16 16 N 1.32405 * 119.58833 * 124.19003 * 15 14 13 17 17 C 1.31821 * 121.77006 * 180.02562 * 16 15 14 18 18 C 1.39128 * 120.73755 * 359.97438 * 17 16 15 19 19 C 1.48429 * 120.44672 * 180.02562 * 18 17 16 20 20 N 1.34054 * 126.67727 * 180.02562 * 19 18 17 21 21 N 1.28979 * 107.26816 * 179.97438 * 20 19 18 22 22 N 1.28725 * 108.94748 * 359.97438 * 21 20 19 23 23 H 0.97007 * 125.33940 * 180.02562 * 22 21 20 24 24 N 1.28869 * 109.32075 * 359.76650 * 22 21 20 25 25 C 1.39932 * 119.11000 * 0.02562 * 18 17 16 26 26 C 1.38255 * 118.38220 * 359.97438 * 25 18 17 27 27 F 1.35098 * 120.40622 * 179.97438 * 26 25 18 28 28 C 1.46847 * 111.20442 * 298.26185 * 14 13 12 29 29 H 0.96994 * 119.99681 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.52820 * 297.50922 * 11 9 7 31 31 H 1.09005 * 109.51598 * 57.69285 * 11 9 7 32 32 H 1.09005 * 109.50284 * 62.29346 * 12 11 9 33 33 H 1.09001 * 109.50516 * 182.36924 * 12 11 9 34 34 H 1.09005 * 109.45839 * 299.16627 * 13 12 11 35 35 H 1.08992 * 109.46256 * 179.19553 * 13 12 11 36 36 H 1.07999 * 119.63180 * 180.02562 * 17 16 15 37 37 H 1.08001 * 120.80575 * 180.27233 * 25 18 17 38 38 H 1.08998 * 109.46065 * 181.75828 * 28 14 13 39 39 H 1.08999 * 109.45784 * 301.74187 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6224 -2.5578 0.8868 11 6 0.3745 -2.5824 -1.2544 12 6 -0.3411 -3.9358 -1.2781 13 6 0.6989 -5.0581 -1.2416 14 7 1.5112 -4.9348 -0.0245 15 6 2.3792 -6.0133 0.1067 16 7 3.6795 -5.7949 0.2283 17 6 4.5407 -6.7849 0.3546 18 6 4.1077 -8.1071 0.3651 19 6 5.0829 -9.2168 0.5083 20 7 4.8058 -10.5281 0.5335 21 7 5.9254 -11.1535 0.6711 22 7 6.8804 -10.2925 0.7315 23 1 7.8214 -10.5046 0.8339 24 7 6.3909 -9.1048 0.6290 25 6 2.7404 -8.3767 0.2389 26 6 1.8697 -7.3107 0.1085 27 9 0.5415 -7.5241 -0.0166 28 6 2.2449 -3.6629 -0.0021 29 1 -0.4849 0.8400 0.0004 30 1 -0.3635 -1.7804 -1.2367 31 1 0.9987 -2.4847 -2.1427 32 1 -0.9948 -4.0171 -0.4097 33 1 -0.9341 -4.0181 -2.1890 34 1 1.3436 -4.9843 -2.1174 35 1 0.1921 -6.0230 -1.2439 36 1 5.5940 -6.5672 0.4518 37 1 2.3738 -9.3925 0.2480 38 1 2.8609 -3.6148 0.8958 39 1 2.8821 -3.5958 -0.8839 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:01 Heat of formation + Delta-G solvation = 126.428201 kcal Electronic energy + Delta-G solvation = -25980.679011 eV Core-core repulsion = 22069.107821 eV Total energy + Delta-G solvation = -3911.571190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.91360 -44.72291 -40.48756 -38.12779 -34.92097 -34.28251 -33.45352 -32.22165 -31.79338 -30.06085 -29.33367 -25.38362 -25.16512 -24.94539 -23.68734 -22.77479 -21.72715 -21.37496 -19.57014 -18.79597 -17.68260 -17.41491 -17.29941 -17.12315 -16.05782 -15.79608 -15.33827 -14.62367 -14.41801 -14.34236 -14.27525 -13.94358 -13.50743 -13.18157 -12.86652 -12.75030 -12.60387 -12.40738 -12.33451 -11.81819 -11.67436 -11.41396 -11.38743 -10.94219 -10.83214 -10.72094 -10.20025 -9.91735 -9.87877 -9.73551 -9.58486 -9.39535 -9.15916 -8.74271 -8.32145 -7.79224 -5.99785 -4.05792 0.37291 0.88724 0.98260 1.94971 2.07087 3.31175 3.32744 3.37289 3.39865 3.49339 3.71054 3.82663 4.31149 4.37777 4.48161 4.65817 4.78882 5.03531 5.19993 5.30544 5.42166 5.54662 5.55900 5.60528 5.76047 5.89197 6.03849 6.07824 6.27249 6.37582 6.44775 6.55127 6.67851 6.85721 6.94025 7.19350 7.31667 7.53961 7.72688 7.85086 7.88097 7.99707 8.11804 8.42503 8.97428 9.58665 11.06614 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.003030 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.991789 B = 9239.803053 C =10385.445585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.054 3.946 14 N -0.467 5.467 15 C 0.327 3.673 16 N -0.491 5.491 17 C 0.171 3.829 18 C -0.100 4.100 19 C 0.237 3.763 20 N -0.271 5.271 21 N -0.050 5.050 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.294 5.294 25 C -0.044 4.044 26 C 0.020 3.980 27 F -0.120 7.120 28 C 0.076 3.924 29 H 0.261 0.739 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -19.214 -0.826 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.071 4.071 14 N -0.181 5.181 15 C 0.091 3.909 16 N -0.205 5.205 17 C 0.009 3.991 18 C -0.108 4.108 19 C -0.043 4.043 20 N -0.144 5.144 21 N -0.045 5.045 22 N -0.073 5.073 23 H 0.330 0.670 24 N -0.146 5.146 25 C -0.072 4.072 26 C -0.005 4.005 27 F -0.098 7.098 28 C -0.049 4.049 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.094 0.906 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.353 -18.763 -0.427 20.970 hybrid contribution 0.942 0.259 -0.395 1.054 sum 10.295 -18.504 -0.823 21.191 Atomic orbital electron populations 1.69873 1.05860 1.26555 1.50475 1.24928 0.94841 0.99000 0.95018 0.86652 0.79584 0.83099 0.78628 1.20314 1.21349 1.20253 1.21044 0.92937 0.90285 1.50980 0.92567 1.18766 0.92610 0.90463 0.94956 0.94688 1.21734 1.00234 0.94647 0.98680 1.21719 0.96844 0.95851 1.01120 1.22441 0.95714 1.01540 0.87415 1.59000 1.20753 1.02727 1.35614 1.20519 0.88713 0.89991 0.91684 1.68015 1.00878 1.34664 1.16925 1.22770 0.99899 0.86024 0.90426 1.17784 0.90119 0.90368 1.12517 1.23293 0.88362 0.91743 1.00891 1.76090 1.16731 1.03656 1.17962 1.78899 0.91394 1.19653 1.14530 1.47714 1.12957 1.00972 1.45694 0.67000 1.74941 1.10998 1.06504 1.22148 1.21366 0.91233 0.99767 0.94851 1.17859 0.78980 0.92762 1.10915 1.91467 1.29701 1.95155 1.93500 1.22411 0.96098 0.84960 1.01416 0.92936 0.88657 0.94703 0.91606 0.92423 0.93847 0.89945 0.81273 0.82554 0.90576 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.36 55.43 0.63 -24.27 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.05 0.93 5.16 -3.83 -0.02 0.91 16 14 N -0.47 -8.80 4.63 -173.13 -0.80 -9.60 16 15 C 0.33 5.46 6.42 -154.86 -0.99 4.47 16 16 N -0.49 -7.89 8.66 -12.11 -0.10 -8.00 16 17 C 0.17 2.19 10.85 -17.23 -0.19 2.00 16 18 C -0.10 -1.21 5.89 -104.73 -0.62 -1.82 16 19 C 0.24 2.68 7.95 -156.30 -1.24 1.44 16 20 N -0.27 -3.15 12.30 32.15 0.40 -2.76 16 21 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 22 N -0.23 -1.56 7.90 60.35 0.48 -1.08 16 23 H 0.48 0.89 8.96 -340.37 -3.05 -2.16 16 24 N -0.29 -2.81 12.09 32.17 0.39 -2.42 16 25 C -0.04 -0.54 9.81 -38.94 -0.38 -0.92 16 26 C 0.02 0.29 6.97 -39.15 -0.27 0.02 16 27 F -0.12 -1.77 14.75 2.25 0.03 -1.74 16 28 C 0.08 1.62 3.87 -3.84 -0.01 1.60 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.28 5.52 -51.93 -0.29 1.00 16 36 H 0.17 1.79 7.88 -52.49 -0.41 1.37 16 37 H 0.16 1.63 7.96 -52.49 -0.42 1.21 16 38 H 0.08 1.66 7.70 -51.93 -0.40 1.26 16 39 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -30.44 329.26 -9.82 -40.26 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.97 Total: -2.85 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -4.62 Total: -8.86 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.80 Total: -47.78 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.44 -9.82 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.689 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds